RNA id: XM_007245411.3


Basic Information

Item Value
RNA id XM_007245411.3
length 3617
RNA type mRNA
GC content 0.41
exon number 14
gene id LOC103032852
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73630251 ~ 73639424 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTCTGGTAGGTTgctgagtgagagagggaggaacgGGCGCTGCGCCGGGAcggtattatttttaatatatatatttttataagttGTATGAACTGAAGGCGAGGGCGCTGCGTATTAAACAACCGTGTTTCCGCACCCAGGTAAAAGATGCCGACTGTCAGGTTTCAGGCTGGAGATACTGTGATGGGCCGCTGGCCTGGCAGTAACCTTTATTACGAGGTTAAGGTTCTGAGTTTTGATGCCAAGACTCTTCTTTACACCGTCATCTACAAAGATGGCacagagctggagctgagggaTGCAGACATTAAGAGTCTAGCTGGATTTAAGCAAGGTCTTGCCCGCTCTCGTTCCCGCTCCCGTTCTCGCTCACCGGCCCGCACCCGCAGAAGTCGCTCTCGTTCACCAGCCAGGACTTCCCGCCGCTCTTCATCCCGCACCACAGAGGTGCGCAAGGAGAAACTTAAAGAGGTGCTAGAAGTTCGCCTTACTCCTGTGGCCATACCACTTGAAAACAATAGCAGCAATAAGCATGAAACAAAAGAGGAAAATGATGCAGCTAACAAAGTCAATGAGAAAACTGAGGAGGAATCGGAGAATCAAGTAGGTGGCCGCTACAACCTTCGCCGCAGGAAGGACCAGAGTGATGGTCGACCTGTAGAGCTGGTAAAGAAGATGGAGGAAATCTTGCCACATGCCATACCACAGGAAACCCGGAAGACTACAGAACTGGAGTTTGGAGGGAGGATTGGTGTGGTGTTCTGGCTGCTGTTTCTACCTGTGGTGGTTCTGGCCATGCTTATTCTCTGTGCCCAGACAGATGCTAGTCTCCTTAACTTTTCCCTCTCGCCTCCCCTGCTTGAGCCTCTTTGGGACTGGCAGGTTTTTGGCATTGTGGTCCTCTGGCTGCTCTTCCAGGCTGTTCTTTCTCTGCTCCCTATCGGCAAGGTTGTTGAGGGAATGCCTCTGAAGAATgggaaaacattaaaataccgGATTAATGGCTTCTCTGCACTGATCATCAGTGCATTGGCAGTTGGTGGTGCTGTGTACTACGAGGTGGATCTTAGCTACGTCCATGCTCATTTTCTGCAGTTCTACACCTCAGCTCTACTCCTCTCCATCCTTCTCAGCATCTACCTGTTTATCCGCTCCCGCTGTGCTTCTGAAGATGAACGTGCCCCCGCTGGAAATACAGgtcATGTGGTCTACGATTTTTTCATGGGACGTGAGCTGAACCCACGAATCAAAAGCTTTGATATCAAATTCTTCTGTGAGATGCGTCCAGGCCTGATTGGTTGGCTTGTGATCAACTTTGCCATGTTACTTGCTGAGATGAAACACAAGAATCTGGATACCCCCTCCCCAGCCATGCTCCTCGTCAATGGCTTCCAGCTGCTTTGGGTTGCAGATGGCCTTTGGCATGAGGAGAAACTTCTAACCATGATGGATATAGTGCATGATGGCTTTGGGTTCATGCTAGCATTCGGAGATCTGGCTTGGGTTCCTTTTACCTTCACTTGTCAGGCCTACTACCTTGTCAGCCACACCAGCGATCTGTCTGTGTTCTGGATTGTTGCCATCATAATAATGAATGTTGTTGGTTACTACATTTTCCGGCAAGCCAACTCTCAAAAATTTGCCTTCAGAAGAAATCCATCAGATCCTGCCTTGTCTTaccTAAAAACGATTCCTACTGCAACTGGAAAGAATCTCATCGTCTCTGGTCTGTGGGGTTTTGTCCGTCATCCGAATTACCTTGGCGACCTCATTATGGCTCTGGCCTGGTCCTTATCATGTGGTTTCAGTCatgtgattccatatttttacCTAATTTACTTGGTTGTTCTCCTTGTCCATCGTGATGCCCGAGACGAACACCAGTGTCGGAAAAAGTACGGCTCAGCGTGGGAGGAATACTGCAAAGTTGTGCGTTACCGTATCTTGCCCGGGATTTACTGAGAGTCGCAGTGGACTTTTGGGGCACACCAAATTTTCTGAAgagaatataagaaaaaaaaatgtggtcaATTCTGTGAATTTCTAAACAAGCCAGCACAGTTAGTTTTCATCGATCAGCTTGGCAGCTATTTTGAGTCCTAGAAATGtactaaacttaaaaaaaaaaaaaaagttaggtgTTAAATCCCTTCATCATATATTTCTGAAGTTGCCCCAGTTGACGCTCACCTGGATATGTATATTAATgtacataatgttttttttttgtttgttttttttctcgaACAATTGATCATccgtgtttgttttttttcttccatatTTGAAGTATTACATTTTGCTTTGCTTCTTAATTTTGAACTATTTTGTAACATTACCGTTTTGGTAAAAAAGcttttgtatattatatatgatgGGATATAAATGCCGTGTATTTGTATAGTAAGATGGCAGTTATGCTCTTTCTCAGGACCAGTGCTTTGTGAGAAGAATTCATTAGAAGATTTGTCTtaaattttttatgtaaatattttttgattatttttgctTTTGGTTTGGTCTTTTATCCAAAGTTTAAGATTGGGCTTTGCTACCTCAAGTCTGTTGTCAGTTTCTTCTACCCTGAAGAAAAGGTTAGATTGCTGATCATTTTGGTGATCCACAGCCTTTTATGCGTTGTGGGAGAATCattttgttaaatattattCAAAATTCACATGAAAGATATCTGGTTGTCTATTTCTATTTTAGCTACTGGGTCTCTTTTTGGTAGTCTTTATGGAGgctatattttattaaagtgcATAATTGATGCATTTCTAATTATTTTGTGTAATTAAATGATTGTTGCAACAGTCTTATGAGGAAGTGTGcattttaaaatagcatttttttaaatgaagtaaaaaaaaaggtattttcaTCCCTTTAATTTGCCAAGGTGCAAGCTTTGTGTGGGTTGTGCTTGGCAAATTAAACAGCTGAATGACTGACATTAAATGCTAAATGTAAATtgatgattttgttttttaatttctgtaaacaaacaaaaaatctcACATATGAGTTTATTTTGCTTTgaatattttactgttattttgtgAAAATGGGGTCATCAATCAGGAACCTGCAACCTTTTCGATTGTAGCTAATCTGTTTCTTTAAGGAATGGATATTTTTACCCAGTACTTAACGCAAAGCGAATGATTGTCagcttaattcatttttaatcattaatgtttttcccaATAAAAGCCCACTGTAGATCAGAGTCCAGCAGGAAAAATTAAACTAGCAAATACCATGTTATTCCACTGCAGTGTACatatgttttgttcatttttgtcttttatggATTTTAGTAAATTTAGTTAACATTTTGTTAGATATTTAATGttgcaaattatttaatttttttactcgATGGTTGAGCACGTTTCTATTatccttatttgtttattttgttcttgTAATATTGTCTGTTTTCGGTCAGCAATTCAAACAGTCGTTTCTCATAAAATGGTGCGTCTTCCAGTGTAATGGAGGTATATGAAATTACAAACTGTCACAATAGTTCAGATTTCCTGACCTAAAGGTCAAACCTTATGTTGTACAAAgtgttttgcaaaaaaataaaggttttaagtattttgca

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0005637 nuclear inner membrane cellular_component

KEGG:

id description
K19532 LBR; Delta14-sterol reductase (lamin-B receptor)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44203 lncRNA downstream 94147 73533661 ~ 73536104 (-) True G32937
TU44204 lncRNA downstream 94147 73533661 ~ 73536104 (-) False G32937
TU44151 lncRNA downstream 302097 73326367 ~ 73328154 (-) True LOC111191385
XR_002649474.1 lncRNA downstream 303281 73326372 ~ 73326970 (-) False LOC111191385
TU44148 lncRNA downstream 304884 73319644 ~ 73325367 (-) True G32900
TU44391 lncRNA upstream 224703 73864127 ~ 73868538 (-) True LOC111191425
XR_002649487.1 lncRNA upstream 225639 73865063 ~ 73868536 (-) False LOC111191425
XR_002649486.1 lncRNA upstream 225639 73865063 ~ 73868536 (-) False LOC111191425
XR_002649489.1 lncRNA upstream 225782 73865206 ~ 73868536 (-) False LOC111191425
TU44407 lncRNA upstream 243469 73882893 ~ 73884914 (-) True G33076
XM_007245407.3 mRNA downstream 21043 73604327 ~ 73609208 (-) True LOC103031805
XM_007245406.3 mRNA downstream 194037 73429168 ~ 73436214 (-) True spats1
XM_007245404.3 mRNA downstream 328225 73271560 ~ 73302026 (-) True ptchd4
XM_007245399.3 mRNA downstream 502563 73091575 ~ 73127688 (-) True tnfrsf21
XM_007245400.3 mRNA downstream 502571 73091575 ~ 73127680 (-) False tnfrsf21
XM_022666316.1 mRNA upstream 7745 73647169 ~ 73747910 (-) False enah
XM_022666309.1 mRNA upstream 7745 73647169 ~ 73723113 (-) False enah
XM_015604835.2 mRNA upstream 7745 73647169 ~ 73714487 (-) True enah
XM_022666301.1 mRNA upstream 7745 73647169 ~ 73714482 (-) False enah
XM_022666329.1 mRNA upstream 7745 73647169 ~ 73714468 (-) False enah
TU44213 other downstream 77368 73552415 ~ 73552883 (-) True G32946
TU44174 other downstream 241639 73387862 ~ 73388612 (-) True G32914
TU43886 other downstream 932241 72697673 ~ 72698010 (-) True G32714
TU43757 other downstream 1087804 72527783 ~ 72542447 (-) True G32611
TU43689 other downstream 1387981 72241530 ~ 72242270 (-) True G32557
XR_002649482.1 other upstream 118546 73757970 ~ 73778866 (-) False ak9
TU44385 other upstream 157039 73796463 ~ 73868538 (-) False LOC111191425

Expression Profile