RNA id: XM_007245217.2


Basic Information

Item Value
RNA id XM_007245217.2
length 2908
RNA type mRNA
GC content 0.42
exon number 3
gene id cryab
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 1437806 ~ 1442109 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGGGATGAGACAGCTTGCAGAGGAGAGTGGGAGGGACGCAACGAAAGGGGGGCCATCAAACAGTTTACATCATTGTTCCAGAAAGATCCGCAGCTGGCTGGGCCTGGCTCTGTGACCGCTACTGGTGGTGTATATAAGTGGGCAGGCTGGGCAGACAACAGGTTTTTCTCCAGGAGGACAACGCTAGCCTTAGGTCAGAAGACGAAATGGACGTCGCCATCCAGCATCCCTGGTTCCGCCGCTCTTTCTGGCCATCCTTCTTCCCCAGCCGGATCTTCGACCAGCATTTCGGGGAGCATATCCCAGAGAGTGAGATGTTGACCCCCTACCCCTCATTGTATTACCCACGACCCTCTTTCTTCCGCTTACCTAGTTGGGTGGAAAGTGGGCTATCAGAGATGAAAATGGAAAAGGACCGTTTTACCATCAATTTGGATGTAAAACACTTTGCACCTGAGGAATTGGCAGTTAAGGTCAACGGCGGTTACATTGAGGTTCATGCTAAACACGAGGATCGTCAgGATGACCATGGGTTTGTCTCACGAGAGTTCCTACGAAAATACCGGCTCCCTCTCGGGGTCGACCCAGCCAGTATCAcctcttcactctcttcagATGGCATCCTCATGGTTGCAGCCCCTCGCAAGCTCTCCGATGAGCCTGAGCGCTCCATTCCCATCACTCGAGAAGAAAAGCCTGCTATCTCTGGCTCACAGAAAAAGTAAAGCTGCTAGATACTTGCTCCTTTCTGTCTCCCCTCCGCTGTGGTCCCCCTGCACTTATCTTCCACCTTCACATCCCAAGTCAAGCTTTGAGGAAAAGCCAGTGCTAGCATTGAGCTGAACCTTCTAGAGGCTTGGCCTTTCCAGAGGCTAGTCCTAATCAAAGGGCTCATTTCTGAGCTAGCTAGTAACTGTTCTAGCACATGTTTCTGTGCTAAATAGTGATCACTGAATTGTCTAATTCGGTTGGCACATCAAAACCGTGTCCTCAGAGATATGTACATCATTACACCACAGGAGTATTGTTTGTGCCGCTCAGCCGCTGGACGCAAAACACATTTTGCTTCAGCAATCCCAACCACAACCACGCCAAACAAAAGTGCTCTTTGTCTTTTACAGCCAGTCAGTGGCAAACAATGGTGGCACGGAGTAGAGAATGGTGAGGGATTGAGTGTAGGAAGACTGGATGTTCGAGCATTTTTGTGATCAAGCGGTGAAAAGAAATTAGCCTACGAGGAAGAACACTGTGAGGGAATTTTCATTGAGgtaaaaaatgttgtttgtttggtttcaaACGTTTCATGTGAAGTGGGAGGTGGTGTGCCGAGAAAAAATGAGTATGTTTCGTAATTTGAAAAAAACTTCCTTTTCATGATGGACTTGGGACCAGATGATACATGAAGATCAAGTGCAGGTAGCAACAAGGTGAGGAGAAATGTTATAGAAAGAAAGTGACCTCTTTTTTTTGGTAGTTTCTGTGGGATTCTGTAGACATGACTTTTCATTGGTTTGGATGGATTGATATATGGCGTCTGGAAACATCTTGTTATAAATGGAGCAGTGAATCAAATATGATGAGGTTTGGTTTGATATTGAAAAGCTGCGTTCCAAAGTCTAGATTGGCTCCATTTCTCAGCCACTTTGTCATAAAAGCCTGTCATAAGTGAAGGGCTCTTATTATACAGCCTACAGCTGAGAAATGCAGTCAGGGTTTGGAGCAATAGACCTTGGAGTgcagatagaaaaaaaatgggGATGTGGGAATTTGGTGGAAGAGATTATAATTAGTTAAAAATTATTCAGAGGTGTTTGGATTTCCTAAAGAATGTGTCTGCTGactttttcacatattttaatgtgtttcaaTCAAGTATTTGCTCATAttctacataaaatatataatactacattttgcaaacaataaaaaagagattGGAGGTTGTTTACTATCTATAATAGCCATCTATTTTACAGCAATGCTCCCAAAAGcagacatcccacctctccCTTACCTCCCGGGATTCTCACACATACAAGGCATTAACTTGTTGAAATTAGTTTTTACAGGGCAGATTGTCTGCAAAAATATTATTGAGAAAGCTGCTTCAATAAGAAATGATGTGATGTTGTAACAAGGCACACAACGTAATACACTTTTGGAAACACTTTCTTTGTGCAAAGGTAAATGTGGACCACAGTTATTATATCAACTAAAAGGCACAAGTGAGGGGGACACACAAGTAGCTGTTTCATGTGTTCTTGGTTAGGATTGGTCTTTTACATTGTCCTGGGGTTAaaactgcttttaaacattCTACAAGGTTCTTTAACTAATACCATAGAACAGTGATGTATAGTCTATTCCACTCTCAGATTTTCATTCTAACCAACCAGCAGCacaattaataaactcatgAGTTTTTTCAGGAACTGATAATGTGCTTCTGCTTGTCTGAAATGAAAACGAAAAAAGCCACACTTGCCTTTTTCAGATAAGGCTGGACACCACTCTCATAGAAGAACCCTTTTTTACTTCCCTAAAGAACCATATTTGTATAAGAGACCCTATAAACACGTAAATATCCTTTgctttaaaaggttctttaccaatataaaggttcttcacactcacatTTCTTCAACAAATATTCTTTGGGGAAACAAAAATGAGCTTGGCTCCAAGAacctttgtagcacctttatgtTTAAGAGTGTAAAATAAGAACAAACAGGTCTCAGATCAGTGTAAAAGGCTCAGTGTTCCAGTCTTCTGCTGTTTCTGTTCACTGCTTCAACATTCCTTGTGATTCATGGCACTAAAACAATGTGTAAACACCACTtctccatgtgtgtgtaatgatggtTATAAACATCCAATAAATTCTGTGATCATTCAAAGATTCA

Function

GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09542 CRYAB; crystallin, alpha B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21305 lncRNA upstream 16998 1415182 ~ 1420808 (+) True G15749
TU21302 lncRNA upstream 25237 1409933 ~ 1412569 (+) True G15748
TU21270 lncRNA upstream 732004 686073 ~ 705802 (+) True G15724
XR_002651092.1 lncRNA upstream 822567 613037 ~ 615239 (+) True LOC111194479
XR_002651095.1 lncRNA upstream 840076 593655 ~ 597730 (+) True LOC111194483
TU21340 lncRNA downstream 12218 1454327 ~ 1457428 (+) True G15771
TU21393 lncRNA downstream 85946 1528055 ~ 1529400 (+) False fdxacb1
TU21400 lncRNA downstream 139404 1581513 ~ 1581946 (+) True G15813
TU21406 lncRNA downstream 144669 1586778 ~ 1636251 (+) True G15818
TU21420 lncRNA downstream 181817 1623926 ~ 1624377 (+) True G15831
XM_022678737.1 mRNA upstream 97006 1322522 ~ 1340800 (+) True LOC103025578
XM_022678744.1 mRNA upstream 97006 1322522 ~ 1340800 (+) False LOC103025578
XM_022667504.1 mRNA upstream 828377 600428 ~ 609429 (+) True LOC111191737
XM_022678694.1 mRNA upstream 879404 551043 ~ 558402 (+) True LOC103023152
XM_022678704.1 mRNA upstream 913668 509572 ~ 524138 (+) True LOC103028849
XM_007245220.3 mRNA downstream 15361 1457470 ~ 1469889 (+) True LOC103029064
XM_007245222.3 mRNA downstream 15361 1457470 ~ 1469889 (+) False LOC103029064
XM_007245225.3 mRNA downstream 55599 1497708 ~ 1500545 (+) True ufc1
XM_007245230.3 mRNA downstream 74388 1516497 ~ 1529417 (+) True fdxacb1
XM_007245229.3 mRNA downstream 75077 1517186 ~ 1529417 (+) False fdxacb1
XR_002651100.1 other upstream 105015 1322516 ~ 1332791 (+) False LOC103025578
XR_002651098.1 other upstream 105525 1322516 ~ 1332281 (+) False LOC103025578
XR_002651096.1 other upstream 844173 592228 ~ 593633 (+) True LOC111194487
TU21431 other downstream 239050 1681159 ~ 1682022 (+) True G15839
TU22663 other downstream 4730647 6172756 ~ 6177884 (+) False LOC103025913
TU22722 other downstream 5090287 6532396 ~ 6532868 (+) True G16820
trnat-ugu other downstream 5208596 6650705 ~ 6650777 (+) True trnat-ugu
trnat-ugu_1 other downstream 5209871 6651980 ~ 6652052 (+) True trnat-ugu_1

Expression Profile