RNA id: XM_007245429.3


Basic Information

Item Value
RNA id XM_007245429.3
length 3499
RNA type mRNA
GC content 0.47
exon number 14
gene id scyl3
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73946078 ~ 73954704 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGAAAGAGACAGCGCTAGTTTAGTCTTTTAAAGTTCAGAACAGAGTCTCTCGACTGTAGATGTACTAATTTACAGACCTGTGTCTGTAAGGATTAATCCAGTACCgcgcgctgtgtgtgtgtgagagagagaggggcgggaCAGGGCGCTGGGGGAATGGTTCGGTCCCGGCGGGCGGTTGGCCGGTGTTTATGACTGGGGAACAGGATGTGCGCTGGGCTGCGGGGATAGAGAGTAGGCTGGATGTGTTAATGCTGCCGCTTATCACAGCAGCTCTGTGTCTGCTCTCGGTAATTAACAGTTTGCGGAGAGTCCACCTGACCTGACTGGAGCCGGAGTGTAGAGCTGCAGGTCAGGTCGACATGGGAGCCGCCGGAGAAATCCACTGATTCACTGAGCTGAGGAAACGACACGGCCGCGCAGTTGGCTGCAACCATGGGTGCAGAGAGCAGTGCCCTGCGGAGCTGCATCTTGGAAGAGCCGTTGCTGACGCTGCCTTCAGGACTCACAATGTACTCTGCCATCTTACAGGATGGAAAGGCTGCCTCTGTGTTTGTCTACAAGCAGGGCAATGAAGACAAAGTCAACAAAGCTGCCAAGCACCTGAAGACTCTGAGGCACCCAAGCCTGCTGCGGTTCCTCTCTTGTTCTGTACAGAATGGAGGCATTCACCTGGTAACGGAGAGAGTTAAGCCGTTGGAGTTGCTGCTTGACAGTCTCACGCCAGAAGAGATCTGTGCAGGCATTTATGACCTGTTGCAGGCTCTCGTCTTCCTCCATGACAGGGGCAAATCAAGCCACAACAACGTGTGTATGTCCTCCGTGTTTGTCAGTGAGGATGGACATTGGAAGCTTGGAGGAATGGAGACAGTTTGCAAGTTTGCAGAAGCAACACCAGAGTTTCTTGCCAGTGTTGCAACAGTAAGAGAAAGCAGTGCTATTCCTCCTGAGGAGAAGCTGGATGGGTTTAAAACACTTCCCGACAAGCACGCCCACTCGCGTGACGCCTTCTCTTTTGGTGTGCTGGTGGAGGCCCTCATTCCTCTACTGAATGGATATGTGTCTGAGGAGCTGGCAGAGAGTCTAAGGAGCATGCTGCAGGTCAGCCTGCTGACCCCTGACCCCACAGCAAGATCACCCCTCAGCAGTCTACTGACTCACGAGTTTTTTAGGAATGACTTTCTGGACATCATGAACTTTCTGAAGAGTTTGACTTTGAAATCTGAAGAGGAAAAGCATGAGTTCTTTAAATTTTTGCTGGACCGAGTTCATAGCCTTCCAGAGGAGTTGATAGGTGCTCGTTTAGCTCCTAAGCTGTTGAATTCCCTGGTGTTTGCTGAACCTACAGCTGTGAAAAGCTTCCTGCCTCACCTTTTACAGCCAAAGAAAGACTCTGGAGTGGGGGTTGCTGATGAGTGTCTGCTTTCTATGCCACTGTATCGGAGGCATGTGTTCCCACAGCTTCTGAAGCTCTTCAAAGTTAATGAAGAGCATGTGCGGATGGTGCTCCTCTCGCATATACACATCTATGCTGAGTTCTTCTCGCACGATGAGCTGAAGAACCAGATCCTACCTCAGgtGTTGCTGGGAATGAGGGACACAAATGATACACTGGTTGCAATGACATTACAGGCTCTGGCAGTACTAGTCCCACTGCTGGGTGCGGAAGTGGTGGTGGGTGGAGAGAGGACCAAGGTCTTTAAACGGACCACACCAAACTTTACCAAGTCAACAGAGGTTACCCCAGAAACCTCACCGGTTCATATTGTTGGACGGTCACTTCCCCATGTGTCACAGCCATCAAAGATTATGAGCCTGTTTCCAAAACCTTCTGAGGGCAAGTCGCTAGTTCTGGAGAACCtaagctctattcaaaaagttCACCCTTCAGCATCAAAGACAGGGGTGAACAAAGACATGACACTTCCTTTGAATGGCTTCAACAAAGACAAGCAGAGAGAGAACATAAGCAGAATAGCCAAGGTTGAGGATGAGAACTGGCCTGACTGGAGTGATTCAGAGGAGAAATCGGACAGAGACGAGGGTCAGCCTGTCCAAATCAACATATGGCACCCAAACACTGCCTCTGAATTGCCGACCACTGCTGAAGGCAATATAGAGGAACCCTGGGACGATTTTGAAGATTCAGAAGTAATCTCGGATCAGTCGCCTACGACACCAACACTGGCCCCGGTGTCAAGGGCCTCAAGAGACCGTGCTGCTGTATCTGTACCTACGCCTAGTTCTGGACCTCAAAAAGTGTCTAAAGCACTCCAGCTGAGCTCTAGTGTGAAACCTTCTCCAGAGCAGAACACATCATGGGATACTGGCTGGGACCAGAGCATTGAAGACCTCCGGGCTTTTCAACCAAGTTTATCTACACAGTCCAAGCCCAAAACTGCACAGAGGAGTGCAGGAACGGAAGGACTGGGAGAGGAGTTCACTATTGAAGTGAAAAGGAAGCTGGAGAGGGATCCAGAGCTGGACTTCTTTGCTGACATGGTACCAGACATAAAGCTGTCCTCTTCTTCCATGCTTGTCCCAGCAGGGAGTTCAGTGAACAAGTCATCAGGACTTACAGCTGGACCATTATCTCACGCTGAGCCAGAGAGTAGAGGCGCAGTAGACCCACTGCACCTGACTGCTAAGTTTGCTGCAGTGGATCTGACAGAGACTGAAGCAGAGGGATGGGGTGATGGTGATGAGCTCAACTGGGAGGATGAAAATGCCTGGTGAGGAACTAATCTTATCATGAAGCCATAAAAGGCTGTGCAAAAGACAAATCAGTTTACAAAGTCGGTGCAAATATGGATATTTCCAGTGTTAGCTGATAAAACACCTCCCAACACTACCTTTTATTGTGGAACTGTTATCTTAGTGCTACTAAAGCAGGAGCATTAAAGAGGTTAGCTTTGCCAACATTTATGGTGATTGGATTATGTTCTTGAAACATTTATCCATTTCAAATTATATTGCTGTACCAAGGCGGCTGGATTTCTTTTCATTTGCCTCAGTTTTATAAAGATATGTGATAATTCAGGAACATTGTGATAAACAGGTTTGATTGACAACAAGCaggcattaaaaatatttttttttgttagaatgACTTTCAACAAAATTAGTTTTTCTATGTTGCAGTTGTTGTTcttggaagtttttttttttttttttttttttaatcagttccTTCAATTTGTCCAAACAGCTATTTGCCAAGTTGTGACAAAACCAATCTTCTTTCACTGGAAGTGCATATGCTACATTTGTCtttagttttattctgtttttattttgtgccATAAACCTCACATCCATTCTACCTATTCAAAGAAAGAGCCTTATAGAATAGCCAGTCtcaaataaatgtgtatatatagagaatatattgaaataaaagTTTCGGGGCAGGGTTGtgcgagtgtgagagagtgaaagagagaatgccataatttatttgtattgtcaGCTACTGATGGAATAAAAGGTTTTATGGTA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44334 lncRNA upstream 10193 73935146 ~ 73935885 (+) True G33043
TU44332 lncRNA upstream 12273 73933159 ~ 73933805 (+) True G33041
TU44229 lncRNA upstream 309386 73634296 ~ 73636692 (+) True G32961
TU44228 lncRNA upstream 312449 73630287 ~ 73633629 (+) True G32960
TU44226 lncRNA upstream 325211 73620566 ~ 73620867 (+) True G32959
TU44343 lncRNA downstream 1180 73955884 ~ 73960904 (+) True G33051
TU44347 lncRNA downstream 12515 73967219 ~ 73970910 (+) True G33054
XM_007245422.2 mRNA upstream 14710 73907862 ~ 73931368 (+) True LOC103035930
XM_007245424.2 mRNA upstream 14710 73907862 ~ 73931368 (+) False LOC103035930
XM_015604832.2 mRNA upstream 14710 73907862 ~ 73931368 (+) False LOC103035930
XM_007245425.2 mRNA upstream 14710 73907862 ~ 73931368 (+) False LOC103035930
XM_022666412.1 mRNA upstream 61650 73879666 ~ 73884428 (+) True pdc
XM_022678556.1 mRNA downstream 33797 73988501 ~ 74016347 (+) True selp
XM_022666494.1 mRNA downstream 44879 73999583 ~ 74004379 (+) True sell
XM_022666519.1 mRNA downstream 142475 74097179 ~ 74126080 (+) True LOC103039489
XR_002649475.1 other upstream 439091 73439056 ~ 73506987 (+) True LOC103030552
TU43802 other upstream 1349141 72595906 ~ 72596937 (+) True G32641
TU43523 other upstream 1965715 71964004 ~ 71980363 (+) False dab1
TU43257 other upstream 2776522 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 2804894 71137512 ~ 71141184 (+) True G32225
TU44367 other downstream 35801 73990505 ~ 73992259 (+) False selp

Expression Profile