RNA id: XM_007245345.3


Basic Information

Item Value
RNA id XM_007245345.3
length 3638
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC103040630
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44298947 ~ 44308698 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGGCTATGTCTGCAGTCGTGTGCTATTGTAGTGTATTTAACAGTGTATGTATCATCGTCTGATTTAGGGCTGCCTCAACACTCAGTCTTAGGCTAAAGCTCGTGTTCGTACACGTTGGTAAACCGGGGGTGTGTACGTGGGGGAGGTCGCCTCGACCAATCAGCGCACAGACCCCGCCCACTGTGGGTAGGTTGTTTACCGCTCGGTGGAAACGCCCATAGAGACAGCCCGAGGAAAACTGTGGAGCCGGAGAGTCCACTCACAACAGTAGACCGGCAAAGCTAGATATTCCAATTCCAGAAAGTAAATATCCAGCACGGGATTTTGTTTCATCTGCCTAAACGGCTCTGCTGCAGCGGAGCTGTAGACGCAGTTTGAACCAAATCGTGGGATGGAGTTTCACTCTCTGGAATTGGACTACCCGCCTCgacttaaaaacatattttgtagcATTTCTTCAAGCCAAAAACGATAAAATATGACTGAAATAATCAAAAACACGCAAAAAAGGAAGAATGTGTATCGTTTTTCTGATGGAAGTCCGACTTGACAGTCGGCGTGGGCATGACGACCCGGTGTTATGTCAACTTGTACTACCGAGCGATATGTGTTTATTAGCCGTTCTGCGCATGCGCGGtgccagatttttttgttttcttgtctttttttatgacaattatttttttctctgtgcgTTTTAAAAGCGTAACTTGCTGCAACTATCGGCCTGAGTGTTACAGAAGTGTAAACGGCGatgtaaatgttacatttaaacttccctttttaaaattcagttttaaaataCCTTTTGCGTCCCCTGATACAGTGATTTAGGCCCTTCAAATATTCTAGTTATGCTTCTGCTGAGAGCATGTTTAATATGACGCTTTGAACCTATACGGGTAACCTTAGTTAACTATGTTTTGTCCTGTTTTATTTAGGCAGCGTTTACACCGTGATAGCAGGTTTTGACGGGGTAGCACaaatcgacagaacaccggtatACTCCGCTACGCTGTTTAGTTGTATCCCGGATTTCAGTTCCCTGAGCCCGAGATACAGTACGTTAGAGGCTGTCAGTGAGGGGGTGTGTTGCCCTAAAAATAGTCTAGGCATGGTGCAGTGTGCGAGTGGGTAGTTGTTTTTTCTAGCTAATGCAGAGATCGAATTTGTACGGGTTTAATACAGtttttttgggGAGCCTGAGTCGACGGCGTGGTCCAGCACCACTGAAAGACTGAGGGTGAGGCACAAAACATGGCAGCTGTGAAGTCTCGGGCAGGACCAGGGGCCATGCAGTCCGCATCAGAGGGAGAAGAGGAAGGCTTGATCTATATGCAATGTTGTGGTCAGGAGGATGTGGATGCACAGAAACACCGCCAGCACCCCGTCTTCCAGTCACCGTCCGGTAGTGGGAGAGTGTGGCCCACTACTGCAGCCGTCCAGCAGTCAAAAACCTTCACTTTTCCACAGTCTTCCAGTGTAGACCTGCCCTACAGGTACAGGAGTCCTGAGTCGGTGGAAATGGATGAGATCATGGCTGCAATGGTTCTTACCAGTCTGTCCTGCAGTCCAGTAGTCCAAAGCCCCCCACAGAGAGATCCCCTGCCAGCTGCCCCAGGGGACATGGAATGTGGTGGAGGGGAGCTGTCTGACAGTGGCAGCAGCGGCTACTGGAGTTGGGACCATGGCAGCGTGAGCCCTGCTCCATCACCTTCTGTCACAGAGACAGACGGCAGTCTGGGCCAACCGGTAGATGAGGGGCTGCAAATGGAGCTGGAGCAGGGGGGGTGCGACGAGCCAGAGAGCAGGAGATGCAAGAGTTTGAGCAGGGGTGCATATCGGTGTTTGTGGCCTGGCTGTGGCAAAGTGCTGACATCACGGGTTGGGATGAAACGTCACATTCGAATTCTCCATCTGGGCAGTGGCTCAGAACAGTCCCACAGAGAGGAGGACTTTTATTACACTGAAGTTTCCTCAGAGGAGGAGCCAACTACTCCCTCTCCTGTTCCTTCATTTTTCAGTGGGCCCTGGTCGTCCTGTAGCTCCACCAACAGCCAGTCCACTCCTGGACCCCAAGAGGTCCTGCCTCCGTCCAGTGTTCTCAGTCAGTCTGCCCCCAGCAGCGTGTGGCAGATTCATACAGAACATCTCTACCAGGCCTGCACTCCCATTGAGGTCACCATGTTTCCTGGATCTTCTGCCTCCTGTGACCAGCCTCCACCTGCTGGTCTCCAGCCAAGACCTCAGATCACCACAACCCGTAGCCGTTCAGTCAGTGTGGGGGAGCAGTGGTTGCAGCGGAACAGCGCCCCCACCAGATCACAGACCATGAGTGCATCGCCCTCCAGAGGGCACTGTTCATTCCGGAAGGGCCGAGGCGAGGCCAAAAAGTGCCGCAAGGTGTACGGTGTGGAGCGCAGGGATCAGTGGTGCACTGCTTGTCGCTGGAAGAAAGCGTGTCAGCGTTTCCCTGactaaaagtgaaaaacaaaaaaacccaaCAGACTTTAGGAGGCGAGAAAGAATCAccatttttctttcctttcctccGACCACTTCTGGCACTGTAGAGGACGGCAAAACCCCCTCTTTTCACTTttgtacctgtttttttttgttgttttcttacAAGAATTGAAATTGTTTTTCGTTATCTTTCTTGCGAAGTGAGCGGTGGTGCTAGATGTTGAGACTGTGAGTGTGGTGGGCTTGGGTCCTGATTCCTCAGTTTCTTTTTCGTTTCATGATACAGAAAGGCCCCGGTCACCCTGTAATAGAAAAATTGTGGTTCTCTCCCCTGGTCCTGCACTTCATCCCCCCTCCTGAGGTTATTTAAGTGATTGTTGGTCTTGGTATATTGTGGACATCTGaaagtttttattgttttttcttcatttgctgttttttagccTGGATGCTGTAGTAGCATAACGTCATGTATTGTCTTTATTTTCTACGTATCTACTCAGATTTTTGGaatttttttatacacatttatttttctgctttGAATTAATGCCCACGTCAGCGCTTCCTAATCAAGCGAAACTGCCATAGTGAGCTATAGTGAGGTTGAGTGAAGGAGCGACTGGTGTCGAGGATCAGAGAGTGAGATAATtgtaagaaagagagattaAGTGCAGCTATAATCTATGATTGAATACCAAAGTGCTTTTGCAATGGCGATTCAAAGGGAGTGTGATTAGGTGCTGCCCTGAAACCAACTTGGGCTTGTTCCTTTTGTAAGTCCCTTTTCATCCTCCTAAACAGTATTATGATCTTATTTGTGTATTGGATCAAATATTTGGGAACATTTCAAGTTCTTACAGCACACTgttgacaataaaaaaagacatggtTAAAGATGACTACAAACGTACATTATAAaatatgcaaaactgagaagcTGATCGTTGCATGACAAATCACAAGAGAAATAGTAAACTATTTTATTGGTATTTGTGTGCATTTTATGTACAAGTTGGATGGTCTAAAAGAAAAGTACTCTGGAAACAAAAACTGCAATATGTGTTTGAACTGTGTATCATTCACAAAGCCAAACtgttatgtgtttttaaatatacaccATTCACAAAGCCAAAATGACGTATAAATGAAGAATACTGCAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35082 lncRNA downstream 74674 44221013 ~ 44224273 (-) True G26084
TU35079 lncRNA downstream 100469 44195249 ~ 44198478 (-) True G26083
TU34996 lncRNA downstream 242648 44054940 ~ 44056299 (-) True G26038
TU34983 lncRNA downstream 261110 44037302 ~ 44037837 (-) True G26032
TU34982 lncRNA downstream 263190 44035527 ~ 44035757 (-) True G26031
TU35193 lncRNA upstream 69057 44377323 ~ 44377527 (-) True G26154
TU35199 lncRNA upstream 133395 44441661 ~ 44444962 (-) True G26158
XR_002652393.1 lncRNA upstream 305944 44614210 ~ 44615581 (-) True LOC111197214
TU35293 lncRNA upstream 374922 44683188 ~ 44688822 (-) True G26238
TU35295 lncRNA upstream 390145 44698411 ~ 44698915 (-) True G26240
XM_015604837.2 mRNA downstream 35754 44256451 ~ 44263193 (-) False LOC103039281
XM_022686536.1 mRNA downstream 37987 44256451 ~ 44260960 (-) True LOC103039281
XM_015604841.2 mRNA downstream 79942 44202119 ~ 44219005 (-) True slc25a24
XM_022686450.1 mRNA downstream 317583 43946979 ~ 43981364 (-) True kifap3
XM_007245330.3 mRNA downstream 399187 43890629 ~ 43899760 (-) True cbr4
XM_007245489.3 mRNA upstream 2988 44311254 ~ 44317837 (-) True LOC103028959
XM_007245349.3 mRNA upstream 13437 44321703 ~ 44324457 (-) False LOC103041948
XM_015604821.2 mRNA upstream 13437 44321703 ~ 44324457 (-) True LOC103041948
XM_007245351.3 mRNA upstream 51833 44360099 ~ 44367840 (-) True LOC103042571
XM_022686636.1 mRNA upstream 217620 44525886 ~ 44575275 (-) False LOC103028241
TU34885 other downstream 620085 43675025 ~ 43678862 (-) True G25967
TU34644 other downstream 1187546 43098822 ~ 43111401 (-) True G25785
TU34500 other downstream 1580558 42717666 ~ 42718389 (-) True G25678
XR_002652157.1 other downstream 2433103 41857039 ~ 41865844 (-) False LOC111196508
TU35290 other upstream 461026 44769292 ~ 44799475 (-) False fkbp1b
TU35291 other upstream 461026 44769292 ~ 44799475 (-) False fkbp1b
TU35356 other upstream 558828 44867094 ~ 44870679 (-) False ubxn2a
TU35363 other upstream 574512 44882778 ~ 44885801 (-) True G26295
TU35470 other upstream 1127843 45436109 ~ 45437585 (-) True G26388

Expression Profile