RNA id: XM_007235254.3


Basic Information

Item Value
RNA id XM_007235254.3
length 2198
RNA type mRNA
GC content 0.47
exon number 15
gene id taf1b
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41489377 ~ 41498110 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaTCCTGAAAGCCATTTTGGAAAACTGAGCGTGTAGTAAAGCGTGTTGTGGTAAATTTAAAACTGTGGGAGATACAGTGAGTGAAGCTGTCTAAACTCAGTTGAATGGATATGTCTCCTCCCTGAAACAACAcagaagtcattcagacatggACGAACATCTAACAgaGGGCTACAGTGAGCCCTGTAAGCAGTGTGGAGCTGTGTCCTGGGCGCTCTCAGATGGGTGTCAGTTCTTCTGCAGGAACTGCCACAATGTGATCGAGAAAACACAAGATGTTGTGGATGTATCCTCATTTAttctaaacaataaaatatcctCCATATCATCAAGCTCACGCAAGAAAACGAGAAGAGAAGGTGGACGAGAGTGGATGGTATGTGAAGGATTTCAGTTCATCCTAAAACTTCAGGCAGAAGCTTTGGTTGGTCTGGGTGTGTGCCCACAGTTTAAGaCAGATGTGCTCTGGGATTTCTGGAAGCGATACCTTCAGATAACCAGGCAGGCTTACACAAGATCACCAGTGAACAGTTTTACAAATACAGTGTACCTATCCTCTGAGAGTGAGCCGGAGTCTGCATTTCTAAGTGAAGcatcagatcagacagagcCTATGTCAGCCTCAGGACATTCCACTGATGGGAGATCTTCAGTGTGTTCAGGCTCTCTGGATGCCGCATGCTACCTCAGTGCAAAGGAGAGGAAGAGTCGCCAACTCATGAACATGCCCCGGACGCTGGCGCTGTGCCATCTGGCCCTGCTTTGGCTTCGGGAGGCCATCACACTGGCAGATTTGCTCAGGTTAGTGTCCAGGAGGCTCATTCCTTACATTAACGTCTATGAGGAGTTCCCGGAAGAGATGCAGTTTTATGGCAGGGATGCCATAATCTTTAGAGTGGAGACCATCCCCTCGTACAGAAAGGTGCATGGTGAGGCCCTGCAGATGGCTGAGATTCTGCAACTCCCTGCTTTCCCTCCTGTGACCTCTGACTGCCTCCTCCACCCGGCTCTACTCAGCCTCCGGTACCTGATGGAAGTTAACCTGCCTGATGAACTCCATTCATTGGTGTGCAGAGTAATAGAAAAATCAGCCATGGGAAAAGAATCGTTTCTGACTTTTAACCCTTCTAAGCCAAAGTCTACGTTCCTGTTCTATGACCTTCAAGCAGCAGCACTCATCATTGTGACCATGAAGCTTCTCTTTAAGCTGGACGATCACGTGGAGTGGACATTATCAAGGAAAGCAGTGAAAAAAGACGACCAAGGCAAGAAGAAAACTTCCAAGCAAGGCAGCAAGATGTTTAGTTTGAAAGCATGGTATATGACTGTGCATCCTGCTCTGGAGCGCgccagacagagagaagagcttTTTGAGGCTAGGCGACCATGGAAGTCCAAGAAGGTGCTCATTCCAGCAATGAAGCACAAGGCTGTGGTGCTAAAAAGACGACGTGTGGTTGAGCAGCTGCAGAGCAGTTTCCACACATTAACTGGCTCTGTTCCAGAGCAGCAGTCTTCCTCCCCGTCCAGCTTCCAGTTCCTCTGGGGACAGGAAGAGGATTCAGACGGACCCAGCCTCCACCACAAGCGCCTCAACTGCATGCTGGAGAAACGTGGAAAAGAAAAGTGGCTTGTCAACCAAGCGTACTGGCACACTGACCTGAAGCGCTGCCACAAAAAAGATTGTCGGGACCATTACTCTGAGCTGAAGCACAGTTTACCCAGGATGTACGTGTGGCTGCTGGGacttttctctttccttctgaGGGTCAGTGAGGCCCAGGTACATAAGGAAGTTGTTGAGGTAGAGCGACGCTTGCTGCTGAGGAAAGCTGTGCCTGAAGAAGATAACCataaacacagaaagagaaaggggaGAAAAACATCATCAAGCTTTTGATCGTTAAACTGTTTACCTCAACACAAATGAACAATCATTTTGCACATCTTGCCATTAACTGCCTTACGAAGATATTGTGCCCTGCATTGTTTACACTGACACAGACACATCTTTACTGTCTTTATCtctgttattttgagatatttgtTGCACATATTTCTCATTTATAGTGAGTATGATTTATACAGGACTTGTACAGGTCACTGACATAAATGACCAAGAGTCTGCCTTTACTTCATAGCCAGATATACTCCCTATATAAGAcccactcttaaaaataaagctttCTATGTGCTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006360 transcription by RNA polymerase I biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34094 lncRNA downstream 52735 41436041 ~ 41436642 (-) False arhgap11a
TU34108 lncRNA downstream 82590 41404010 ~ 41406787 (-) True G25381
XR_002652112.1 lncRNA downstream 86683 41402021 ~ 41402694 (-) True LOC111196423
XR_002652111.1 lncRNA downstream 86683 41402120 ~ 41402694 (-) False LOC111196423
TU33959 lncRNA downstream 239724 41244692 ~ 41249653 (-) True G25272
TU34089 lncRNA upstream 35809 41533919 ~ 41545501 (-) True G25367
TU34127 lncRNA upstream 40073 41538183 ~ 41539618 (-) True G25400
TU34218 lncRNA upstream 219111 41717221 ~ 41717780 (-) True G25473
TU34215 lncRNA upstream 221542 41719652 ~ 41729250 (-) True G25472
TU34219 lncRNA upstream 231721 41729831 ~ 41730469 (-) True G25474
XM_007235257.3 mRNA downstream 15626 41469369 ~ 41473751 (-) True klf11
XM_022685745.1 mRNA downstream 23676 41459608 ~ 41465701 (-) True rrm2
XM_007235255.3 mRNA downstream 38005 41447400 ~ 41451372 (-) True LOC103042935
XM_022685730.1 mRNA downstream 42912 41444016 ~ 41446465 (-) True LOC111196450
XM_007235258.3 mRNA downstream 46883 41436212 ~ 41442494 (-) True arhgap11a
XM_007235251.3 mRNA upstream 69086 41567196 ~ 41577260 (-) True cpsf3
XM_007235241.3 mRNA upstream 122889 41620999 ~ 41632164 (-) False LOC103038827
XM_007235240.2 mRNA upstream 122889 41620999 ~ 41630257 (-) False LOC103038827
XM_007235239.2 mRNA upstream 122889 41620999 ~ 41630257 (-) True LOC103038827
XM_007235249.3 mRNA upstream 236471 41734581 ~ 41738023 (-) True LOC103041202
XR_002652122.1 other downstream 46883 41437756 ~ 41442494 (-) False arhgap11a
TU33946 other downstream 270548 41214421 ~ 41218829 (-) True G25265
TU33508 other downstream 2031188 39455236 ~ 39458189 (-) True G24903
TU33467 other downstream 2142508 39339026 ~ 39346869 (-) False LOC103043888
XR_002652156.1 other upstream 358928 41857038 ~ 41865844 (-) False LOC111196508
XR_002652157.1 other upstream 358929 41857039 ~ 41865844 (-) False LOC111196508
XR_002652158.1 other upstream 358939 41857049 ~ 41865844 (-) False LOC111196508
TU34500 other upstream 1219556 42717666 ~ 42718389 (-) True G25678
TU34644 other upstream 1600712 43098822 ~ 43111401 (-) True G25785

Expression Profile