RNA id: XM_007239520.3


Basic Information

Item Value
RNA id XM_007239520.3
length 821
RNA type mRNA
GC content 0.47
exon number 8
gene id itpa
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65986525 ~ 65989450 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTCGCTCGGCGGGCTGCTGTACCGGTCCGGCGGGGTGACGGGACGTGGAGGAAAGCATGGCAGTGCCGGCCGGGAGATCCGTGGTGTTTGTGACTGGAAACGCCAAGAAACTCGAGGAGGTTATCCAGATCCTTGGGGACAAATTTCCCTACAAACTTATTTCTAAGAAGATtgattTACCTGAATACCAAGGGGAACCAGATGAAATCTCAATACAGAAGTGTCAGGAGGCAGCAAGACAGGTAGATGGGCCGGTGATCGTGGAGGACACCTGCCTGTGTTTCAGGGCACTGGGAGGGCTACCAGGGCCATACatTAAATGGTTTTTGGATAAACTGAAGCCTGAAGGCTTGTATAAGCTCCTGGCAGGTTTTGAGGACAAATCTGCTTGGGCTCTATGCACATTTGCTTTTTGTGCTGGCAAAAAAGAACCTGTTCAGCTCTTTAGAGGAATCACTGAGGGCCACATTGTAGAGCCCAGGGGACCAAGGGACTTTGGGTGGGATCCCTGTTTCCAACCAGAGGGATATGATAAAACATATGCTGAGCTCCCAAAGGAAGTGAAGAACAAAATCTCCCACCGATACCGTGCGCTGGCAGCCATGTCTGAACACTTCTCCAGCCTGAACGGTGAACCAGCAGACAAACGGCCCAAACAGGATGACTGAAAGTCTGTTAGTCATTAATCTGTCTATTTAATGTTTCAGCATTTTGTCAGCTGGATGCACTACGATAGTTAATAAATATGCTGTTTGTAAACGGTTTCAACACTTAATCCATCCGATGacttttataataaaacatattgtgtAACATATTA

Function

GO:

id name namespace
GO:0009117 nucleotide metabolic process biological_process
GO:0009204 deoxyribonucleoside triphosphate catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0047429 nucleoside-triphosphate diphosphatase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K01519 ITPA; inosine triphosphate pyrophosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41729 lncRNA downstream 61828 65924231 ~ 65924697 (-) True G31073
TU41725 lncRNA downstream 63158 65918392 ~ 65923367 (-) True G31070
TU41704 lncRNA downstream 100358 65885468 ~ 65886167 (-) True G31053
TU41705 lncRNA downstream 100563 65885468 ~ 65885962 (-) False G31053
TU41706 lncRNA downstream 102912 65883267 ~ 65883613 (-) True G31054
TU41773 lncRNA upstream 15443 66004893 ~ 66005868 (-) True G31102
TU41780 lncRNA upstream 34765 66024215 ~ 66069347 (-) True G31108
TU41782 lncRNA upstream 36600 66026050 ~ 66038372 (-) True G31109
TU41797 lncRNA upstream 83883 66073333 ~ 66076356 (-) True G31118
TU41799 lncRNA upstream 90494 66079944 ~ 66080258 (-) True G31120
XM_007259465.2 mRNA downstream 21240 65947634 ~ 65965285 (-) False vamp4
XM_015608435.2 mRNA downstream 21240 65947634 ~ 65965285 (-) False vamp4
XM_007259463.2 mRNA downstream 21240 65947634 ~ 65965285 (-) False vamp4
XM_007259464.3 mRNA downstream 21240 65947634 ~ 65965285 (-) False vamp4
XM_015608434.2 mRNA downstream 21240 65947634 ~ 65965285 (-) False vamp4
XM_022664966.1 mRNA upstream 402187 66391637 ~ 66430046 (-) True nt5e
XM_022664975.1 mRNA upstream 558540 66547990 ~ 66674798 (-) True mei4
XM_022665059.1 mRNA upstream 873093 66862543 ~ 67044318 (-) False LOC103031958
XM_022665052.1 mRNA upstream 873093 66862543 ~ 67044318 (-) False LOC103031958
XM_022665044.1 mRNA upstream 873093 66862543 ~ 67044318 (-) False LOC103031958
trnad-guc_8 other downstream 888852 65097602 ~ 65097673 (-) True trnad-guc_8
trnad-guc_7 other downstream 893376 65093078 ~ 65093149 (-) True trnad-guc_7
trnad-guc_3 other downstream 913712 65072742 ~ 65072813 (-) True trnad-guc_3
trnad-guc_2 other downstream 914310 65072144 ~ 65072215 (-) True trnad-guc_2
TU41381 other downstream 1199280 64783508 ~ 64787245 (-) False LOC103036530
TU42030 other upstream 873015 66862465 ~ 66891619 (-) False LOC103031958
TU42210 other upstream 1434422 67423872 ~ 67432424 (-) True G31424
TU42226 other upstream 1514299 67503749 ~ 67528337 (-) True G31437
trnai-aau other upstream 1668015 67657465 ~ 67657537 (-) True trnai-aau
trnai-aau_1 other upstream 1668176 67657626 ~ 67657698 (-) True trnai-aau_1

Expression Profile