RNA id: XM_007233467.3


Basic Information

Item Value
RNA id XM_007233467.3
length 2002
RNA type mRNA
GC content 0.49
exon number 5
gene id ctgf
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 50512953 ~ 50515944 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCTTTCTGGAATGAGCCTGAGACTACTTGCTGTGCTCTGCTTCAGCTTTTTCAGCTGGGTGGTAGCCCAGGAGTGCAGTGGCCAGTGCCAGTGCCCTAATACGCCCCCACAGTGTGCCCCAGGTGTAAGCCTGGTGCTGGATGCCTGCGGATGCTGCCGGGTGTGTGCCAAGCAGCTGGGAGAGCTGTGCACAGAGAGAGACGTTTGCGACCCTCACAAAGGCCTGTTCTGTGACTACGGTTCCCCAAGCAATCGACGCATCGGTGTCTGCACTGCTAGAGATGGTGCCACCTGTGTGTTCGGAGGGATGGTGTACCGCAGTGGTGAGTCCTTCCAGAGCAGCTGCAAGTATCAGTGCACTTGCCTGGATGGAGCAGTTGGCTGTGTCCCCCTCTGTGGAATGGATGTCAGGCTGCCCAGCCCAGACTGCCCTTCGCCACGCAGGGTCAAGGTGCCAGGAAAGTGCTGTGAGGAGTGGGTCTGTGACTCTCCACAGTCCAACACCTTCGTGGGCTCTGCTCTTGCAGCttacagagaggaagagacctATGGCCCAGATCTTTCCATGATGCGTGAGAACTGTCTGGTCCAGACCACAGAGTGGAGCGCCTGCTCTAAGACCTGTGGCCTGGGGATCTCCACTCGTGTCACCAACGACAACCGCGAGTGCCGCCTTGAGAAGCAGTCCCGCCTGTGCATGGTCCGCCCCTGCGAATCCCACCTGGAAGAGAGAATCAGGAAAGGAAAGAAGTGCATTCGTACCCCAAGAGTCTCCAAGCCCATGAAGTTCGAGATCTCGGGCTGCACCACCACCAAGGCCTACCGGCCCAAGTTCTGCGGCGTTTGCACAGATGGCCGCTGCTGCACCCCCCACCGGACCGCCACTCTGCCCATGGAGTTCAAGTGCCCTGATGGCCAGGTCATGAAGAAGCAGATGATGTTCATCAAGACCTGCGCATGCCACTACAACTGCCCCGGTGAGAACGACATCTTCGAGTCCATGTACTACAAGAAGATGCTCGGCGACATGGCGTGAGGTGGAGGAGGGACGGAAAGACAGAAGGAGAATCCGTCCAGTGACTgtccattttaaaatgaaaacagataTCCATCTCATATCTCCGCACAGTACTCTGTctgttactttttgttttttgttcttttcattttacacatgtccttttctgtgtttgttgtatgtgtttatgtgtttgtgtgttttgttttgtatcaCTCGAAACTGTAATGATGTACCCATGATGGTGGTTGCTTAGGGCTCTTTTTTGCCCTAAAGTGAGTAAGCGATTGTGGGTGGGTTGAAGGGTGGGGAGGGTTAGGGTTTAATGACAGGGCTTCGTTGGGATGCCCCTTAAAAAATAACTGCACTATAGCCTGACTTGGTGGCACCCCTTGTCACTGATTGGCCCGACAACGCTGAGGCCCCTTTCCCTAAACTGTGGTGGGCAAATCCTGACTTGGAGAGTGAGAATGGTGAAAGGTGAGGAGGGCGGCGGCTTTTTAACCTCAGAACGGGGGCCGAAACGCCTCACccaactgagagagagagagacatgaatGTGCTCTTGTATTCTTGTATTTAACAGTGCATCTCAATGCTGAACAGGAAGCCAGGAGGTGTTCCTGTAGCACTGAGAGTGCCATAGTTCAACTGACTGACTCCTCTAAGAGAAAGAGTTGTTTTtgttgtccaaaaaaaaaaaaagactggatGATTTGCAGCTTCAttccttttttgttgttttattttttgggttGCTTTTGTAACACTGTAGATAATGTACATATTTTGTAcagtttaagttaatttaaatttaaaaacgtGTCTGTTTTTTTCACTATGTGTTATGATGATAGCTTGTTTTGCTGACTTGACTGTGCTTGTTGCAGTTTGTGTACTATTTTATTGAGAAGTGTGACCAAAAAGTTACATGTTTTGAACTTTTGTAGtttggaataaaatattatattttttatataaa

Function

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0030903 notochord development biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG:

id description
K06827 CTGF, CCN2, IGFBP8; connective tissue growth factor (insulin-like growth factor-binding protein 8)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36700 lncRNA upstream 94173 50362734 ~ 50418780 (+) True G27322
TU36696 lncRNA upstream 102669 50409036 ~ 50410284 (+) True G27318
TU36691 lncRNA upstream 201187 50311533 ~ 50311766 (+) True G27313
TU36690 lncRNA upstream 224980 50287770 ~ 50287973 (+) True G27312
TU36687 lncRNA upstream 236446 50276299 ~ 50276507 (+) True G27309
TU36711 lncRNA downstream 30664 50546608 ~ 50549982 (+) True G27333
TU36751 lncRNA downstream 158613 50674557 ~ 50675496 (+) True G27369
TU36753 lncRNA downstream 186427 50702371 ~ 50703069 (+) False G27370
TU36757 lncRNA downstream 186427 50702371 ~ 50703121 (+) True G27370
TU36889 lncRNA downstream 456993 50972937 ~ 50973244 (+) True G27463
XM_007233468.3 mRNA upstream 104383 50339564 ~ 50408570 (+) True moxd1
XM_007254914.3 mRNA upstream 1612719 48897216 ~ 48900234 (+) True gja10
XM_007254912.2 mRNA upstream 1616974 48884002 ~ 48895979 (+) True casp8ap2
XM_007254899.2 mRNA upstream 1790043 48711573 ~ 48722910 (+) True ginm1
XM_022662098.1 mRNA upstream 1805004 48699613 ~ 48707949 (+) True LOC103042815
XM_007233462.3 mRNA downstream 190305 50706249 ~ 50723932 (+) True lrp11
XM_007255205.3 mRNA downstream 228939 50744883 ~ 50753961 (+) True nup43
XM_007255206.3 mRNA downstream 242081 50758025 ~ 50768239 (+) True lats1
XM_022662332.1 mRNA downstream 242081 50758025 ~ 50764088 (+) False lats1
XM_007255207.3 mRNA downstream 253919 50769863 ~ 50772162 (+) True lyrm2
TU36697 other upstream 172876 50339710 ~ 50340077 (+) False moxd1
TU36609 other upstream 1064732 49447845 ~ 49448221 (+) True G27238
XR_002649725.1 other upstream 1179031 49321421 ~ 49333922 (+) True LOC111191919
TU36385 other upstream 1770514 48741214 ~ 48742439 (+) True G27075
TU36265 other upstream 1871048 48555797 ~ 48641905 (+) False G26995
TU36768 other downstream 228963 50744907 ~ 50749937 (+) False nup43
TU36770 other downstream 253941 50769885 ~ 50772161 (+) False lyrm2
TU36920 other downstream 658544 51174488 ~ 51178374 (+) True G27489
TU37134 other downstream 1798081 52314025 ~ 52314266 (+) True G27683
TU37199 other downstream 1938487 52454431 ~ 52456164 (+) True G27729

Expression Profile