RNA id: XM_022664187.1


Basic Information

Item Value
RNA id XM_022664187.1
length 1995
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC103031223
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 61950471 ~ 61983459 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCTGTGTACAGCAGGCACGTTAGAAAGTGTCTAGACTGAAGACATAAATCCTATCAGCGTTGTTTTGTTCTTCGCCTCTTAAAGCCTCCACATGGAATTGTGTGAGCGATGCGCGCGACTTTTTAAAGACGTTGAAGCCCTTATTAAGGAGGAAACAGAAAGCTTTGTGCAGAGAGTGAAAGGTGTTGCTGGGAGAATCTCGAAGTGCTGTGGCTGGGGTAAAACATCTGCTGTCCCTCatgaaaaactttatgaacttcTGCGACGACAGCACTTGAAGCGTGAAAGCAGCTCCAGACTGAACCATCACCTTCCCACAGTACAGAATCGTGACTCAACTGTATTACTGGAGACATGCTGTACTCTCCTGCAGTCAGATGATGTGGAGGATCAGAGGACAGTGACTCTGTCCATGCTTAATCTTCTCATAGACAGGAAAGttaaaGAAGAGCATGTCATTGAGATGGGGCTTTTGGAGCCACTGGTTGATCTCCTACAGTCTGGTGATAACACAGTTCAATGTCACTCCAGTGCATGTATTGCTTTGCTAGCCTCTTCAGATTCAAACAGAGAGGTGATTGTGGCCTCTGATGCTGTGCTGCCTCTGCTTGTCCTGGCACGGGCCTTTGATCCAAAAGTTCAACAAAATGCTGTCAGAGCCCTTCTTAATCTTACCAAATCTGagAATACGGTAGATGTGCTTTGTAAAGAGGGAATTATACCTGTGCTGGCTCTACTGTTACAGTCAACTGATTCTGAAGTTCAGTTCTGCAGCTGCTATGCATTGAGTAATATTGCTGCAGTTCCAGAGCATCACacaaaaatgctccaaattgGTGACCGTTTCCTGCTGAAATCCCTGGTCTTACTTATGGGCTCATCTGTTCTTAAGAATTCCACCCAGGCCAGTCAGTGCCTCAGGAGCCTCACTTTGAATGGTGAGGCACATAATCAACTGGTTGGGCTGGATTGGGTGTGCCCACTGTTGACCCTCCTGAGAGCCCCAGAACATACCCCCCCTGAAACTGCTTTAATGCTGCTCTCTCAGCTTTCTGCCCACCCACCAAAGAGAgaGTCTCTGGTGAATCAGGGTGTGATTCCTGTTTTGGGAGACCTGCTTCTCACACATCTGCCTAACCCAACTATAGTCACTCACTGCACTGTTACCTTCAACCACCTCTGGGACATTGTGGAGAGTCTGCAGgtCCCGCTGCCGATCGAATGCTTGTCTGGGCTTCTTCTGGCTCTTGAGTTTCATTGGAAGGAGGATGACGTTGTTTTAAGTGTATTAATTTGCCTCTATTCACTGGCTTGTCATGACTCTCTCCGATTCGGTCTTGTCGAGAAAATGACTACAACTCACATTGGCAGACTTGTGGTCATCTCCAGTGAAAGCAAAAATGTTGAATTGTCTTTTGCTGCCGGTTCTTTAATCAGCAAATTAGACATAAATGATGAACTACTGAAACTTCACCACAAAGCCATTGTGGAATACTTGATGAGATTCCTTCGCAGTCAGGAAGTGAGATTTCAGCAGCTTGCTATCTCTAGTGTGTCTAATCTCAAAAAAGGCAAGTTAGCATTTTTCCAAAAGcccatgcattttttattacaagGTTTGATTTTAAGAAGTATAAAACCCTTCCCTATTCTCAGTCAAATGAGCAGGGTGTGGAAAAACGCCACCAGGTCCAGGTGCAGCTCTTTGAATGTCAGTTGGCAGTTGAGTGATAAGATTGTGTCTGTGCAGGTGGAGGGCTGGGCAGAATGGTGACGAGGGTGGATCTGGAGCAGGAGCTGAACAGAGTGCAGCAGCAGACTGAACACACCAGACAGCTGCTCCTGATGCTCCGGCAGGACACTTTAACTATGGGCAAACCCTGAAGCAGCAGTGTTGATTGAATTTATGTGTTTACCATGACTAATGCAGAGTTTTATAGCAacttgtattattaatttttgcatagcagtgtttttatgtttgtgtttttata

Function

GO: NA

KEGG:

id description
K08332 VAC8; vacuolar protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40178 lncRNA upstream 12495 61937664 ~ 61937976 (+) True G29977
TU40156 lncRNA upstream 32847 61908703 ~ 61917624 (+) False G29963
TU40157 lncRNA upstream 32847 61908703 ~ 61917624 (+) False G29963
TU40177 lncRNA upstream 35319 61913064 ~ 61915152 (+) True G29976
TU40160 lncRNA upstream 38266 61910075 ~ 61912205 (+) True G29963
TU40273 lncRNA downstream 64153 62047612 ~ 62092000 (+) True G30042
TU40338 lncRNA downstream 317375 62300834 ~ 62303159 (+) False G30097
TU40343 lncRNA downstream 317375 62300834 ~ 62303159 (+) True G30097
TU40344 lncRNA downstream 317375 62300834 ~ 62303159 (+) False G30097
TU40359 lncRNA downstream 341058 62324517 ~ 62356704 (+) True G30105
XM_007238760.3 mRNA upstream 14770 61926080 ~ 61935701 (+) False LOC103046322
XM_007238742.3 mRNA upstream 245643 61693955 ~ 61704828 (+) False l3hypdh
XM_022664062.1 mRNA upstream 245643 61694068 ~ 61704828 (+) True l3hypdh
XM_007238741.3 mRNA upstream 245643 61697476 ~ 61704828 (+) False l3hypdh
XM_022664028.1 mRNA upstream 786873 60994927 ~ 61163598 (+) True LOC103031412
XM_007233016.3 mRNA downstream 1180 61984639 ~ 61990664 (+) True LOC103029839
XM_007257006.3 mRNA downstream 808289 62791748 ~ 62793588 (+) True LOC103033766
XM_022678415.1 mRNA downstream 855761 62839220 ~ 62853288 (+) True LOC103045797
XM_007257008.2 mRNA downstream 885652 62869111 ~ 62885298 (+) True LOC103034413
XM_015607799.2 mRNA downstream 905409 62888868 ~ 62907516 (+) True LOC103046101
TU40175 other upstream 14388 61926106 ~ 61936083 (+) True LOC103046322
trnad-guc_1 other upstream 253600 61696800 ~ 61696871 (+) True trnad-guc_1
trnad-guc other upstream 257187 61693213 ~ 61693284 (+) True trnad-guc
XR_002649037.1 other upstream 1506964 60430861 ~ 60443507 (+) True LOC111190190
TU39573 other upstream 2352230 59590989 ~ 59598241 (+) False nme6
TU40444 other downstream 855776 62839235 ~ 62843043 (+) False LOC103045797
TU40713 other downstream 1352275 63335734 ~ 63345693 (+) True G30362
TU40718 other downstream 1352275 63335734 ~ 63345693 (+) False G30362
TU40730 other downstream 1352275 63335734 ~ 63345693 (+) False G30362
TU40731 other downstream 1352275 63335734 ~ 63345693 (+) False G30362

Expression Profile