RNA id: XM_007236513.3


Basic Information

Item Value
RNA id XM_007236513.3
length 3208
RNA type mRNA
GC content 0.49
exon number 15
gene id esrp1
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 7142368 ~ 7172757 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAAAAACGAGCACAGGCGAGCAGCCATTACTCCCGGACTGGCGGACATTCGCTTCAGCATCGCTTCAGCAGAGATAAACGGGGGAAATAAGGAGCGAAACCGCTGAGTTTACCTGTCCAtaggtgtggggtgtgtggggCCCTCACTTCACTTCCGTCACCTGGAGTCGGTGGCTGGGGATTTCTTCACCTTTCTGACGCTTagagttatttttatttccacgGTTTCTCTTTTAAAAATGACGGTAAATCCAGAGAACTTGGTGCTGTTCTTCACCACGACGTGCGGGGCGAGCGGCGAGCTGCTGGGGTCAGACGAGACCGAGGCGGTGCAGCTAGTCTGGCAGGTCCTCAATTTAGTCACTAAAAAGCCCGGACGGGTGAATGAAGTGCTGGTGAAGCCGGAGagcctgtgtgtgtctgaggAGTGTGTGGAGGTCAGTGGGGTCACCACTGAGGCCCTCAGCTCTGCGGCCCCTCTGGAAGAGGCTCTCAACCAGTTCAACGAAAGGTTGTGTTcagaaataaacacagatgCAGCCAACTCCTTCTGTCTCTGTACTGATGGTCAGCTGCACCTGCGTCAGGTCCTGCATCCAGAGGCTTCCAACAAGAATGTTCTGTTGCCCGAatgtttcttctcttttttcgaCCTTCGGAAAGAGTTCAAGAAATGCTTTCCATCTGAAGCTGATCATAAGGAATTGGATCTTAAATTCATGACAGATTACCTGAATTTGAGTGAGGATTCCTCTGATCAGGTCTTCACTGCACAAAAGATTCACCAGATGTCCAGCATTGCCCAAGCACTCATCTCTGAGCCTACCTGTCATGTCTTCTCTTGCCCAGAGAAAGTAAATGAGAAGTTTGAAACCGGTACATGCAGCAAGATGGAGCGGATAGATGACAACACTGTGATCAGGGCACGAGGTCTTCCCTGGCAGTCCTCAGACCAGGACGTCGCACGTTTCTTCAGGGGCCTCAACATTGCCAAaggagGTGCTGCTCTGTGTCTGAATGCTCAAGGCAGGAGGAATGGCGAGGCTCTAGTACGGTTCGAGAGTGAAGAGCATCGAGACTTGGCTTTGCAGAGACACAAACATCACATGGGCTCCAGATATATTGAGGTTTATAAAGCCACAGGTGAAGACTTCTTAAAGATTGCAGGAGGCACCTCTAATGAAGTTGCTAACTTCTTGTCGCGGGAGAATCAGGTGATTGTACGTATGCGTGGGCTGCCGTTCACGGCCACAGCGGAGCAGGTTCTGCAGTTCTTCTCTCCATCGTGTCCGGTGACGGACGACGGCGAGGGCATTTTGTTTGTGCGCTTTCCCGATGGCAGGCCCACCGGGGACGCCTTTGTTTTGTTCTCCTGTGAGGAGTACGCTGAGAATGCACTTAAAAAGCACAAGGAGATCCTGGGCAAGAGATACATCGAGCTGTTCAGAAGCACTGCAGCCGAGGTTCAGCAGGTATTAAACAAGTACTCTTCGGCTCCGCTGATTCCAGTTGCCCCCTCCCCGATCCTGCCGATTGTGCCACAGCCCACCTTTGTGCCATCGCCAGCTGCTATTGCTGCAGTAGTTGGAACGAGGGACTGTCTGAGACTAAGGGGTCTGCCCTATGACGCCTCTGTTCAGGACATACTGCTCTTCCTGGGAGAGTACACTGCTGACATCAGACCACATGGAGTACACATGGTGCTCAACCAACAGggACGCCCTTCAGGTGATGCGTTCATCCAGATGCGGTCAGCAGAGAGGGCGCACCTGGCGGCACAGCGCTGCCACAAGCGGAGCATGAAGGAGCGATATGTGGAGGTATTCCCCTGCTCGGCGCAGGAGATGAACATCGTGCTGATGGGAGGCTCGCTCTCCAGGAGTGGCCTCTCGCCGCCGCCATGTCTCACTCCTGCATCGTACTCTTTCCCTCCTGGAGGAGCTGTACTTCCCACTGGAGCATTACTTCCTGCCGGGGCAGTTCTTCCAGTGGAGGCAGCACCTGTATACCCCTCCCAATTCCTGTTGAGTCCTCGCCCCCTAGCACCTGCTTTCTACCCAGCAACCAACCAGATGTATATGAACTACACTGCCTACTATCCAAGTCCCCCAGGCTCCCCACCCAACATGGGCTACTTCCCCACAAGCCACGCCCAATCAGCAGGATCTGTCCTCTCCAGTCCGCCCACAGCAATGATCAGGATGCAAAGCCACACCTCTTCCCATGCCTACCCCAACGGAGTTAAAGAGTTTCTCAGCATGGTGCAGAGCTATCAGcccaGCAACAGTGATGCCTTGGTAACCCTCCCCTCCCTTCTGCCAGCCAAACAGTCCATTGGAGACCAGAGCCTTGGAGGCGGAGCTTATCTGGACTTGCAGCTGCTACATGCCACTTCAATGTAAAATTATAGACCAGCCCCCAGAACCGCAGCAAGTTATATCACTCTAGCTATTTATGTGAAACCTATAAAAAGAATATATGTATttgaaattagatttttttatgtattgcacactgtgtattATTTTGCATTAGTATATGCATTAGATATGTTCTCCTCATAGGCAAATACTGGacatgtgtgtttctgttttgtgcgagtgtgtgagagagtgtgtgctcAAGTGTGGTAGAAAGATGAACTCAATCACTCAGGAAATCCATCAGTGACAATCAGCAGACTCTGCTTAGTTTCTGCCTCCTGCATCAAAACAGACACTTTCCTTTTTCCTgtaattgttcatttttttattatcagttaAAGCCAAAGCATTAGATTTCTACGAGTCTatgagtgagtgtatgtgtCATTTCCTTCAAACATGCTGGTCTgcgcgtgagtgtgtgtgtgtgtgtgtatgcctgCATGTATGAGTGTTTGTACCTATATCCCAACTGATGTGACTGTActatgagtatgtgtgtgtttttatatacagtactgtgcaaaagtcagGGAGTGCCCTTCATTtttaactgtgttaaaaaatgAGCTATTCAATTTTTggacatttattaatataaaaaaatacacaaaaaagtaGCTGCTAAATCTAAATCAATAACTGAATCTAATCTAACTTTTATATGCCCTTCATTCTTTTCAGGAAAcctactttcactttctcttcAGGGAGATTCTTCCACAGCTTCAAAGTTCAGTCTAAAGGCAGAAACACACTAagagcaagacaaaaatacaaaccAAC

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22916 lncRNA upstream 93071 6948070 ~ 7049298 (+) True G16969
TU22914 lncRNA upstream 122137 7004126 ~ 7020232 (+) False G16969
TU22912 lncRNA upstream 215350 6926771 ~ 6927019 (+) True G16968
TU22749 lncRNA upstream 240458 6901222 ~ 6901911 (+) True G16845
TU22742 lncRNA upstream 342233 6689720 ~ 6800136 (+) True G16839
TU23037 lncRNA downstream 164674 7337431 ~ 7339982 (+) True G17062
TU23046 lncRNA downstream 178861 7351618 ~ 7355186 (+) True G17070
TU23167 lncRNA downstream 256251 7429008 ~ 7429319 (+) False LOC103032995
TU23172 lncRNA downstream 263144 7435901 ~ 7436615 (+) True G17180
TU23206 lncRNA downstream 460155 7632912 ~ 7658380 (+) True G17204
XM_022679656.1 mRNA upstream 30424 7101581 ~ 7111945 (+) True LOC103046513
XM_022679659.1 mRNA upstream 30424 7101581 ~ 7111945 (+) False LOC103046513
XM_022679661.1 mRNA upstream 30424 7101582 ~ 7111945 (+) False LOC103046513
XM_015602247.2 mRNA upstream 141177 6991989 ~ 7001192 (+) True pdp1
XM_007236515.3 mRNA downstream 126914 7299671 ~ 7307085 (+) True LOC103022302
XM_007236519.3 mRNA downstream 138545 7311302 ~ 7323743 (+) True LOC103022811
XM_007236521.3 mRNA downstream 154581 7327338 ~ 7333674 (+) True LOC103023753
XM_022679716.1 mRNA downstream 209393 7382150 ~ 7418932 (+) True megf8
XM_007232449.3 mRNA downstream 249814 7422571 ~ 7427666 (+) False LOC103032995
trnat-ugu_6 other upstream 474476 6667821 ~ 6667893 (+) True trnat-ugu_6
trnat-ugu_5 other upstream 482896 6659401 ~ 6659473 (+) True trnat-ugu_5
trnat-ugu_4 other upstream 485741 6656556 ~ 6656628 (+) True trnat-ugu_4
trnat-ugu_3 other upstream 487424 6654873 ~ 6654945 (+) True trnat-ugu_3
trnat-ugu_2 other upstream 488713 6653584 ~ 6653656 (+) True trnat-ugu_2
TU23483 other downstream 1502862 8675619 ~ 8716787 (+) True G17414
TU23546 other downstream 1743829 8916586 ~ 8921656 (+) True G17443
TU23528 other downstream 1745218 8917975 ~ 8921656 (+) False G17443
TU23538 other downstream 1759950 8932707 ~ 8950159 (+) False G17443
TU23933 other downstream 3108467 10281224 ~ 10281976 (+) True G17745

Expression Profile