RNA id: XM_007239522.3


Basic Information

Item Value
RNA id XM_007239522.3
length 3183
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC103032944
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 71180928 ~ 71189975 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gTTTTGGGGGGGAGCTGTTGGGAGAAGTTTGTGGAGGAGAGCGGTGGTTTGTGAAAGTTGTGCTCGGCTGAAGCGGGAGGTTTAGGGGGAGATCTGGTGGTGTTGGTGTGAGCGCCAGGGATCTGCtgtaggttagttagttagattagttagttatttagttaataaaggttaaatgatgtgtgtgtgtgatgagtcTGTGCTGCGGGCGCTGCTGTTGCTGGTGTCGGTGTGCGTGTCTCTGGCCGGagctttctctcagtctctggACAGCGACTTCACCTTCACTCTCCCCCCGGGACACAAAGAGTGCTTCTTCCAGACCATGAGGAAAGACGCCTCCCTGGAAATCGAGTATCAGGTTCTTGATGGGGCTGGTCTGGATGTGGATTTCTACTTGTCTTCCCCCAGTGGTCATGTGTTAGTGTCTGATTTCAGAAAGTCAGATGGAGTTCATACAGTGGAGACAGAAGAGGGGGACTACATGTTCTGCTTTGATAATACATTCAGCACTGTATCTGAAAAGATCATCTTCTTTGAGCTGATTTTGGACAATATGGATGATGGGCAAGACCCAGAGGACTGGAAAGAATTTGTGCAAGGAGCTGACCTGCTGGATATGAAGTTGGAGGACATCATGGACACTATAAACAGTGTGAAGGCACGCTTGGGAAAGAGTCTTCAGATTCAGACAGTGCTGAGAGCCTTTGAGGCTCGTGACCGCAATCTGCAGGAGAGCAACTATGAGCGTGTGAACGTCTGGTCCTGCACCAACGTCGTGCTGATGGTGGTGGTATCCTGCATCCAGGTCTACCTTCTGCGCAGCCTGTTTGACGACAAGAGGAAAACACGCACATAGCCCACGGGCTTCTTCTGTACTAACctctgggagaaaaaaaaatacccttGTTTGGGACTGAAGATGGACACagttctctctcccctctctctctgtagaccCTTTACTTTTCCACTTCCTGTCTACTTTTATTCAATGAAGACAATCAATTTCTACTCTAGCTGAGCCAAGAAACAGTCTAGGATGTTtctcagccaatgaaaaaagagATAAGCTGCTATTGCGAGTTCACAAGAAGCAGGATTTCTGAGGGTTCTTTTATTTAACATGAGCAAAGAATCAATGGACTGATACTTTTGCAGTTTCTTATAATACCCTTTTTATACATGCCTAAGTTTTGTTAACCCATTATCTCTGCCTCTAACTGTTGAAACTATGACAAGCACTGACACATAATGACATCTTTTTAGAGCAGCATGTTAAACATGGTATATGGAGAATGTGAAGTAAAGTGTGggaaaaatgtttcatgttgaGAAAATAATGGTCTGGTAAACGGTTAAAAGAACCAGTGAAGATGAACTGTGCTTACCAATATCTGCTGTTAACGCTTTAATTATAGGGATGGCTGACTAAGACACACATtctatgttcagactgcaggcaaacTGGATTTTTGAGATCTGattcacacttttatttgcaaGTTATCAGGTCAGATTTGTGTGTCAGGATGTCACAAACGGATCTGCATGGGTTTCTGTTGTAACGAGGGAGGTGTCCGTAACTTATACTAACCTTTGGAACTTTTCTTGGACCTCCCGCACTTTTGTCACTCTAAATTTGATATAATGGATAACCAGAAATCAATCtgaatacaatctagatatgccaaaagtcagaCTTGGACtagcagtctgaacacagccacAGACATGCATGCTGCTTTGATTAACCAGACACGGGTTAAAACATGTTGTAAGATCTTGTCTAACTAGCAGATAAAATGCTACTACTTAGAAACTACCAGCTGTGCCAGTTGCCCTCCTTTGGGGATTTAGTAATAAGACCGTATGGTGCGCTGCTTTTGGCTCTGGTTCAACAGGGAGGAAAGGGAAGGAGCTTTTTGCCTCTATAAATCACCATGGGCACAAGCGCCAGAATACTTGACCTACAAGCAGTTTCTCTAGCATTGCTGACAGCAGCTCCAATTACAGTAGCCTGGCAGGctagagagcagagcagaggagAGGGAGTGAGCCAGGTGTTGTAAGCGCATCTTGAAGTGATTTATTACAGCGTTCTTCACCCTTTgtatttgtggattttttttttttttttttttttttttttttttggtgtgccCATGTGTGCTCGTATGTGCCCTAGTGAAGTATAACGTTACTGCTATGAGATTTTTCGACCCTGGATGAGAAGTGGTGGAGAAATTGATGCGTCTCACTGTAGGACACATTTAGATCCCATTACAACATCATCAAATGAATAATAGAGAgatatttgctttttaaaaatcagggttagaTTTGACAGTTTTAATAGATATTTGATGATCTAAATGAGCACAATGTTTAGGTCATTCTGGGCTGTTGCCATAgaaataccatttttttttaaactgcagttttaaccttaaacaaatacatttttcaagttCTAATATGAAGGGTTGAAAAtaagtttgtttaacacatctTTATCTTTACATTCTAAAGTCTAACTTTATAAGAAACCTGGAATTTGATTTTCACATACTGGGAAAGCTTCATTTGCCTCAATTTCTAATGGTATATAGAACCATCTACAGTATATTTCCCACCAATGTGAAGGACCTGTTAATTACCTAAATTGTTCTGCAGCGTGTGATGTTTGTATATAGAACCACTGCCTTTACTAAAGAACCATTGAACAACCCTTGTTTTAAAGAGTGTAGTTCTCCACggatgttttattgtgtttcagGGTTTTATTCCAACAGGTAaagacattttaatttttttttcattgttctgGAAAGGTTTAAAGGCTATTTAACAGCATCATTAGTCCCACATTGCCACCTTCTGGAGGTCTTCAGGAAGAGCTTCTTAAACACTACATAGCATAGAAGTATTtcagttgtttgttttttaaaaagtattacttaaataaaatgttgtgaTTCATGAGATTATATGCTTTATGTTCACCAGCAGTAACATAAACAATACATTGCTCAATTATTTTACATAACTACATCAGAGAAATGCACTGGAACAGTCCATCCCCTGCATATGTGccaattgtttatttttgttttccattCGGAACTTGTGCAAATAATGTTTGGTCGCTGTATTGAAACCCATAAAGGTTTATTTATACTA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14825 TMED5, ERP2, ERP4; p24 family protein gamma-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43429 lncRNA downstream 17864 71161302 ~ 71163064 (-) True G32346
TU43427 lncRNA downstream 87715 71090501 ~ 71093213 (-) True G32344
TU43404 lncRNA downstream 151642 71026503 ~ 71029286 (-) True G32326
TU43407 lncRNA downstream 152047 71025689 ~ 71028881 (-) False G32327
TU43405 lncRNA downstream 153274 71025689 ~ 71027654 (-) True G32327
TU43471 lncRNA upstream 64365 71254340 ~ 71257890 (-) True G32375
TU43470 lncRNA upstream 64522 71254497 ~ 71257919 (-) False G32375
TU43484 lncRNA upstream 71020 71260995 ~ 71289235 (-) True G32386
TU43489 lncRNA upstream 89645 71279620 ~ 71280405 (-) True G32389
TU43618 lncRNA upstream 780529 71970504 ~ 71982053 (-) False G32492
XM_007239521.3 mRNA downstream 3722 71174229 ~ 71177206 (-) True pigc
XM_007242523.3 mRNA downstream 75109 71099602 ~ 71105819 (-) True ccnk
XM_007241836.3 mRNA downstream 93971 71077110 ~ 71086957 (-) False LOC103038639
XM_007241834.3 mRNA downstream 93971 71077110 ~ 71086957 (-) True LOC103038639
XM_007241837.3 mRNA downstream 119968 71054445 ~ 71060960 (-) True snw1
XM_007260659.3 mRNA upstream 823280 72013255 ~ 72031640 (-) True prkaa2
XM_007260662.3 mRNA upstream 1208816 72398791 ~ 72402415 (-) True bloc1s2
XM_007260664.3 mRNA upstream 1308747 72498722 ~ 72518295 (-) True pcsk9
XM_022666060.1 mRNA upstream 1332690 72522665 ~ 72527600 (-) True bsnd
XM_015608682.2 mRNA upstream 1332690 72522665 ~ 72527444 (-) False bsnd
TU43449 other downstream 38590 71138486 ~ 71142338 (-) True G32364
trnat-ugu_81 other downstream 84225 71096631 ~ 71096703 (-) True trnat-ugu_81
TU43425 other downstream 91467 71088875 ~ 71089461 (-) True G32343
XR_002649364.1 other downstream 2019024 69145308 ~ 69161904 (-) True sec63
TU42561 other downstream 2351908 68827985 ~ 68829020 (-) False fam84a
TU43617 other upstream 789085 71979060 ~ 71982053 (-) True G32492
TU43689 other upstream 1051555 72241530 ~ 72242270 (-) True G32557
TU43757 other upstream 1337808 72527783 ~ 72542447 (-) True G32611
TU43886 other upstream 1507698 72697673 ~ 72698010 (-) True G32714
TU44174 other upstream 2197887 73387862 ~ 73388612 (-) True G32914

Expression Profile