RNA id: XM_007252931.3


Basic Information

Item Value
RNA id XM_007252931.3
length 1537
RNA type mRNA
GC content 0.47
exon number 14
gene id psmc6
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52367883 ~ 52374147 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gctagctggctaaagctagtacagcagcagcagcagtagtatcgCAGGGGGATCATGGCTGACAGCAGGGAGAAGGGACTACAGGACTATAGGAAGAAATTACTGGAGCATAAAGAGATCGATGGGCGTCTGAAGGAGTtgaGGGAGCAGCTGAAGGAGCTCACCAAGCAGTATGAGAAGTCTGAGAATGACCTGAAGGCTCTGCAGAGTGTTGGTCAGATTGTTGGGGAGGTATTAAAACAGCTGACTGAGGAAAAGtTTATTGTAAAAGCTACCAATGGACCTCGATATGTGGTTGGCTGCCGGAGACAGCTGGACAAAACCAAGCTAAAGCCTGGAACCAGAGTGGCTCTGGACATGACCACACTCACCATCATGAGATATTTGCCACGTGAGGTCGACCCTCTGGTGTACAACATGTCGCATGAAGACCCAGGCAGCGTGTCGTATTCAGAGATTGGTGGACTGTCTGAGCAGATCCGCGAGCTCAGAGAGGTGATCGAACTGCCACTGACCAATCCTGAGCTCTTTCAGCGTGTGGGCATCATTCCCCCTAAGGGGTGCCTGCTGTATGGACCTCCAGGTACTGGAAAGACCCTTCTAGCTCGTGCTGTGGCCAGTCAGCTGGACTGCAATTTCTTAAAGGTGGTGTCCAGCTCTATTGTTGATAAATACATTGGTGAGAGTGCCAGGCTGATCAGAGAAATGTTCAACTATGCTCGGGACCACCAGCCATGCATCATCTTCATGGATGAAATCGACGCCATTGGGGGTCGCCGCTTTTCTGAGGGAACCTCTGCAGATAGAGAGATCCAAAGGACACTTATGGAGctTTTGAATCAAATGGATGGCTTTGACACTCTGCATAGAGTGAAGATGATCATGGCCACCAACCGCCCTGACACACTGGACCCAGCTCTGCTGCGACCCGGCAGACTGGACAGGAAGATCCACATCGAGCTGCCCAATGAACAGGCCCGTCTAGACATCCTAAAGATCCACTCTGGACCCATCACCAAGCATGGAGACATAGATTATGAAGCCATCGTCAAGCTCTCGGACGGTTTCAATGGAGCTGACTTGCGAAATGTCTGCACTGAGGCTGGAATGTTTGCCATTCGTGCTGACCGTGATTACGTAACTCAGGAGGATTTTATGAAGGCTGTGCGGAAAGTGGCAGATTCGAAGAAGCTGGAATCCAAGCTGGACTATAAGcctgtataaaatatttacgTGAGATCACAGCCGGTGGATGTTATGGAGACCATTCAGTACTTTTTGTTACTCTTAGTTGCAGaagatcttttttttgtgaactGTTGACCAGGGGCTTTTCTGATTATTACTGTCTCAATTAGTGTTACCATCCAGTGAGCTCAGCTGTAGGGAAACATATGTAGTCCAATACATCGACTGTTGGCCAAATATACAGGTCTTGAAAATTATAATACCAATTAGAACAATTTATATCACTATTATAAATAAGAGATGTTCCTTCCTGCCTTGTTATACATCATTAAAGTTTCATACTGAGTGA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K03064 PSMC6, RPT4; 26S proteasome regulatory subunit T4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002648588.1 lncRNA upstream 3711 52362005 ~ 52364172 (+) True LOC111188740
TU37165 lncRNA upstream 19627 52342948 ~ 52348256 (+) True G27701
TU37135 lncRNA upstream 52388 52315112 ~ 52315495 (+) True G27684
TU37133 lncRNA upstream 54649 52313035 ~ 52313234 (+) True G27682
TU37132 lncRNA upstream 56835 52310835 ~ 52311048 (+) True G27681
TU37186 lncRNA downstream 5709 52379856 ~ 52381005 (+) True G27716
TU37241 lncRNA downstream 154581 52528728 ~ 52531000 (+) True G27763
TU37251 lncRNA downstream 229799 52603946 ~ 52693356 (+) True G27772
TU37254 lncRNA downstream 293188 52667335 ~ 52672114 (+) True G27775
TU37263 lncRNA downstream 387452 52761599 ~ 52765175 (+) False LOC111188765
XM_007252930.2 mRNA upstream 40081 52321992 ~ 52327802 (+) True LOC103029411
XM_007258974.3 mRNA upstream 279218 52083282 ~ 52088665 (+) True dsel
XM_022662389.1 mRNA upstream 672866 51586207 ~ 51695017 (+) True tmx3
XM_022662247.1 mRNA upstream 784970 51503221 ~ 51582913 (+) False dnajc13
XM_022678348.1 mRNA downstream 8798 52382945 ~ 52400818 (+) True ddhd1
XM_007252935.3 mRNA downstream 29735 52403882 ~ 52412080 (+) True LOC103030894
XM_007252934.3 mRNA downstream 29735 52403882 ~ 52412080 (+) False LOC103030894
XM_007252940.2 mRNA downstream 200791 52574938 ~ 52609821 (+) True LOC103032675
XM_022662526.1 mRNA downstream 395095 52769242 ~ 52781864 (+) False LOC111188745
TU37134 other upstream 53617 52314025 ~ 52314266 (+) True G27683
TU36920 other upstream 1189509 51174488 ~ 51178374 (+) True G27489
TU36770 other upstream 1595722 50769885 ~ 50772161 (+) False lyrm2
TU36768 other upstream 1617946 50744907 ~ 50749937 (+) False nup43
TU36697 other upstream 2027806 50339710 ~ 50340077 (+) False moxd1
TU37199 other downstream 80284 52454431 ~ 52456164 (+) True G27729
trnac-gca_8 other downstream 94625 52468772 ~ 52468843 (+) True trnac-gca_8
TU37261 other downstream 385966 52760113 ~ 52765175 (+) False LOC111188765
trnah-gug other downstream 1248676 53622823 ~ 53622894 (+) True trnah-gug
trnae-uuc_2 other downstream 1249035 53623182 ~ 53623253 (+) True trnae-uuc_2

Expression Profile