Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_007233018.3 |
| length | 4882 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 16 |
| gene id | LOC103030680 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035899.1 |
| NCBI id | CM008302.1 |
| chromosome length | 74127438 |
| location | 62301147 ~ 62362260 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0060088 | auditory receptor cell stereocilium organization | biological_process |
| GO:0048752 | semicircular canal morphogenesis | biological_process |
| GO:0001755 | neural crest cell migration | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0036342 | post-anal tail morphogenesis | biological_process |
| GO:0001764 | neuron migration | biological_process |
| GO:0070285 | pigment cell development | biological_process |
| GO:0001502 | cartilage condensation | biological_process |
| GO:0042478 | regulation of eye photoreceptor cell development | biological_process |
| GO:0045198 | establishment of epithelial cell apical/basal polarity | biological_process |
| GO:0021915 | neural tube development | biological_process |
| GO:0042246 | tissue regeneration | biological_process |
| GO:0035118 | embryonic pectoral fin morphogenesis | biological_process |
| GO:0048331 | axial mesoderm structural organization | biological_process |
| GO:0035142 | dorsal fin morphogenesis | biological_process |
| GO:0048048 | embryonic eye morphogenesis | biological_process |
| GO:0007398 | ectoderm development | biological_process |
| GO:0010002 | cardioblast differentiation | biological_process |
| GO:0007413 | axonal fasciculation | biological_process |
| GO:0007416 | synapse assembly | biological_process |
| GO:0060030 | dorsal convergence | biological_process |
| GO:0007422 | peripheral nervous system development | biological_process |
| GO:0030901 | midbrain development | biological_process |
| GO:0030902 | hindbrain development | biological_process |
| GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules | biological_process |
| GO:0060059 | embryonic retina morphogenesis in camera-type eye | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0042734 | presynaptic membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016342 | catenin complex | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| id | description |
|---|---|
| K06736 | CDH2, CDHN, CD325; cadherin 2, type 1, N-cadherin |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU40334 | lncRNA | downstream | 40821 | 62260122 ~ 62260326 (-) | True | G30093 |
| TU40322 | lncRNA | downstream | 64553 | 62232928 ~ 62236594 (-) | True | G30083 |
| TU40320 | lncRNA | downstream | 65360 | 62233818 ~ 62235787 (-) | True | G30081 |
| TU40303 | lncRNA | downstream | 122714 | 62178192 ~ 62178433 (-) | True | G30066 |
| TU40295 | lncRNA | downstream | 190678 | 62110268 ~ 62110469 (-) | True | G30058 |
| TU40418 | lncRNA | upstream | 356033 | 62718293 ~ 62751535 (-) | True | G30150 |
| TU40405 | lncRNA | upstream | 374947 | 62737207 ~ 62744288 (-) | True | G30141 |
| TU40472 | lncRNA | upstream | 476874 | 62839134 ~ 62843134 (-) | True | G30196 |
| TU40512 | lncRNA | upstream | 564654 | 62926914 ~ 62929726 (-) | True | G30229 |
| TU40515 | lncRNA | upstream | 568858 | 62931118 ~ 62931764 (-) | True | G30231 |
| XM_022668152.1 | mRNA | downstream | 86481 | 62213160 ~ 62214666 (-) | False | LOC111191939 |
| XM_022668148.1 | mRNA | downstream | 86492 | 62213160 ~ 62214655 (-) | True | LOC111191939 |
| XM_007233017.3 | mRNA | downstream | 243284 | 62046691 ~ 62057863 (-) | True | LOC103030167 |
| XM_015601215.2 | mRNA | downstream | 261308 | 62009807 ~ 62039839 (-) | False | LOC103031849 |
| XM_022664205.1 | mRNA | downstream | 275490 | 62009807 ~ 62025657 (-) | True | LOC103031849 |
| XM_007257007.3 | mRNA | upstream | 436359 | 62798619 ~ 62817748 (-) | True | LOC103034091 |
| XM_007257013.3 | mRNA | upstream | 580813 | 62943073 ~ 62962918 (-) | True | b4galt6 |
| XM_022664256.1 | mRNA | upstream | 617052 | 62979312 ~ 63007981 (-) | True | LOC103046711 |
| XM_007257016.2 | mRNA | upstream | 651978 | 63014238 ~ 63065232 (-) | False | trappc8 |
| XM_007257015.2 | mRNA | upstream | 651978 | 63014238 ~ 63065232 (-) | False | trappc8 |
| XR_002649101.1 | other | downstream | 413259 | 61833448 ~ 61887888 (-) | False | LOC103043586 |
| XR_002649735.1 | other | downstream | 1931533 | 60369046 ~ 60369614 (-) | True | LOC111191938 |
| TU39714 | other | downstream | 2139123 | 60157538 ~ 60162024 (-) | False | LOC103034188 |
| TU39539 | other | downstream | 2862849 | 59437600 ~ 59438298 (-) | True | G29478 |
| TU39330 | other | downstream | 3366358 | 58932963 ~ 58934789 (-) | True | G29317 |
| TU40670 | other | upstream | 848021 | 63210281 ~ 63288108 (-) | False | fryl |
| TU40671 | other | upstream | 848021 | 63210281 ~ 63256634 (-) | False | fryl |
| TU40672 | other | upstream | 848021 | 63210281 ~ 63231566 (-) | False | fryl |
| TU40747 | other | upstream | 967784 | 63330044 ~ 63334846 (-) | True | G30376 |
| XR_002649174.1 | other | upstream | 1071532 | 63433792 ~ 63465756 (-) | False | usp46 |
