RNA id: XM_007233636.3


Basic Information

Item Value
RNA id XM_007233636.3
length 4522
RNA type mRNA
GC content 0.49
exon number 15
gene id ppp4r3a
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 68023937 ~ 68042368 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAACCCCGTACATGCTTTCTGAGGGGACCCAAGATGGCCGAACACTTACAGTGGGGCTAATAATTACTCTCGTCCAGACGGCGCGGTTTGATGGTGCTCGGCGGTTTGCCCGGGACGTTTGTTGTAGAGGGGAGTTTGTCGAGCTTGTCTGTTCAGCCGCTCCGGCTTCACACGCTCGTCTGCGTTTGAGGAAAGGCTGGTCCTTCCACGGCCCTCAGCCAGAACATGGCGGAACACTTGGCCAAAATATAAGCGTTAGCTAGCGGGGCTGCGAGCTGCTGCCGCTGCCGCCTTCTTATCATGAGCGCACGGAGCTGTGCGGGTTCCTACAGCCGCGTTCACACTTCCACAGGCAGGGCGGGATTATAATGGGGCAATAGAGGCGTTTCTTTCTCCTATATCAACTGGGTTATTAGCGCTAGTCGGAAGAATGTTTGGGGAGAGCAGATAGCCCGCTAGCTAACAGCTAGCTCAGCTCGTTAGCAGTGGTGGTGGGCTCGGTTGGAGGAATTAGGGCAGCTGAAAACGAGCCTCCTCTTCTCCTGTGAGCTGTGCGCTCCACCCGCGCAGATATCCCGGGTTCAGAGCCGGAGTCGGAGAGGAGAAGCGCGGCTGTGGTCGGCGACTCGGCGATACCGAAGggcactgactagctaactatGCTGCTGCGGACGgagtcaacacacacacagaccgctagcttagcctagccggCTAAGGCTAGACTGACTGGAGCAGCGCGCTAGCATCGACACCAGACGCAGCCGAGCGCTAGAGAGCTAAATGTCGCGTTTCTACAGAGAAGACTAAACAAGATACGCTTAAAGTAAAAGGGAGGGAGCCGCCTCCAACACCCAGATTTAACCAGGATAGTCTCACACCATCACCTGCTCCAGTGTTTACAAGCGACTCGCAAGAATGACTGACACTCGGCGGCGGGTGAAGGTCTACACTCTGAATGAAGACCGGCAGTGGGATGACCGAGGGACGGGCCATGTGTCCTCCGGATACGTCGAGAGACTCAAAGGCATGTCGCTGTTGGTGCGCGCCGAAAGTGACGGGTCTCTGCTGCTGGAGTCAAAAATTAACCCCAACACCGCCTATCAAAAACAGCAGGACACATTAATTGTGTGGTCTGAAGCAGAAAACTATGATCTGGCCctcagttttcaggagaaagcTGGCTGCGATGAGATCTGGGAGAAGATATGTCAGGTTCAAGGCAAGGACCCCTCAGTGGACATTACCCAGGAGCTCATTGATGAGTCAGAGGAGGAGCGCTTTGAGGACATGTCCTCCCCTGGGCTGGAGCTGCCTCCTTGTGAGCTCTCTCGTCTGGAGGAGGTGGCCGAGCTGGTAGCCTCGTCGCTGCCCTCGCCCCAACGGCGTGAAAAACTGGCCTTGGCACTGGAAAACGAGGGCTACATTCGCAAGCTACTTGAGCTGTTTCGTGTATGTGAAGACCTGGAGAACCGTGAAGGCCTACACCACCTGTATGACATCATCAAGGGCATATTCTTGCTCAACCGCACTGCACTCTTTGAAGTCATGTTCTCAGAAGAGTGCATCATGGACGTGATTGGCTGCTTGGAGTTCGACCCGGCCCTGCCTCAGCCACGGCGCCACCGTGAGTTCCTTACAACTACAGCCAGGTTTAAAGAAGTCATCCCCATCACAGACCCAGAGTTACGTCAGAAGATTCACCAGACATACCGGGTCCAGTACATCCAGGACATGGTGCTGCCCACGCCGTCCGTGTTTGAGGAGAACATGCTTTCCACCCTGCACTCCTTCATCTTCTTTAACAAGGTGGAGATTGTTGGAATGCTCCAGGATGACGAGAAGTTTCTAACTGAGCTCTTTGCACAGCTAACTGATGAAGCCACAGATGACGACAAACGGCACGAATTGGTTAATTTCCTGAAGGAGTTTTGTGCGTTTTCTCAgactttacaaccacaaaacaGAGATGCTTTTTTTAAAACGCTCTCAAATATGGGCATTCTACCAGCACTGGAAGTTATCCTGgggaTGGACGATGTGCAGGTGCGAGGAGCAGCCACAGATATTTTCTCCTATTTGGTAGAGTACAATCCTTCTATGGTGCGTGAATTTGTCATGCAGGAGTCCCAACAAAATGATGATgaTATCCTGTTGATAAATCTGATCATCGAACACATGATCTGTGATACAGATCCTGAGCTTGGAGGAGCTGTGCAACTAATGGGGCTGCTAAGGACCCTGGTAGACCCTGAAAACATGCTGGCAACTGCTAATAAGACTGAAAAGACAGAATTTTTAAGTTTCTTTTATAAACATTGTACGCATGTGCTATCTGCTCCACTTCTGGCCAATACCACTGAGGAAAAACCCAGCAAAGATGATTTCCAGACATGCCAGCTGTTGGCTCTGATTGTAGAGCTCCTCACCTTTTGTGTCGAACATCACACGTATCACATAAAAAATTACATCATCAACAAAGACATCCTCCGTCGAGTGCTGGTGCTCACTGCCTCCCAGCATGCTTTTTTAGCACTATGTTCGTTGCGTTTCATGAGAAAAATTATAGGACTGAAAGATGAGTTCTACAACCGTTACATAATGAGGAACTTCCTCTTTGAGCCAGTGGTCAAagcgttcctcaacaacggctCGCGTTACAATCTCATCAACTCAGCCATCATAGAGATGTTTGAATATGTCCGTGTGGAAGATGTGAAATCCCTAACAGCTCATATCATAGAGAACTACTGGAAGGCCCTGGAGGATGTTGACTATGTACAGACATTTAAGGGTCTCAAGCTCCGTTATGAGCAGCAGCGGGAAAGGCAGGACAACCCCAAACTTGACAGCATGCGGTCGATTCTGCGGAACCACCGGTTCAGACGGGATGCACGGACGTTGGAGGACGAAGAAGAGATGTGGTTTAACACAGATGAAGATGACCTGGAGGACGGTGAGGCAGTGGTGCCCCCTTCGGATAAGATGAAGAATGATGAGGATCTGATGGATCCCATTAGCAAGTTcatggaaagaaagaaattGAAAGAATCAGAGGAGAAAGAAGTTTTGACGGGAAAGTCAAGCCTGTCCGGGCGACAGAGTCCTAGTTTTAAGCTATCTTTCTCTAGTTCGCCTAAGTCTAGTTTGTCCTCGCCGCCCACAGCCTCTCTCCACCCTGGCTCACCAGGATCTCCCGGATCTCCTGGTACGGGGGCCAGAAACTCCCCGCCTATGGCAGCTGTCACCACTAAGAGTGGTTTGGTGGGACTGGTGGACTATCCGGACGACgatgaggaggatgaggatgaggacGATTCAGACAGTAAAGAGGGGAGTCCTCCACTGTCCAAGAAATCAAAGCTGAGCTCTTAAAGCACTCCCTGCCCAAATTGCCATGGTAAAGCTCAGAAGGGAGCCTTATCCACAGATTTCTTTCAGCGCTCAGCCTCGAACTCAAAACTGAACcaatatgaatgaaaaaaaaagaatgaatggaTTAAAAAGAACGACTGctgccccccacccccacctgcAGGAATCCAAGGGGTGCAATGTGAGGGATGGAGAAAGGGAGAgctagagagagggaggaaaagtaACGACCTCCAACCGAATAAAGGTGAAAATCTTCATGTGGAGAGTTAAAGTGCCAATTGGAGACAAGCAGAGGGAAAGACTTGAagtggacagagagagaagacaagGAGATAAAACTGGTTTTGGACAAATGATTTAAAAggatttaataaacaaaaataataatttcaaaaaGCTAAAGTACTTGGGGGTGAAAGACCTcacatacattacacacacgcacgcacactgAGACTGGCGCCCACACACAGAGCGTCCCAGGCTCGGACCAGGACACACTGCCCCCCGCCCCTCTCAGGGAAGGACGTCACATGACCCAAATGGGCCAGCCAATCCTGAACCACCACCCACCTTTGCTGACTCCATCtccatttctttctctccttcctcTACCCCTTTTCTGCCCTCCTTTCcccttatttttctttctgcgttcggtctttttcttttctttatttgtttctgGAGCCTGACAGCAGACTAGAACAGCAGAGCAGTCTGGGTTGTCATTGTTAATGATGTCATCGTTGTCCTCGTGGCTCAGCGGAAATTCTTCCTCTTTCAAAGCCAGcggtttcctcatttttttcctcgttctgttcttctcttcctctcccttttttttaaataaaaaagagacctGCCTTTAAATGTTCAGGACGTTTTCAGTCGCACTTGAACAGGTTTTTAAAACCTCATTAGGGGGAAGAGTTAGTTTTACCCTTTTTTTGCCCTTTGAAACTGcagattttttggaaaaatttgtAAGCCCGTCTTGATTAAAGATTGAGTGGAACTCTAGATGtgatttgaattttttttttccccttttgtcatatctttattttttttcttttacataagTGTACTCTTAGTTGGTGGGTATATTTGGGACCATTAAAAAGATCTTTGCTGTAATATA

Function

GO: NA

KEGG:

id description
K17491 SMEK, PPP4R3; protein phosphatase 4 regulatory subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42411 lncRNA upstream 36260 67987433 ~ 67987677 (+) True G31583
TU42320 lncRNA upstream 161664 67860633 ~ 67862273 (+) True G31512
TU42278 lncRNA upstream 369332 67654149 ~ 67654605 (+) True G31479
TU42195 lncRNA upstream 517065 67492744 ~ 67506872 (+) False LOC103027733
TU42428 lncRNA downstream 32829 68075197 ~ 68075581 (+) True G31595
TU42429 lncRNA downstream 54447 68096815 ~ 68097060 (+) True G31596
TU42469 lncRNA downstream 238972 68281340 ~ 68281596 (+) True G31629
TU42494 lncRNA downstream 582921 68625289 ~ 68660107 (+) True G31648
TU42572 lncRNA downstream 924111 68966479 ~ 68966810 (+) True G31715
XM_007233635.3 mRNA upstream 997 68020042 ~ 68022940 (+) True LOC103035359
XM_015601389.2 mRNA upstream 4946 68004234 ~ 68018991 (+) True LOC103035042
XM_022665254.1 mRNA upstream 94022 67878540 ~ 67929915 (+) True LOC103045824
XM_022678477.1 mRNA upstream 179303 67691441 ~ 67844634 (+) True hmcn1
XM_022665212.1 mRNA upstream 444856 67533816 ~ 67579081 (+) True swt1
XM_022678508.1 mRNA downstream 310059 68352427 ~ 68724643 (+) True nbas
XM_022665374.1 mRNA downstream 1161466 69203834 ~ 69215863 (+) True nr2e1
XM_007255677.3 mRNA downstream 1201350 69243718 ~ 69279965 (+) True afg1l
XM_022665386.1 mRNA downstream 1201350 69243718 ~ 69279965 (+) False afg1l
XM_022665393.1 mRNA downstream 1201350 69243718 ~ 69273322 (+) False afg1l
TU42422 other upstream 1003 68020040 ~ 68022934 (+) False LOC103035359
TU42315 other upstream 190722 67831820 ~ 67833215 (+) False hmcn1
TU42187 other upstream 526240 67497203 ~ 67497697 (+) True G31407
TU42094 other upstream 808751 67214305 ~ 67215186 (+) True G31355
XR_002649741.1 other upstream 2174175 65849127 ~ 65849762 (+) True LOC111191945
TU42555 other downstream 784275 68826643 ~ 68827572 (+) True G31702
TU42576 other downstream 1102650 69145018 ~ 69161883 (+) True G31718
TU42854 other downstream 2154557 70196925 ~ 70199742 (+) True G31939
TU42855 other downstream 2154557 70196925 ~ 70199742 (+) False G31939
TU42856 other downstream 2154557 70196925 ~ 70199742 (+) False G31939

Expression Profile