RNA id: XM_007245234.2


Basic Information

Item Value
RNA id XM_007245234.2
length 3607
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC103032850
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 1559849 ~ 1579498 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGGAAACCCCGCAGCAGCAACAGCCGGTGACAAGATGGCGGGAGCCGACGGCGACGATTCTCTCTATCCCATTGCGGTGCTTATTGACGAATTAAGGAATGAAGACGTTCAGTTGCGGCTGAACAGCATCAAGAAACTCTCCACTATTGCTCTGGCATTAGGAGTGGAAAGAACACGCACTGAGCTTCTCCCTTTCTTGACAGATACCATCTACGATGAAGATGAAGTGCTTCTCGCCCTTGCTGAACAGCTGGGTAACTTCACCATGCTGGTTGGCGGCCCCGAGTATGTCCATTGCCTCCTTCCACCCTTGGAGAGCCTGGCCACAGTGGAGGAGACAGTGGTGCGAGACAAAGCAGTGGAATCCCTACGCAAGATCTCCCATGAGCACTCACCTGTAGACCTGGAGGTGCATTTTGAGCCACTGGTAAAGCGTCTGGCCAGTGGCGACTGGTTCACCTCCCGCACCTCAGCCTGTGGACTGTTTAGCGTCTGTTATCCACGGGTCTCCAGCACTGTCAAAGCTGAGATTCGCCAGCATTTCCGTAACCTGTGCTCTGATGATACTCCTATGGTACGTCGTGCTGCTGCTTCCAAGCTGGGAGAGTTTGCGAAAGTCCTGGAGTTGGAATACGTCAAAAGTgacattatctctctctttactgcGCTGGCCTCtgatgagcagGACTCTGTACGTCTTTTGGCTGTGGAGGCATGTGTGAGCATCGCTACACTGCTGCCTCAGGAGGACCTGGAGACTCTGGTCATGCCAACTCTCCGCCAGGCAGCTGAGGATAAATCCTGGAGGGTGCGCTACATGGTGGCTGACAAGTTCTCTGAGttacAAAAGGCAGTTGGTCCAGAAATCACGAAGAATGACCTTGTTCCAGCCTTCCAGAATCTTCTCAAAGACTGCGAGGCTGAGGTTCGGGCAGCAGCTGCTAATAAAGTCAAAGAATTCTGTGAGAATTTACCGGAAGATAGCCGAGAGACAATCATCATGACTCACATTCTGCCCTGCGTCAAGGAATTGGTTTCCGACACGAATCAGCATGTCAAATCAGCACTGGCCTCTGTGATCATGGGTTTGTCGACCATTCTGGGCAAGGACAACACCATCGAGCACCTGCTGCCTCTCTTCTTGGCCCAGCTCAAGGATGAGTGTCCAGAGGTGCGCCTGAACATTATTTCTAACTTGGACTGTGTGAACGAAGTCATTGGAATCCGCCAACTGTCCCAGTCTCTGCTCCCAGCTATTGTGGAGCTGGCAGAAGATGCAAAGTGGAGAGTGCGGCTGGCCATCATAGAGTACATGCCACTGCTTGCAGGCCAACTGGGAGTGGAGTTCTTTGATGAGAAGCTAAATTCCCTGTGCATGGCCTGGCTTGTTGATCACGTGTACGCCATCAGAGAGGCAGCCACGTGTAACCTGACGAAGCTGGTAGAGAAGTTTGGAGCAGAATGGGCTCAGAACACCATTGTTCCCAAAGTGCTGGGCATGGCCAACGACCCAAACTACCTGCATCGGATGACCACTCTGTTTTGCATCAATGCTCTGTCAGAAGCATGCGGTCAGGAGATCACCACTAAACACATGCTTCCTGTCGTCCTGAAGATGTCCAATGACCAAGTGGCCAATGTGCGCTTCAACGTGGCCAAGTCTCTGCAAAAGATTGGCCCTGTTCTAGACAGCAACTGTCTGCAGGCTGAGGTGAAACCAGTACTGGAGAAGCTAGCTGCAGATCAAGATATAGACGTCAAATACTTTGCCCAGGAGGCCGTAAGTGTTCTTGCCTTGGCCTAGTGGAGCTGCTGATGAACTCCTTCCCCATGTCAGGCTGACCTGCACATACTGATCATCATCCAGGATCATTCATTGGACTGTTATTAGAGAGGAAACGAGTTCAGCTTGTTTGTCTCGTTTATAAGTGTCAGAGAGCAGCGTCTCTGCTGTTGCAGTATTTGGTTTGAGTCTGTCAGTTTatctgtttcttcttcttcttcttgctttcttttgttctttctatctcttactctactctttctctctcagcctTGAATGATCCTAAGCACCTCTCCCAGTCTCACCCTTCATTCTAACTACAGTTCATTAGgctgacacacaaacacacatcttTCCCTGCCCccctcttcacacacacacagtagtatGTTTATCACATTGTATTCACTCACACCTCTTGCTACCCCTGGCTCAGTCCCCTCAGTGGGCAGCACTTTTAAGTGTAGTCTTAGTATTTAATgaactgctgagataaatactTGCAAGAATACAAACTCTATATCTATTAGGGGGTGGTGATGTTGAATAAGATGataaggaggaagaggaggaggatgattgTGATCTCAAGGCCCCAGTTAACTGCTAACTGTATCCGCTCTAGTTTCTGTGTGCTAAGAACAGAAGCATATGAGCAGTTAATACTGATTCAGAGCTTGCATGGCTTGCTTCGAGTCCTGCGCTCCCTGCCCAACCCTCTGCATGCATGTGGATGTCTGGACTGATCACAGCTCAAAACTGACAAAAGAACTGCCGCTGTTAGCACTTAGCATCAAGCCTGTGCATTCCATCCGTTGTCTTATATGGCTGTGAATATATGTTCAAGCCCAGGTTCTTCAAGACGTTGGCTGCAGTATTTCCACATTgtgctgttttgctgtttctaACCCAGCTAGCTCTCTGTTAGTACTCCAAATTGAATGGTTATGATCGAAAAGGGACCATAATGAACTATGCCTTGTCCTATTAAGAGTCATAATCCTGAGGAAGCTTTTGCGgctcctttttttttgtgcttttcacTGCATGGTACCTACATTACTCAACTCTGTACCAGGTGATGTTCCCAAAACACTGTCTCTACTATTGTCTTTAAAgtaaagacacagaaacagttCAGAGTGCTCCTGAAGAGATTGTGTTCCAGATTTTTGGAGATTGTGGCTTTTTGCGTCACAAAAAGGTTGCTCTGCAAAGTTCACGGGTCACGTTTTAGTCTAGACTTGTTTGGAACCATGAGCGAACAGGTAAAGTGTATGTACCCAGTACCCATGTACTGAGTTTGCCTGAAAGCAAAGCAAAAGAGCTGTATAGAGTTGAGTCGGTTAGTGTCGGTACCATGCAGTGTGAATGCACCATTTCTCTGCCAATTCTTGGCCATCCTGTAATCAGCCATGCTGCACATTAATGGATATTTTATTTTCCCTTTTAATTATTCTGTCTTGTGttcatatttgtttgttttattttgaacCAGATCATCTGTAACTGCTCTTAAACTTCTGCATGTTCAAATGTGAACTCCACTGCTGTAGGCAAAGCCTCATTAGCAAGAGAACAGACAGTTATGGGTCAGTTAATTCACTTCCAGGCAGCACGTTTTCCCCGTTATTAACATGTTAGCTTTGCCGGTGATGCCTACTTCAACTTCTTTCcccacagctttaaaaaaaacagaaacccaGTCTTGTTTTTGTTGTCTTGATCGTTGTCAGAATGTGCTTTTTGGTTTTATATGAACGTGAACCCACACTGCCCTCGGAACGGAGGGTAGAGTCAATAAAGAACCTGTTAGAAACACA

Function

GO: NA

KEGG:

id description
K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21393 lncRNA upstream 30449 1528055 ~ 1529400 (+) False fdxacb1
TU21340 lncRNA upstream 102421 1454327 ~ 1457428 (+) True G15771
TU21305 lncRNA upstream 139041 1415182 ~ 1420808 (+) True G15749
TU21302 lncRNA upstream 147280 1409933 ~ 1412569 (+) True G15748
TU21270 lncRNA upstream 854047 686073 ~ 705802 (+) True G15724
TU21400 lncRNA downstream 2015 1581513 ~ 1581946 (+) True G15813
TU21406 lncRNA downstream 7280 1586778 ~ 1636251 (+) True G15818
TU21420 lncRNA downstream 44428 1623926 ~ 1624377 (+) True G15831
TU21437 lncRNA downstream 150332 1729830 ~ 1730349 (+) True G15845
TU21511 lncRNA downstream 249286 1828784 ~ 1829016 (+) True G15890
XM_022667524.1 mRNA upstream 10092 1534029 ~ 1549757 (+) True alg9
XM_007245230.3 mRNA upstream 30432 1516497 ~ 1529417 (+) True fdxacb1
XM_007245229.3 mRNA upstream 30432 1517186 ~ 1529417 (+) False fdxacb1
XM_007245225.3 mRNA upstream 59304 1497708 ~ 1500545 (+) True ufc1
XM_007245220.3 mRNA upstream 89960 1457470 ~ 1469889 (+) True LOC103029064
XM_007245239.3 mRNA downstream 85098 1664596 ~ 1669346 (+) True btg4
XM_015604788.2 mRNA downstream 571132 2150630 ~ 2171204 (+) True nrgn
XM_007245243.3 mRNA downstream 607888 2187386 ~ 2203190 (+) True LOC103036563
XM_007245245.3 mRNA downstream 630147 2209645 ~ 2220704 (+) True ccdc15
XM_022678968.1 mRNA downstream 630151 2209649 ~ 2220704 (+) False ccdc15
XR_002651100.1 other upstream 227058 1322516 ~ 1332791 (+) False LOC103025578
XR_002651098.1 other upstream 227568 1322516 ~ 1332281 (+) False LOC103025578
XR_002651096.1 other upstream 966216 592228 ~ 593633 (+) True LOC111194487
TU21431 other downstream 101661 1681159 ~ 1682022 (+) True G15839
TU22663 other downstream 4593258 6172756 ~ 6177884 (+) False LOC103025913
TU22722 other downstream 4952898 6532396 ~ 6532868 (+) True G16820
trnat-ugu other downstream 5071207 6650705 ~ 6650777 (+) True trnat-ugu
trnat-ugu_1 other downstream 5072482 6651980 ~ 6652052 (+) True trnat-ugu_1

Expression Profile