RNA id: XM_022686524.1


Basic Information

Item Value
RNA id XM_022686524.1
length 2191
RNA type mRNA
GC content 0.49
exon number 16
gene id elp3
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44219205 ~ 44254232 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGCCCATAGCGATCTGTGCCGTGGATAAAAAAACACCCAGGACTGAAACTGAGCCTCTGCAGCACTAACAGCCCGCGGAGCTAACgaGAAAGGAGAGTTTTATAGCTTTGCCGCTTTAGGAGCTGTCGTCGAGATGGGAAAGCCgaagaggaagagtGAGCTCAGCAGGGCTGAACTGATGATGATGACAATTGCAGATGTCATCAAACAGCTGGTTGAGGCTCATGAGCAAGGGAAAGATATTGACCTAAATAAacTGAAGACAAAAACCTCAGCAAAGTATGGCCTCTCTGCACAACCCCGCCTGGTGGACATTATTGCTGCAGTGCCGCCCCACTACCGACGGGCTCTTGTACCAAAACTAAAAGCTAAGCCCATCCGCACAGCCAGTGGAATTGCTGTCGTTGCTGTGATGTGCAAGCCCCATCGATGTCCACATATCAGTTTCACCGGCAACATTTGTGTGTACTGTCCAGGAGGTCCTGACTCTGATTTTGAATATTCTACACAGTCTTATACAGGCTATGAGCCTACATCTATGAGAGCTATCCGGGCCCGCTATGATCCATATCTGCAGACCAGACATAGAGTGGAACAGctgaaGCAGCTGGGCCACAGTGTGGATAAGGTGGAGTTCATTGTGATGGGTGGCACGTTCATGGCTCTGGCTGAGGACTACCGCGACTACTTCATCCGCAACCTCCACGACGCGCTGTCGGGACACACTTCCAACAACGTGGCAGAGGCCGTCAGGTACTCAGAGCGCAGTAATACAAAGTGTGTGGGGATCACCATTGAGACACGACCAGACTACTGTCTGAAGCGGCACCTCAGCGACATGCTGGCGTATGGCTGCACCAGGCTAGAGATCGGTGTACAGAGTGTTTATGAAGATGTGGCTCGTGACACAAACAGGGGGCACACAGTCAGAGCCGTATGTGAGTCATTTCATCTGGCTAAAGATGCTGGCTTTAAGGTGGTGGCCCACATGATGCCTGACCTGCCAAATGTGGGCATTGAGAGAGACGTTGAGCAGTTCATAGAGTTTTTTGAGAACCCAGCATTTCGGCCAGATGGACTGAAGCTCTACCCCACCCTGGTGATTCGGGGAACCGGCCTTTATGAATTATGGAAGACGGGACGCTATAAGAGCTACTCACCCAGCACCCTGGTTGATCTGGTGGCTCGTATTCTTGCATTGGTGCCACCCTGGACCAGAGTGTACCGTGTGCagagGGACATCCCGATGCCGCTGGTGAGCTCCGGTGTAGAACATGGGAACTTGCGAGAGCTGGCATTGGCTCGTATGAAGGACATGGGAACTGAGTGTAGAGATGTAAGGACCAGAGAGGTGGGCATCCAGGAGATCCATCATAAAGTGCGACCGTACCAGGTGGAGCTGATCCGCAGAGATTACGTGGCTAACGGTGGATGGGAAACTTTCCTTTCATATGAGGATCCTGAGCAGGACATTCTGATTGGTCTGCTGAGGCTCCGCCGCTGCTCACCGCAATCTTTCCGGCCTGAGCTAAAGGCTGGGGTATCGATTGTGCGTGAGCTGCACGTCTACGGCAGCGTTGTACCAGTCAGCAGTCGAGATCCCAGCAAGTTTCAGCACCAGGGCTTTGGGATGATGCTGATGGAGGAGGCAGAGAGAATAGCCAGAGATGAACACGGCTCAGGCAAACTGGCTGTTATCTCAGGTGTAGGAACTAGGAATTACTACAGGAAGATGGGTTACGAGCTGGAGGGGCCGTACATGGTGAAACGATTGGACTGAAAGCTTCACACAAAAGGACAAACAAGGACACGAGGATAATTCCACCAAGGTTTATATCATTACAGCTATGGGAAGCAACAGATTTAAAGAGACTGGcatgaaaaaatgtattttacagttcaGAAATGAAAGATTAAGATCAGGGCAGGGGCTTGGCTGAcactccaatttttttttttttattattaatttgaatTATAAGGATACAGAAACTTTTATACACATCgccaaaaataaagaaataggcAGGAGGGATCTGGGGTACTCCCTGCAGTTattgaattaaatatttatagtgtCAGTTTAAAGGAGAGAAGGACGTTATTTTATGTAAGCAGCATTTCAAATCCTTATTAATCCACCATGTTTTTCTGTCTACATCCTGAAAATGAATTGCAGTTCCACTGAGA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0007409 axonogenesis biological_process
GO:0008023 transcription elongation factor complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0008607 phosphorylase kinase regulator activity molecular_function
GO:0004402 histone acetyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35019 lncRNA upstream 16671 44107941 ~ 44202534 (+) False G26039
TU35012 lncRNA upstream 16671 44117024 ~ 44202534 (+) True G26039
TU34860 lncRNA upstream 294936 43921539 ~ 43924269 (+) True G25956
TU34829 lncRNA upstream 515508 43703183 ~ 43703697 (+) True G25934
TU34820 lncRNA upstream 545486 43666621 ~ 43673719 (+) True G25925
TU35026 lncRNA downstream 2306 44256473 ~ 44263202 (+) False G26043
TU35027 lncRNA downstream 2306 44256473 ~ 44261016 (+) True G26043
TU35086 lncRNA downstream 18127 44272294 ~ 44272504 (+) True G26088
TU35127 lncRNA downstream 65819 44319986 ~ 44323822 (+) True G26107
TU35145 lncRNA downstream 110425 44364592 ~ 44367931 (+) True G26121
XM_022686515.1 mRNA upstream 23323 44077827 ~ 44195882 (+) False LOC103028637
XM_022686507.1 mRNA upstream 23323 44089874 ~ 44195882 (+) False LOC103028637
XM_022686486.1 mRNA upstream 23323 44150192 ~ 44195882 (+) True LOC103028637
XM_022686496.1 mRNA upstream 23323 44150193 ~ 44195882 (+) False LOC103028637
XM_022686489.1 mRNA upstream 23323 44150193 ~ 44195882 (+) False LOC103028637
XM_007245347.3 mRNA downstream 26955 44281122 ~ 44297719 (+) True pnoc
XM_007245348.3 mRNA downstream 85079 44339246 ~ 44347656 (+) True LOC103041645
XM_007245350.3 mRNA downstream 103109 44357276 ~ 44359403 (+) True LOC103042260
XM_022686599.1 mRNA downstream 163271 44417438 ~ 44460259 (+) True cdc42bpb
XM_007256619.3 mRNA downstream 206518 44460685 ~ 44471931 (+) True vipas39
TU34777 other upstream 724890 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 794299 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 797159 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 855761 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 1702648 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 2274228 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 4024100 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 4026598 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 4301630 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 4301630 48555797 ~ 48641905 (+) False G26995

Expression Profile