RNA id: XM_007240731.2


Basic Information

Item Value
RNA id XM_007240731.2
length 1217
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC103045211
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67852557 ~ 67853773 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttgCCATATTTTACCAAATGTAGTGTGCTTCCATCAAATTAAGTTAAgttttggatttttatttaatttaaatgtatgtcaATTGAAATGACATAGGCTTACTTATtacttatataaaaatattcctCACAGGACACCGTACTTATTACTTAGAACCAGTCATCCTAGCAACCAGCGGTAACCAAGGGAGGGCGGGGCAGGCGGCGTTCCGAACGTGACGTCATCGCTCAAGTCTGCGAGTGAGTATAAAAGCGCTGACATCACAAACAGAACGTCATTCGCGCAATTGAAGATGTTTCGCTTGAAAGATACTACAGTGCCTATGCCAAAGGAGGACTTGTGGACTGGAACCGCTCGAATACTGGACAAACAGCGAGAGATAAAGTACATACATGCTGTTCTCAGAAAACACAAAGAGAGACAAATTGCTGCCCTGCTGACCAAGAAGGAGAAACTGCAGAAGCGAGTCAGCCAGGACCGAATCTACTGGAGCTTATTAGACAGTGTCTTGAAGTCCTCAGATGAGTTTGAGGACTTTGGAAAGCTCATTGGCCGCTTCAAGACACTGGTGCGTACGAAGGAGCAGCTGCTGAAGAGGCAGAGCACGatggagagcgagagagagagggaagccGTGCAGCTGAGGCAATATGTCAGCGAGAGGAGATCATTGTTACAGCATTATGAGAACACACTCTCACAGCTACAGACTGAACTGAACACCACCCGTTCTCAGGCTCGCAGATTGGAATCCACTGAGAAGCACATCCAGAAAacagatgccaaaaggacattACTTTTGGGCCGGATACACGTTGCGACACGGAATCTTTATCAAATGACTGGCGGAGTCACAAGTGGTGCTGAAGGGTTTAATGTTAAGGACACGCTGGATCAACTGGACAGGATACAGCAGAACATCCAGATGTGGACTGAAATTCTTCAGGATCTGGGGTCAGACAAAGGATCTATCAAAGCCAGCAACCACACGTGAAACCCCACACAAATTCACTAAACTGTACAGACCGAGCGGATTTTACCGGACAGTATTTGAAACAGGAGGCTCTCGCGCCGCCGCAGCGTCTCTAATCACCGGCCGCAGCTCATCAATCACCTAATCAATATCAATACACGCCTTCCTGCCGCGCATGCGCACCAGCCAACCAGCGCCTACTGGCagaaaatagaaacaaaataaaagactgcatttattcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42333 lncRNA downstream 8034 67843284 ~ 67844523 (-) True G31523
TU42363 lncRNA downstream 17509 67833423 ~ 67835048 (-) True G31546
XR_002649744.1 lncRNA downstream 166245 67685366 ~ 67686312 (-) True LOC111191948
TU42282 lncRNA downstream 193472 67657575 ~ 67659085 (-) True G31482
TU42279 lncRNA downstream 197940 67654150 ~ 67654617 (-) True G31480
TU42348 lncRNA upstream 1874 67855647 ~ 67885433 (-) False arpc5
TU42386 lncRNA upstream 61686 67915459 ~ 67920354 (-) True G31564
TU42398 lncRNA upstream 78955 67932728 ~ 67940712 (-) False LOC103046133
TU42400 lncRNA upstream 88724 67942497 ~ 67942707 (-) True G31572
TU42401 lncRNA upstream 89136 67942909 ~ 67943153 (-) True G31573
XM_007238290.3 mRNA downstream 246381 67585111 ~ 67606176 (-) True LOC103030302
XM_015607348.2 mRNA downstream 372770 67434969 ~ 67479787 (-) False nek1
XM_015607349.2 mRNA downstream 372770 67434969 ~ 67479787 (-) False nek1
XM_007255233.3 mRNA downstream 372770 67434969 ~ 67479787 (-) True nek1
XM_007255229.3 mRNA downstream 436665 67352889 ~ 67415892 (-) False sh3rf1
XM_007240732.3 mRNA upstream 1833 67855606 ~ 67862313 (-) False arpc5
XM_007240734.3 mRNA upstream 78787 67932560 ~ 67940713 (-) True LOC103046133
XM_007240735.3 mRNA upstream 114363 67968136 ~ 67972358 (-) True LOC103046427
XM_007240737.3 mRNA upstream 119452 67973225 ~ 67981928 (-) True LOC103046744
XM_007233633.3 mRNA upstream 370051 68223824 ~ 68229829 (-) True mycn
trnat-agu_1 other downstream 193906 67658579 ~ 67658651 (-) True trnat-agu_1
trnai-aau_2 other downstream 194304 67658181 ~ 67658253 (-) True trnai-aau_2
trnai-aau_1 other downstream 194859 67657626 ~ 67657698 (-) True trnai-aau_1
trnai-aau other downstream 195020 67657465 ~ 67657537 (-) True trnai-aau
TU42226 other downstream 324220 67503749 ~ 67528337 (-) True G31437
TU42346 other upstream 1874 67855647 ~ 67862272 (-) True arpc5
TU42459 other upstream 237447 68091220 ~ 68091581 (-) True G31622
TU42561 other upstream 974212 68827985 ~ 68829020 (-) False fam84a
XR_002649364.1 other upstream 1291535 69145308 ~ 69161904 (-) True sec63
TU43425 other upstream 3235102 71088875 ~ 71089461 (-) True G32343

Expression Profile