RNA id: XM_007236505.3


Basic Information

Item Value
RNA id XM_007236505.3
length 1751
RNA type mRNA
GC content 0.50
exon number 2
gene id fsbp
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 7089580 ~ 7093507 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTTCTCTCAGAAACGtctgtatatttacattcaGCCAAGCATCTTCCCAGTCCTTCCCCACCTACAAAACCAAACCAGCCCCAGTGAACGCCTGTCGATGCTTTCCGAGCTGTAGCAGAGTCTCCCTGTGTTTTTTCTAGCCTAATGCAGTCGGGTTTGTTATGTAGGTCAGGCCAGGCTTAAGCAGCTTTACTGAACCTGCGTCAGCTTAAGCTGAAAGGAATTTCAGCAAAGCCCTCCCCGGTAGGCGTGGGCCTAATCGAGGCTGGCCTAGTTAAGCCTGATTCTTTTTCTTAACgtccctctctctgtgtgtgagtgagtgagtgagtggagagagtgtgtgtatgagtgtgtgtgttgtgtaacaGAACCAAGCAGTGCAGCGCAGGGCTGCTTGCACATGTGTGAgtgttttcaagagagaaagagacagatagacagacaggtttgacagaagaaagaaagaaagatagagaggggAAAGGAAGCTAAGCAGAGCCTAGAGCAAGTCAAGACCAGCCTAGAGCCAAAATGTCTGCTTTGTTCATGACTAGCAGCATGGTTGGCAAGGCGCGCTCCTCAAACTTCACCCTGTCCGAGAAGCTGGACCTGCTGCGCCTGGTCCAGCCCCACATCCGCATTTTGGAGGAGCACACCAACAAGCATGCTGTGATTGTGGACAAGAACCGCTGCTGGGAGAGCATAGCCGAACGATACAACAGCCTAGGAGGCGAAAGGCCGCCCAGGACGGCTCAGGGGCTTCGGACACTCTACAAGAGACTCAAGGAGAGTGCCAAGCAGGAAGTGGTCCAGCGCAGCCACGCCCAGCCCGAGTACAGGGGCAGCATCTCGGAACCCACCAAGCGCATCATGGAGATGATCCCACATCTGTTTCACGCAGGGGATAAAGAGCACAACAGCCTGCACAGGTTGCAGTACAAGATAAGTTCACCAATAGAGCAGCCTGGCAGCAGTTCATCCCTTCCCGCTATGTCAGATTACGCACCGGTTGCAATGGCAGTCAGGGTGGAGTCCGAAGACGTCAAACCACCACCCGATCTCCCGATGCACGTATCCCGTGATTCACCTGTAACAATAACCACCCCACGCAGTCAGGACCCTATAGGACCGATGGAGAACGAGgttgaggaagaggaagaggaagaagaactCGTTTCGCATGTTTATGCAGCCTCCCTTTCACCCTGCCCCTCTTCTGTTCACCTTCCACTGTCACCTTCAGCAGCCCCCCCGAGGCGGAACCTCTACCAGAGGGCAGGAGTTCCATTCAGGAACCCGGTTCTGGAAGCGGAGTCGTTGCAGATGATGCGAGAAGAACACGAGCTGCTCCTGGCCAATCACAGGAAGCTTGGGCTGTAtctagaggaaaagagagagggactaAAAAGAAAGCAGCAGTTAGAGGAGGAGCTCCTGAGGTCTAAGGTCAAAGTGGAGAAACTGAGGGCGGCTCGACTGAGGCACGGACTGCCGCTAATGTGACGAATGCACAGAATGTGGTGTAAAGGGAATAAACCCTCCAGACGTGTGTCATCAAATGACCATCTTCTGCTCCAGTGAAAGGACTTTTGTTATTGTacagtttttatacattttcttattcttattcttattcattaaaaacaaaactaaatccGTTGTTATGTGTCTGTGTATACGACAGTGGACAGAGTTTAGTTCTGTTTCACTTCCTGTAATAAAtggatatttgtttttttattattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23073 lncRNA downstream 73736 7012003 ~ 7015844 (-) True G17093
TU23065 lncRNA downstream 88424 6996398 ~ 7001156 (-) True G17086
TU22904 lncRNA downstream 170923 6918196 ~ 6918657 (-) True G16965
TU22901 lncRNA downstream 190100 6899211 ~ 6899480 (-) True G16962
TU22889 lncRNA downstream 306349 6775573 ~ 6783231 (-) True G16951
TU23102 lncRNA upstream 55070 7148577 ~ 7155902 (-) True G17117
TU23106 lncRNA upstream 92686 7186193 ~ 7186801 (-) True G17121
TU23107 lncRNA upstream 93358 7186865 ~ 7187855 (-) True G17122
TU23109 lncRNA upstream 112505 7206012 ~ 7210744 (-) True G17123
TU23132 lncRNA upstream 227992 7321499 ~ 7322308 (-) True G17144
XM_007236504.2 mRNA downstream 23667 7057432 ~ 7065913 (-) True LOC103045397
XM_022679643.1 mRNA downstream 42662 7017957 ~ 7046918 (-) True cdh17
XM_022679618.1 mRNA downstream 192760 6675076 ~ 6896820 (-) True galnt1
XM_022679620.1 mRNA downstream 192760 6679799 ~ 6896820 (-) False galnt1
XM_015604595.2 mRNA downstream 545305 6534859 ~ 6544275 (-) True sec61b
XM_007236511.3 mRNA upstream 18543 7112050 ~ 7139126 (-) False virma
XM_007236510.3 mRNA upstream 18543 7112050 ~ 7139126 (-) True virma
XM_022679674.1 mRNA upstream 85909 7179416 ~ 7236402 (-) False LOC103025538
XM_022679678.1 mRNA upstream 85909 7179416 ~ 7236401 (-) False LOC103025538
XM_022679669.1 mRNA upstream 85909 7179416 ~ 7236401 (-) True LOC103025538
trnat-ugu_80 other downstream 100769 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 101321 6988187 ~ 6988259 (-) True trnat-ugu_79
trnat-ugu_78 other downstream 101873 6987635 ~ 6987707 (-) True trnat-ugu_78
trnat-ugu_77 other downstream 102425 6987083 ~ 6987155 (-) True trnat-ugu_77
trnat-ugu_76 other downstream 102977 6986531 ~ 6986603 (-) True trnat-ugu_76
TU23350 other upstream 835782 7929289 ~ 8007239 (-) False LOC103026934
TU23805 other upstream 2468920 9562427 ~ 9562725 (-) True G17638
TU24000 other upstream 3153168 10246675 ~ 10247318 (-) True G17792
TU24180 other upstream 3922522 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 3922522 11016029 ~ 11080151 (-) False LOC103047439

Expression Profile