RNA id: XM_022666125.1


Basic Information

Item Value
RNA id XM_022666125.1
length 3006
RNA type mRNA
GC content 0.37
exon number 5
gene id LOC103033168
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72604213 ~ 72610182 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTGCCCGGGTGTCCGCTGAGGGCGCGCTGATCCGGGAGCCGCTCTGCTGGAGAGGAAGCTGGAGGGTTAAAGGGTTTGGTTGTATCCGGGGTGACTGGTGGATTTGTTTGGATCTGTTGATTGTCCAACCTTTATCTACATTGCATAGCTCTTAGTTTTGAAGACTTGCACCTGCACACTGACCTTAGGAAGAAAAAACTTGGGTCAGAGGCCAGTTCTTCAAAGACTGAATGGTGTGCCCTCAACATGTCCACTGACAGAGAGCCATGTGTTACTGCTAAACTCTTCCACCTCATCTTCCTTTCCACCTTTTGGGGCATGCAGATATGGGTCACGTTTATCTCTGGCTTTGTGATGGACAACCATCTGAACAGGCACACATATGGCTTTATTCAGAGTCGACTGTTCCCCTTCTACCTGCACATCGGCTCAGCATGTGCCTTCTTCAACCTTACCATTTTCGCCATGTACCACCCCAGTGACCTTCTCACTGACAAAGAGGCATTTCAGATCTTCATTTTCTTTGTATGTGTGACTGTGGCAGCAGTGAATGCCCAGTGGTTTGGCCAGTTGACCTCTGAGATCATGGCAGATATGCACATGATTGAACAGGCCTGCGGACTGGGCCAGGACATTGGGCTGTCATCCAACCGAGAGGCCTACTCCAAACTGTGTGACACAGACCCCAAGTACAAACGACTGAGCAGCCGGCTGTGGCTCTACCACCTGCTGTCTTCCCTATGTAACCTGTGCTGTATTGTGTGTAATGGCTACAGCCTTTACTACCTAGCAGAAAACCTCACTACACTGTGAAGTCTAGAGGTCATGAACTCACAATGCAAACCAATCCAAGGCTGTCAAGGTATACAACCTGGACAAACATTTAAGTACAAGCATTCTTAGGTACTGTCTCTGTGGCCTGCCTTGTCTGATTTTTGGTACTATTTTGTTGTTAATATTTCATGTTCCTTTTTAATACTTTGCTGCtgacgagaaaaaaaaaaaaacagatttaaagaaTGGAATAATGTtgttaatggattttttttctaaggaATTTCTTAATAAAATTTACACAAAATGTAAAGCAGTGTGCACTTAGTGCAAATAATTGCAGGATCAACAATATTTAGATAACATGGAGATGAATGGGACTGTATATAAAAAGctaattacttaaataatagAAAAGTATCCTGTTAAAACTGTAACATCATACATAGTTTACAGGTAAAGCAAATAGAACAGATGTTAAGATctactaaaaaagaaaaaaaaaatgaaaaggtttttttttctttgtttgattTATCCGTATATAGATTTGTAGTCTACCTGAATCTCATATTCAATCAACTTTTAATAGGCTATATGACAGAAATCATTATATACTAAAAATATGTTGACAATATGTATTTGTAGCAGTTTCACAACAACtagttgtttaaaaaatagacccaatattgtaaaaaagttAAGAGAAGTCCTAAcaaaaattctatttttaagCTTCAGAATTGTTTACCTTATGTCCTCCTAAAATGGAATGAATcacaaataagaaaaatactGCTAAATGTCACAACCTTTTCAAAGAACCTCTCCTTGTATAAAATGTCTCTGTAACAGTTATGGTTTATTATAGAACCAGAATTTAGAAGTTATCTATGGCATCGCTCTACAAACCATTTgtaccacattttttttaaaagcacactcttaaatatacacacagcaGTTTTATATAGGGTTTTACcaacagcacaaaaaaacattcaacaggattaactACACTCTCTTTGGAATGCAACTTGCAGTAAATCAGTATGCTGTACCTAatagcagtatttttttttgttacctaTAAACATTTACTTATTGACCTGTTGATACAGGAGTATGAGTTGAGGCAATGAAGGAAAGCTATCACCTGGAGCTGGTGTCTTAGGACTGAGGACAGTACAAAATCTTACTGCCATAAAGTGTGAATGCCCATGTAAGTGCTTTTTCCTCACTGAGACTTATTTGTTCTGAGGCTTTTGCTGAGGTTCAGAGCCCCTTGTGCATTGCTACATTCAAAACAGGATTTTTTGGTTGTAGTAGATTGTTCTAGCTGTGTTCGAGCACCTAAATCGAGTTGTACTGGTCATGCAGGCCTGACCGGCTAACCTGCAGTAGCTGATTTATGCACACGCACATCAGCAATGCAGTAATACACAGTACATGTTAAGGTTATTATATAGTCTCATTACTGATACAGGACTGCTTAATTCGTGtggaccgtttttttttttcagctgtaaAACGTACATGCTCTGATCTACAGTCATAAGCTGAAGTATGAGATCattaattttatattgtttgaAATGTAACTTAGGCTGTAGAACACCTCACTCTACAGTATGTATGTGACAATCTGACAAATCACTTTCATTACAGTTGAAATATTatgcaatgtaaaaaatgtttttacataaTGGTGTACTTACACAATGAGGCTGTTGAGGCTTTGAATGCATCCCATTTAGGGTTCTTGTATATAAAGTCAATGCATATGAGCCGGCAGCTAATTTAAAACTTACTTTAGTACTTTCATATAGTGTTTGATGTCAATAGAAGTGAATGAACGAGTATGTGCTTATGCCCAGTCTTTAATCATATTTAAACACTATTGATGACCAGTATGAGTTCGGTGCAGCAGAATTAGGCATTATTGATGCTGTGGGTATATGATTTTTATGGTGTTAAGTTGGGTTTGTATTGTCTGGAAAGGTGAATATTAgtactatatataaaaatgtgagtTAACGAGTTTCCAAATTTACCATCTTCAATTCTGATAATAAAGGTTGCACccatcacaatttttttttcaaataacacTAGGGGATGTTGAGCTTACATGTGTTCATTGTACTGGTTAGTTATTTATTCTAATAATGATTGTGCCTgtataactttttaataataaaacacattaaaataagaaGGCTGGTACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43787 lncRNA upstream 8556 72565009 ~ 72595678 (+) False G32630
TU43786 lncRNA upstream 8556 72586500 ~ 72595678 (+) True G32630
TU43723 lncRNA upstream 107174 72492109 ~ 72497060 (+) False usp24
TU43715 lncRNA upstream 240893 72362951 ~ 72363341 (+) True G32579
TU43702 lncRNA upstream 281228 72322661 ~ 72323006 (+) True G32570
TU43805 lncRNA downstream 16214 72626396 ~ 72626685 (+) True G32644
TU43885 lncRNA downstream 87267 72697449 ~ 72697765 (+) True G32713
TU43888 lncRNA downstream 91340 72701522 ~ 72701806 (+) True G32716
TU43921 lncRNA downstream 171641 72781823 ~ 72786363 (+) False sf3b6
TU43953 lncRNA downstream 231669 72841851 ~ 72842494 (+) False G32769
XM_007260666.3 mRNA upstream 36779 72559357 ~ 72567455 (+) True dhcr24
XM_022666012.1 mRNA upstream 107170 72403534 ~ 72497064 (+) True usp24
XM_007245314.3 mRNA downstream 17058 72627240 ~ 72636248 (+) False sirt5
XM_007245317.3 mRNA downstream 17293 72627475 ~ 72636248 (+) True sirt5
XM_022666138.1 mRNA downstream 44637 72654819 ~ 72679083 (+) True LOC111191362
XM_007245378.3 mRNA downstream 132836 72743018 ~ 72777057 (+) True LOC103023468
XM_007245380.3 mRNA downstream 171611 72781793 ~ 72786363 (+) True sf3b6
TU43802 other upstream 7297 72595906 ~ 72596937 (+) True G32641
TU43523 other upstream 623871 71964004 ~ 71980363 (+) False dab1
TU43257 other upstream 1434678 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 1463050 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 1528348 71073848 ~ 71075886 (+) True G32198
XR_002649475.1 other downstream 828874 73439056 ~ 73506987 (+) True LOC103030552
TU44367 other downstream 1380323 73990505 ~ 73992259 (+) False selp

Expression Profile