RNA id: XM_007245348.3


Basic Information

Item Value
RNA id XM_007245348.3
length 3071
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC103041645
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44339246 ~ 44347656 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGCTGGCGGAAGCGCGACTCGCGCCCTCTCATTGGACAGTCCGccacagaagtataaatattataattagaCAGAGTTGCGCAGACCAATCACGATGCAGATCAGAGAGCGTCAGAGCTCCGAGTGGCGCGAAACGGGTGTCGGTGCAGAATAGCGGGGTGGTGGATCTGTCCGGCACGAGGTGTATCTGTTCCTCTGAGTCTTTATTCAGCTTTATAAACTCCACTTTACAATGGCCACCGACGTCGTGGACGACCATGAGATGAGGGAGGCTCAGAGAGAGTACCTGGACTTCCTCGACGATGATCAAGACCAAGGAATCTATCAGAGCAAAGTCCGGGACATGATCAGTGAGAATAAGTTCCGACTCATCGTCAACATCAACGATCTGCGGCGCCGCAATGAAGCTCGAGCTGCCAAactgatGAACAATGCTTTTGAAGAACTCCTGGCATTCCAGCGTGCTTTAAAAGATGTGGTGGCTTCTGTGGATGCCACCTACGCCAAGCAGTTTGAAGAGTTCTTCATCGGGCTGGAGGGCAGCTTTGGGAGCAAACATGTTAGCCCTCGCACTCTCACTTCTCGCCTGCTGGGAAGCATGGTGTGTGTGGAGGGCATTGTCACCAAATGCTCTCTGGTGCGTCCCAAAGTAGTGCGAAGTGTCCATTACTGCCCGGCCACTAAGAAGACTTTGGAGCGCAAATACACGGATATGACCTCACTGGATGCTTTCCCTTcaagtgccatctacccaaccaaGgatgAAGAGAACAACCCACTGGAGACAGAGTTCGGTCTGTCCATCTACAAAGACCACCAAACCATCACTGTGCAGGAGATGCCAGAGAAGGCTCCTGCTGGGCAGCTGCCTCGCTCAGTTGACATCATTCTGGACAATGATATGGTGGATGGGGCTAAGCCTGGTGACCGTGTGCAAGTCGTTGGGACCTATCGCTGCTTGCCTGGCAAGAAAGGTGGCTTTACCTCTGGCACATTCAGGACCATTATGATAGCCTGCCAGGTGAAGCAGATGAGTAAAGAGGTCACTCCATATTTCTCAGCTGATGATGTGGCAAAGATCAGGAACTTCAGCAAGTCCCGGACTAAGAATGTGTTTGACCAGTTGGCCCGTTCCTTGGCCCCCAGTATCCACGGGCATGAGTACATCAAGAAGGCCATCCTGTGTCTGCTGCTCGGTGGAGTGGAGAAGGTTCTAGAAAATGGATCACGCATCCGTGGAGACATTAACGTACTTCTTATAGGTGACCCATCAGTGGCCAAGTCTCAGCTTCTGCGCTACGTGCTGCACACGGCTCCTCGTGCCATCCCCACCACAGGCCGTGGATCGTCCGGAGTGGGTCTGACTGCAGCGGTCACTACTGACCAGGAGACAGGTGAGCGTCGCCTGGAGGCTGGTGCCATGGTGTTGGGAGATCGAGGTGTGGTTTGCATTGATGAATTTGACAAAATGTCTGACATGGACCGCACTGCCATTCACGAGGTTATGGAACAGGGGAGGGTTACCATCGCCAAGGCAGGCATTCATGCCCGTCTAAATGCCCGCTGCAGCGTCCTGGCAGCTGCCAATCCAGTCTATGGCAGGTATAACCAGTACAAGACCCCGATGGAAAACATTGGCCTGCAAGACTCCCTGCTGTCTCGATTTGACCTGCTCTTCATCATGCTGGACCAGATGGACCCTGAGCAGGACCGTGAGATCTCTGACCACGTGCTTCGCATGCACCGCTACCGGGACCCCCATGAGCAAGAAGGAGCAGCATTGGCTTTGGGTGGTACAGTAGATGTGTTGGCCACGGATGATCCAGACGCGGCTcaggaggaagagggagagcTGCAGGTGTATGAGAAACACAACCACCTTCTACATGGAAACAGGAGGCAGAGGGACCGAATTGTAAGCAAAGAGTTCATGAGGAAGTACATCCACGTTGCCAAGGCAATTTCTCCTGTACTGACCCAAGaagcagccaatcacatcgcAGAGGAGTACGCAAGACTGCGCAACCAGGACCAGCTTGGCTCAGACATTGCTCGgACATCACCTGTCACAGCCAGAACTCTGGAAACTTTGATTCGTCTGTCCACGGCTCACGCCAAGGCACGCATGAGCAAGTCTGTGGATCTTGTGGACACAGAGGTGGCAGTGGAGCTTGTTCAGTTCGCCTACTTCAAAAAGgttctggagaaggagagaaagcgTGCTAGAAAGGGAGATCAAGACTCGGCCTctgaggatgaggaggaagaggaggaaacCCAGGGCACCCCACGGCAGCAGAGAAAGAGGAGGCGCTGTTCAGCTGAGCGCAGACCATCACAGAGCAGTGAACCCTATGACCCATATGACTTTACCACAGAGGCAGACATACCTCAGATCCAATCTCCTGCTGCTGCAAGGCCTGCTGAGGAGCCTATGGAGACACCTGAACAGAACGGCCACACAGAATTATCAGCAGAAAGgctgaAGGAGTTCAAAGCTGCATTGCTGGAGGTCTTCCGCTCTGCACACGCTCAGTCTGTGGGCATGAACGCTCTGATGGAAGGCGTCAACAAAACCTGCTCCACTCCTTTCGATCAGGCCGAGGTTCGCACGGCTCTCGGACGCATGCAGGATGATAATCAAGTCATGGTAGCCGACGACATCATTTTCCTCATTTAAGGAGAAGGATCTGTGAAGGGAAACTGCAGAACACTGCAGAGTGTGAACTTTTGTCAGGGCCTGGCCTGCttcaaaaatgcattttacttACACATgcaagattttattttatcactCATAAATCAAACGCAGTTATTATATGCATGTTTTTGGTTCGTTGTTCAAAGGCAGGTGCTCACTCTGTGCACATTTAATGACTCATCTAATTCGCAGCTGCATTTCCTTGACTTACATACattcttttatttgctttttttattcagttttactgTATGTGGTTTTAGAATGAGGCGGATCTGTTTGTAAATACGGCCTGTTGTTGAAAAGAGGGTTAAATTTGGGTTTTGTTGCCCATTGAAAACTGAAGAATAAATAATGTATCAGATACAA

Function

GO:

id name namespace
GO:0032508 DNA duplex unwinding biological_process
GO:0006270 DNA replication initiation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K02541 MCM3; DNA replication licensing factor MCM3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35127 lncRNA upstream 15424 44319986 ~ 44323822 (+) True G26107
TU35086 lncRNA upstream 66742 44272294 ~ 44272504 (+) True G26088
TU35026 lncRNA upstream 76044 44256473 ~ 44263202 (+) False G26043
TU35027 lncRNA upstream 78230 44256473 ~ 44261016 (+) True G26043
TU35019 lncRNA upstream 136712 44107941 ~ 44202534 (+) False G26039
TU35145 lncRNA downstream 16936 44364592 ~ 44367931 (+) True G26121
TU35148 lncRNA downstream 29669 44377325 ~ 44377527 (+) True G26124
TU35252 lncRNA downstream 335532 44683188 ~ 44688403 (+) True G26202
TU35266 lncRNA downstream 388178 44735834 ~ 44736653 (+) True G26216
TU35267 lncRNA downstream 389511 44737167 ~ 44738115 (+) True G26217
XM_007245347.3 mRNA upstream 41527 44281122 ~ 44297719 (+) True pnoc
XM_007245341.3 mRNA upstream 85014 44220915 ~ 44254232 (+) True elp3
XM_022686524.1 mRNA upstream 85079 44219205 ~ 44254167 (+) False elp3
XM_022686496.1 mRNA upstream 143364 44150193 ~ 44195882 (+) False LOC103028637
XM_007245350.3 mRNA downstream 9620 44357276 ~ 44359403 (+) True LOC103042260
XM_022686599.1 mRNA downstream 69782 44417438 ~ 44460259 (+) True cdc42bpb
XM_007256619.3 mRNA downstream 113029 44460685 ~ 44471931 (+) True vipas39
XM_007256614.3 mRNA downstream 126492 44474148 ~ 44479904 (+) True LOC103046392
XM_022668053.1 mRNA downstream 325474 44673130 ~ 44693172 (+) True LOC111191907
TU34777 other upstream 844931 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 914340 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 917200 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 975802 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 1822689 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 2180739 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 3930611 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 3933109 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 4208141 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 4208141 48555797 ~ 48641905 (+) False G26995

Expression Profile