RNA id: XM_007245427.3


Basic Information

Item Value
RNA id XM_007245427.3
length 3437
RNA type mRNA
GC content 0.47
exon number 26
gene id c3h1orf112
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73955811 ~ 73970935 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaacacataaaagcAGCGGTATTGggtcatattaaaaatgtactgtagTGTTAAATTAGGAACTGTTCTGTGACACATTTAATGAGCGTTTTGACTATTTTAACAAGAAATGCAGTGTGAACCCCTCAGACTGAATGGACTCGTCCCTGTGAAGCAGTGTTGAGGAAGAGGAGGCAAATTCAAAACACGAGAAAGACTCAAGTTAATTTTACACTAAAACTACTCTCGTATTTCCATCAACTGACCCCAGACCCGTGGTCTATTGAGTTGTATGTTTGATCAGTATGGTCGGACAGCGGTGAAGCTTGTGCAATGTCTCAAACTACACTTTTGGAGGAGGTTGTTCAGTGGAGTCCAGAGACATGCAGACAAGAAGTCAAAGTGGTGCTGCCCAAACTAGTCGCCATGCATCACAACACTAATAGCTGGGAGGAACACATCAATGTCTTGAGAATTATTGTAGACATGTTCCTCCCTCATTTACATCTGGCAGAACTGGAGGAAGAGTGTTTCTCCAAAGTCCTACCTAAAGTGGTGGTAATATTCACTGGGTTTTTGGAAGAGATCTCCAAGCAAATTGGAGGCCTGTCTAGCCAAAACACAGAGTTGCAAGCATTCCTCAGGAACATATTGCAGATGATGGTTCAGACCCTGGAAGCTCTGTCAGGATGTGTGCGTCATGTGTGCTCTTTTGAGGAAGCTGTCTCCCTGAACTCCATTCGTACTCTGCCCTCCTGTGTTCTCCAGCTCCTGAAGGACACCTTTCAGCATTGCAAGgAGAGTGAGTTAATGTACAGTGGAAGGCTGTCACTTGTGGGAGATCTGCTGCAGGGTCTGTTTAAAGAAGCCTATTCACTACAGAAAAGCCTgatggagctgctggataagaTTAGCCTAGAGAACAGTGCCTCCAGAGAGGGAATATCTGATATAGTGGCAGtgatcCACAGTCTGCTGGACATATGCTCAGTCATATCCTCCTTGGACATGGCACTGCATGCCAACACATGGAAGTTCATTATAAAACAGAGCATGAAGTATCAGTCCATGGTAGAGGAGCACCTGCGGCACACTGACATTGCATCCTCTTTGTGTGAGGGCCTGCTGGCATCTGTGTGCAGCTCACTGGAGCTTGCAGAGCAGGTGCAGCGTGCAGGACTGCAGGAGGCAGTGCAGTGTGCTGAATTTAAACTTTTCCAGAAGACCACAAAGATGTGCAGGTTTTTTGCCAACACTTTAGTTCACTATATAAAGGAATTTAAACCATTTCTGTCCAAATCCTGCAGTCGTTTTCACCAAATGTACCTTCACATTCTCAGTAAATTTCCACCAAGTGTCAGTGCCTCCTCTGTGCCCCAGGGTATGGGTGAAGAACTCAGTGCGGCCGTGTTGGTTCCCATGGATGCTGTGCTGACCCAGCTTCTACCTCTGAGACCTTTTGCTGAGTGTGTCCTGGCCCCAGCTCAGAAGTGCAGTACAGAGCTGGCTCTTCCTCAGTGTTTGCTTCTGGTGGATGTATTGGGGAAGCTTTCCTCTGAGCCGGAGGAATCACTGCACCTCTGGTGTGATGGCAGCCAGTTCTCTGAAGAAGTACCCAGGCTGTCTGTTTTTGAGGCTATGTTTTTGAGTTTTTGCCGCTGTCGAGTAGAGCGGGCCTTGCCGGTGCGTCTGCCGGGGGTGATGCTGCATGGTCAGGCTCAAGGCAAGGTCAGCCTGCACCAGCATGTTTGTGTGCATCTCTGTGGCTTTGTGGCATCACTTCCTGCTCAACACTTTCCTCTGCTGGAACGCTCCCTGTTCGGCGCTGTGCTCCAGTCGGACATCCAGACAACTCTCTTAGCCACAGACGTCTGGTGCTTCCTGGCACGGTATGGCACAGCTGAGTTGTGTTTACACCACGTTCTCCTCACGGCTCACCTGATAAAGTCATGTCCAATTGAGGGTTTTCGACTGGCCCACCTAGGCCTTCTGCTGAGACGCCTGCTCTTCCTCATGACTCCAAACCACCAGATGGAGTTTGTTGAACGCTTCTCTCCATCTGAGGAGGACAACCTGTGTGTGTGGCGTTTGGCTCTACTCAGGAGTCTTTGCTCTGAGGTGCGTTTACGTGTGGAGAGAGAGGTGCTAAACACAGTGCAGTCAGCACTGCACTCCTGGCAGGCCACAGGCTACAGACTGGGGAAAGTGCACACACTGAATAAGACACTGGGCTGCATGCTGGTGGTGGTCCGAGGGGAGCCCCTGCAGGCTGAATATTTAGGTTCTTCAATGAAAATTATTCACCAGCTGTGGGGACGGATGTGTGCTCTTCAGGTGCAGGCCCATACCTCTCTTCAGAATACCTTAAGTGTGCTTCTGTCCATTTCAGCGATCTTGATTAAAAATCTAGAACCACATGCCATAATTCAGgcaTTTTCCTGCCTGAGTGTCCTAGAATTACAGGAGTGCCCTGATTACTTGGTCTTGGCTGCTTTGGAGTTTCTGGCCTCCATGGGGAAAGTGTTTGTTCCCTCAGATATTCAGTCTCAGGTGCTGCCTAGACTCAGTTCCCTGTTCAGCACTCTACTGGCTTGTAATTCCTGGTTGATTCGTCAGCACGCCCTGAAGGCCTTCGCCATTTTTGCTGAGGTCACAAATCATGAGGAGGTCATCTCTCAAAGTCTGACATCAGAAGAGACAAAGAACCAAGTAGTAAATTTTCTCAGTAAGGCCGTCACAGCACAGGAGGCTGAAGGGGTCTGTGTGGAAAGGCTGAGGGCAGAAGCAAGTGTGATGGAAAGGCATATTGAGAGTTTGGAGATTGAAGAAAAAACACCTGTAGATGTATCTGTTGATGAAGAGCCATGTGCAAAGCGGCCACGCCAAGAGACCAGCAGGGAGGAGGAGTATGACCGTTACCTGCAGACAGCAGAAAGTGCCCTTAAAGCACTGCTGGCAGTAGAAACACCCAACACAACCTCACCCTGGCCACAGTGGGTAAACAGGCTCCAGGCCCTGCAGACACTCATCAGCAGCCACATCAGCACTCCTTCAACTGACAAAACCTGATGCACATCTTTCAACACAATACAAAACcagctttatgttttttgaaaatGTCCCTTAAGTTTATAAGAGaaacattttctcatttttattactcCCATGTCATTTTTTTGATGATGCTCAGTCTTTGGTTAATGCAAATTTTAGATGATTCAGGTTCTATTGATGGACttgtaaacaacttttattggaGCCTACGGATTGTTATTTAGAGTATTAGTCATTACACCAATGCAAATTGGATGTCTATCTGTAATAGTACAGTCTTGTTTATAATAGCTTATTTAAAGGAATCGCTCCTGCGTGTGATTGATATCTTTGTGATTAAGATTTAAAGTGATCTTGAGCTTGGAatatgttatataaataaaattcattattattactgttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44430 lncRNA downstream 2269 73950912 ~ 73953542 (-) True G33091
TU44407 lncRNA downstream 70897 73882893 ~ 73884914 (-) True G33076
TU44391 lncRNA downstream 87273 73864127 ~ 73868538 (-) True LOC111191425
TU44444 lncRNA upstream 20807 73991742 ~ 73992572 (-) True G33099
XM_022666462.1 mRNA downstream 16137 73931397 ~ 73939674 (-) True LOC103035214
XM_022666464.1 mRNA downstream 16332 73931397 ~ 73939479 (-) False LOC103035214
XM_015604817.2 mRNA downstream 142670 73784007 ~ 73813141 (-) False LOC103034242
XM_007245416.3 mRNA downstream 142670 73784007 ~ 73813141 (-) True LOC103034242
XM_007245413.3 mRNA downstream 176945 73756908 ~ 73778866 (-) False ak9
XM_007245426.3 mRNA upstream 6256 73977191 ~ 73979734 (-) True LOC103037051
XM_007245496.3 mRNA upstream 54670 74025605 ~ 74043117 (-) True LOC103031184
XM_007245430.3 mRNA upstream 77004 74047939 ~ 74086439 (-) True LOC103038456
XM_007245431.3 mRNA upstream 77004 74047939 ~ 74086437 (-) False LOC103038456
TU44385 other downstream 87273 73796463 ~ 73868538 (-) False LOC111191425
XR_002649482.1 other downstream 176945 73757970 ~ 73778866 (-) False ak9
TU44213 other downstream 402928 73552415 ~ 73552883 (-) True G32946
TU44174 other downstream 567199 73387862 ~ 73388612 (-) True G32914
TU43886 other downstream 1257801 72697673 ~ 72698010 (-) True G32714

Expression Profile