RNA id: XM_022664088.1


Basic Information

Item Value
RNA id XM_022664088.1
length 3831
RNA type mRNA
GC content 0.49
exon number 19
gene id LOC103043586
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 61831841 ~ 61890729 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGCTGCTGGATCAATGAGCTGCCAGCACAAAAACGGAGTAGCTGTCTGTACTCTTGCCATTCCCATCGCCAATGCTAGGATGAAGGGCTCCCACTCGGTCAAGAGACATCGCATCACCATAcacaCCTCACACAGTGATGGGCGGAATGAGGCTGCCACGCGGGCCAGCCGCACCGGAGCACGCTGCAGGAACTCCATCGCCTCCTGTGCCGACGAGCAGCCACATATCGGCAACTACCGGCTGCTCAAGACCATCGGCAAGGGCAACTTCGCCAAGGTCAAACTGGCGAGACACATTCTCACAGGGCGAGAGGTGGCCATAAAAATTATCGATAAGACGCAGCTTAATCCTACCAGCCTCCAAAAGCTCTTCCGGGAAGTAAGAATAATGAAGATTCTAAACCATCCAAATATTGTAAAGCTGTTTGAGGTCATAGAAACAGAGAAAACCCTTTATCTGGTGATGGAATATGCCAGTGGAGGGGAGGTTTTTGACTACCTCGTAGCGCATGGTCGAATGAAGGAGAAGGAGGCCAGAGCTAAATTTAGACAGATTGTATCAGCTGTACAGTACTGCCATCAAAAACACATCGTGCACAGAGACCTCAAGGCAGAGAACTTGCTGCTAGATGCAGATATGAACATTAAGATAGCAGACTTTGGCTTCAGTAATGAATTTACGTTGGGCAACAAGTTGGACACATTCTGTGGCAGTCCGCCATATGCAGCCCCGGAGCTCTTTCAGGGCAAGAAGTACGATGGACCTGAAGTAGACGTCTGGAGCCTGGGAGTCATCCTCTACACGCTGGTCAGCGGCTCGCTGCCCTTTGATGGCCAGAACTTAAAGGAGCTGCGGGAACGAGTGTTGAGGGGGAAGTATCGTATCCCCTTTTACATGTCCACCGACTGCGAAAACCTCCTCAAGCGCTTCCTGGTGCTCAACCCATCCAAGCGGGGCACACTTGAGGTGAGAGAAGACGGCgaaaatCAAATTATGAAGGACCGATGGATCAATGCTGGCTTTGAGGAGGATGAACTCAAGCCTTTTGTGGAACCAGAGCTTGACATCTCGGACCAGAAGAGAATAGACATAATGGTGGGGATGGGTTATTCTCGTGAGGAAATCCATGAGTCTCTGACCAGAATGAAGTACGATGAGATCACCGCCACTTACCTGCTACTAGGAAGGAAGCCCTCAGAGTTGGAGGCCAGTGACTCGAGCTCCAGCAGTAACCTGTCTCTGGCCAAAGCTAGACCAAACAGTGAGCACAATAACAGCCAGTCACCGTCTCACCTTAAAGTCCAGAGGAGCATCTCCAACCAGAAACAGCGCCGTTACAGTGACCAGGCTGGTCCAGCCATTCCTGCAACAGCTTACCCTAAAAGAAGCCAAACCACCACACCTGATGGTGAGCACAAAGAGGAGAGCACTGCTCAGCCACGCAAGTCTAACTCTTCTGGTAGCCGTGGCATGGCCCCGGCTAGCCCCCTGCTGGGCAACGCCAACAACCCAAACAAGGCCGACATTCCTGACCGCAAGAAGGGCTCTACCACTCCTGGGGGTAATTCTGTGTCTGGCGGGATGACCAGGAGAAACACGTACGTCTGTAGTGATCGTAGTGCTGGGGACCGCCACGCTGTCATCCAGAACGGCAAAGAAAACAGCCTGAACGAGATGTCAGCGTGTGCTGCCACGAGTCCGACATCGTACACCGCAGCCCTCACTGCCTCGTCCGCCTCGGTCCGCCTGAGGCACCAGAAGGCCACGGCACTTTCCGCTTCGGGCCACACCTGCCGCTCTGCTCTGCCCCCTAGTGAAGGCGCTGCTGAGTTCTTCAGGCCTAATACGACTACAGCCTCTGGCCAGCGAAACCCCGGAGCCTCCACCCACAGCATCAGCAGCGCCACACCGCCTGACCGCTTACGTTTCCCACGAGGCACAGCCAGTCGTAGTACATTCCATGGAGGCCAGTTGAGGGAGCGACGTACAGCCACCTACAACGGACCACCTGCCTCCCCCACCCTGTCCCACGATGCAACACCCCTGTCCCAGTCACGCAGCAGGGGCTCCACAAATCTCTTCACCAAGCTCACCTCAAAACTCACACGCAGaaACATGTCATTCAGATTTACCAAAAGACTTCCAACAGAGTTTGAGAGAAATGGGAGATATGAGGGCTCAAGtCGAAACGTGTCTGGGGATCAGAAGGAGGATCATAGAGACACCAAACCGCGCTCGCTGCGCTTCACCTGGAGCATGAAGACCACGTCGGCCATGGAGCCCACCGACATGATGCGCGAGATCCGCAAGGTGCTGGACGCCAACAACTGTGACTACGAGCAGCGTGAGCGCTTCCTGCTCCTCTGTGTCCACGGTGACGGCCATGCCGAGAGCCTGGTCCAGTGGGAGATGGAGGTGTGCAAGCTGCCCCGCCTCTCACTTAACGGCGTGCGCTTCAAGCGGATATCGGGAACATCCATCGCATTCAAGAACATCGCATCAAAAATCGCCAACGAGTTAAAGctgtaaaaggaaaaaaaagtatatatgtaTCTGGAgtcaaaaatgtgaaaaagaatCAAACGTGGCAAAAGGACAAAGGCACACAAAACTACTATAATCAAGTTGTacattcttttcatttttttattttgttgacaAAAAAGTAGCAGATTCAAGGATTGTTCTGTCAAACACTCACAAAAGTATGTAATGAAAATAATGTATAGAATCATGCCTTAGGCAATAATGTCCTGCGTTgaagcattattattttaattattattatttttatttttattattgattggAGCAACTGGTGGTCTAAAGATATTTGAACAGAAGGcgttattaattttattttcgtTCATGCACTACTGCATTAGTATCCCTATAAGCCTAAAGTTTAACCCCCTTGACGTAAAACACACGGGCATGACAGGAAGTCAGTGTGTTTCTCTTTAGAATTACCCTGGTCTCTTTTTGATGCCAGGCAAACCAGTCGGCCacagtattgtgtattgtgttttagATAGGATTATTATTTGCACCTCTTGCCCCTGCGCTCCTCAACGCTCATCTAGGGAAGATTCACCTTCTCCCCTAATTAACTCcttcacctcaactctcctgtacCCCCACCAGTATAACGAGGCAGGAAGTGACTGGGACCTAAAGTGTTGTGCTCTTCTTTGTTCTACTTGATGCACAGGACCTGGCGGGCTTCATCACTGGTGCCATGGAAACGACTCGCATGCATAGCTTAGTGCAGTCACACAAAGGGGGAGCAGACAGTCAACGcacttcaataaaaaaaaaaaaaaaaaagagaaacaccCTCTCATGGCTTCACTGCTGCAATGGGGTGTGGGACTTTGAGTCTAATGATtttgtaataaagaaaaaaatagacttGCTGAGATCAGGACTATTTTCCTTCCTGATCCATTTGAGTATTTAGTCTGTTTTTTTGCCTCGTTTTTGTAACAGATATCAAATGTtactaaaatgttgtttgtacTCTGACAAGGCGGAGACAGCCCACAACAGAGTCGGATCGCCAAGTCGTTCTGGGACATACTTCAAAAATACAAGTTGTCATTTTCAGGTTCCTCAGTGTTCACTTCCATCCCTAAGAAACAATggcactgttttcatttttgtttttggaatGTAAATAATGTACTTTAGTTTTGCAACCGCTACGTATTGATAtacttcctctttttcttttctaagtCTGGCTGTGAGTCGGAAAACCATGGAAATTAATGTACTCATCACAGGTTAAGGTTAATCAGTGTCTCCATTAAAACATGCTAAAACTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40118 lncRNA downstream 448007 61367275 ~ 61383834 (-) True G29937
TU40110 lncRNA downstream 466963 61292975 ~ 61364878 (-) False LOC103029720
TU40111 lncRNA downstream 503723 61307103 ~ 61328118 (-) True G29930
TU39972 lncRNA downstream 938790 60892696 ~ 60893051 (-) True G29819
TU39956 lncRNA downstream 1038050 60792776 ~ 60793791 (-) True G29803
TU40213 lncRNA upstream 20815 61908703 ~ 61917427 (-) True G30001
TU40214 lncRNA upstream 20815 61908703 ~ 61917427 (-) False G30001
TU40228 lncRNA upstream 48842 61936730 ~ 61937164 (-) True G30011
TU40231 lncRNA upstream 62529 61950417 ~ 61979462 (-) True G30014
TU40241 lncRNA upstream 73862 61961750 ~ 61966803 (-) True G30017
XM_007238744.3 mRNA downstream 16255 61707691 ~ 61815586 (-) False LOC103042845
XM_015602853.2 mRNA downstream 38211 61707691 ~ 61793630 (-) False LOC103042845
XM_007238745.3 mRNA downstream 53556 61707691 ~ 61778285 (-) False LOC103042845
XM_007238743.3 mRNA downstream 53556 61707691 ~ 61778285 (-) True LOC103042845
XM_007230937.3 mRNA downstream 401562 61369995 ~ 61430279 (-) True nudt14
XM_022664198.1 mRNA upstream 108465 61996353 ~ 62008626 (-) True LOC103031530
XM_015601215.2 mRNA upstream 121919 62009807 ~ 62039839 (-) False LOC103031849
XM_022664205.1 mRNA upstream 121919 62009807 ~ 62025657 (-) True LOC103031849
XM_007233017.3 mRNA upstream 158803 62046691 ~ 62057863 (-) True LOC103030167
XM_022668152.1 mRNA upstream 325272 62213160 ~ 62214666 (-) False LOC111191939
XR_002649735.1 other downstream 1462227 60369046 ~ 60369614 (-) True LOC111191938
TU39714 other downstream 1669817 60157538 ~ 60162024 (-) False LOC103034188
TU39539 other downstream 2393543 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 2897052 58932963 ~ 58934789 (-) True G29317
TU39086 other downstream 3657137 58169321 ~ 58174704 (-) False LOC111189852
TU40670 other upstream 1322393 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 1322393 63210281 ~ 63256634 (-) False fryl
TU40672 other upstream 1322393 63210281 ~ 63231566 (-) False fryl
TU40747 other upstream 1442156 63330044 ~ 63334846 (-) True G30376
XR_002649174.1 other upstream 1545904 63433792 ~ 63465756 (-) False usp46