RNA id: XM_007252933.3


Basic Information

Item Value
RNA id XM_007252933.3
length 2606
RNA type mRNA
GC content 0.42
exon number 6
gene id cgrrf1
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52374516 ~ 52382949 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTAAGCggatgtgtgtgagtggtgggGTGGGTTTGTTGTGACAGCGCTGAGTTCTCTATATTCAGCTTTTTTTCTCAgctttaaaacagtttaaacttTATCATTTAAATCTCCACACTCGCCTCAGAGCAGAGCGAGCTTCAGCGCGGGGATGGCCGCGGAGTTTCTGGTGAAACTGTACGAGTATTCCCCCGTTTTCTACATCAGTGTGATTTCAGTCTGCTTTATCATCACTGCAGCGGCGGTGCTGGGCTGGTTCGGCTTTGATGTGCCAGTGATTCTACGCAGCTCTGATGAAGCAGAGTCATTTTTGCCCGTCCCAGAGAAGAGGATGGTGCAGGTGACCAACCCCTTCTCACTGGAAATGGGTACAACAGCTGGTACTTTATTGGaTGGTGTGAGTCTTCAGTCATACTGTCTGGAGGAGTGTGTACTGAGTTGTTATTGGGGTTGTGGAGTTCAGGTTCTTCAAGCTGCACTGCAGAAACACCAGCATGACACTGCTCTCTCCACGCCACAGCTGTTCCAGCAGGCCCTGCAGCTTCACTACCTCCACTGCCAGACCTTCCAGTTACAGAAGGAGGAGCGAAAGGAGTGTTTCACAGAGCTGCCAGCAGATCTTGGAGTGACCGACTTTGGGCCGCTCCCAAGGGACCGGTACCCGTTAGTAGCTGTTCTGACCCTGGCCAACACTGAGCACAGAGAAACATATAATATAGTTTCCAGTGTAACGGTGCTTCACATCCCTGATGATAAATACAGATTGTCTGCAAGGATTCTGTTTCAGTATCTACTCACCGCTCAGGGGAACATGTTCGACTTAAAGCCTCTTTACATGTCTGCTGATAGCAGCATGCAGCCCGGATCCTCCACTGTAGAAGACCCTCCACAGTCTACCAGagcagaggaggagagagaggagccagagaaggaggaggaagaggagacaGGTGCTCCAGGCAGGGACTGTGTTGTGTGTCAAAACGCACCTGTGAACAGAGTGCTTTTACCATGTCGACACGCATGTGTGTGCGACGGATGTGTGGCACGGTTTCAGCACTGCCCGATTTGCCGGGCATTTGTTGTAGAGTCTTTTGCTCTGGCCAATCAGACACAAGCTGGGGATGTTGCAGAGGAGTGAGTTAGATATCGATCACATGATCAATATTAGTGGTGAgtattaaagggatagttcCTCTTTAACCTAATTTGTATCTGCTGTACCTGTTGTGTATGGCAAAttacaacagtaaaaaaacagtgGGTCAGATTAACTGTAATGTTAAATAGAGTAAATATagcatcacaaggacattttcacTTAATTGTAAACAAGGATTACTGCTAAGTCTTACAATTTCTGTGAAATGTAGAACTAGCGCCCTCGTTTGCCAAACCGGCAATTCATCCCGGCCCATAATGTCCCCACCCTGCTGTGCAAAAACTCAAATTTCTATGAACCCAACAGTTAATGTCCTGTTAAGCATGTCTGCCACTCACACTCAGCTGATAATTAACCCACATACTTAAAAGCTCATTCTAATCTATTTGAATTGAGCACAATGGTGAACATTGCAAATGCAGTTGAGAACAACTTAACTCTTTTTGAAAATGATTTCAGAACATTAATACAAAATTCACTGTTCACAGTTTCTTTCTTGCTGCTTCaagcagctcagccaatcagcttaaaCACAGATGCAGACTGAAGAGGGGTGGTTCTCCTGCACTGTCAATGTTCAGTCTGTGATGGCTGATGAGACCCTTGGGTATACAGAtgcttttactttcactttttcaTCTTGTTTAAGTGGCATGATTACCCAGCATTCCacagattttgtttgtttaggttttttGTGTTTATGCTGTATTTTACCAAACAGTGTTTTTGCATTTCATATTTGAATCTGTGACTCTGATTCAGAGACTTTGGCCcatttaaataatcaatcaGTAGTGTTGGTCATTTCTGTATATATGACCTCATTAGCATTTTGATTAAATGTTATAGaggtaaacttttttttttttgtatttgtaaaaacCTAATATTTTTGGTGAGGCTAATTTGCTACACCTGTGACATGGACTGTAATTACACTGCATTTTAATgttatcaaaatattttttaaatgggcAGACATTAATCAGTACAATGCAGTTATAATTAGTGCTGGAGCTATCTAGAGTAGTGATAGAGAACAACGTGAGTATCAATGAAGGCAGCTGTGCACtaacttttcatttttagaAAATCATGTTTCAAATTGAGATTTTTTCAATATGAAGAAAACATGGATTTTTATCTCATAtttattctttgttttcagTTGTAGCTTAAATATGGATTTTGTGTTACTAACTACTGGAGCAAAATGCTCCTGCTTGTTTTCTTGCTGAGAATGTGCTGTAGATGAGGTGCTACAGAAATCCATTTAAAGACTTCAGTGTTCAGATCCAGGAATGCTGGGATGCATTAAACTAGTACTTTTAACATGAATATGCAAATGTAGCATTTTGTCTGCTGTACATGTTTGTAAATCCCATCATAACGcaagtgaataaaataaaaacttgtgATCTGAGTTTATAATTAGCTAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37142 lncRNA downstream 65749 52308348 ~ 52308767 (-) True G27690
TU37141 lncRNA downstream 70539 52303601 ~ 52303977 (-) True G27689
TU37138 lncRNA downstream 78566 52293918 ~ 52295950 (-) False LOC103040973
TU37139 lncRNA downstream 78566 52293918 ~ 52295950 (-) False LOC103040973
TU37109 lncRNA downstream 191300 52181616 ~ 52183216 (-) True G27660
TU37233 lncRNA upstream 96732 52479262 ~ 52479538 (-) True G27755
TU37284 lncRNA upstream 338131 52720661 ~ 52779893 (-) False G27798
TU37283 lncRNA upstream 396001 52778531 ~ 52779893 (-) True G27798
TU37298 lncRNA upstream 399495 52782025 ~ 52782480 (-) True G27808
TU37325 lncRNA upstream 403942 52786472 ~ 52812630 (-) False G27821
XM_022662320.1 mRNA downstream 52596 52293880 ~ 52321920 (-) False LOC103040973
XM_022662323.1 mRNA downstream 52596 52293880 ~ 52321920 (-) True LOC103040973
XM_022662440.1 mRNA downstream 102136 52265048 ~ 52272380 (-) True LOC103029105
XM_007258977.3 mRNA downstream 879244 51484768 ~ 51495272 (-) False lztfl1
XM_007252936.3 mRNA upstream 55927 52438457 ~ 52445807 (-) True LOC103031417
XM_007252937.3 mRNA upstream 68773 52451303 ~ 52456147 (-) True LOC103031734
XM_022662303.1 mRNA upstream 102204 52484734 ~ 52490887 (-) True LOC111188512
XM_022662310.1 mRNA upstream 102204 52484734 ~ 52490710 (-) False LOC111188512
XM_015606810.2 mRNA upstream 143238 52525768 ~ 52554272 (-) True LOC103032373
XR_001518286.2 other downstream 1634082 50725063 ~ 50740434 (-) True pcmt1
XR_002648512.1 other downstream 1834844 50522899 ~ 50539672 (-) False LOC103034285
XR_002648511.1 other downstream 1834844 50535900 ~ 50539672 (-) True LOC103034285
XR_002648509.1 other downstream 1834844 50537655 ~ 50539672 (-) False LOC103034285
TU36802 other downstream 1842877 50481889 ~ 50531639 (-) True G27400
TU37335 other upstream 403942 52786472 ~ 52849906 (-) False G27821
TU37336 other upstream 403942 52786472 ~ 52827953 (-) True G27821
trnal-cag other upstream 1239746 53622276 ~ 53622358 (-) False trnal-cag
XR_002648645.1 other upstream 1668231 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 2174416 54556946 ~ 54623799 (-) False LOC111188920

Expression Profile