RNA id: XM_007252935.3


Basic Information

Item Value
RNA id XM_007252935.3
length 2588
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC103030894
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52403882 ~ 52412080 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAAACTCAAATGgggggaggcagtgagcggggGCTCCTTTGAGAAGCTTTAAGAAAACAGCAGATCTGAAGAAAGAAGAAGCAGGAGACCAGAGAGAGCCACCAGAGGCCCCTGGCACACTGATGATGAACATCCAGTCCAACATCAGCAGGGAAATCTTTGCCCCACAAGACGAGAAGTTACTGGTAGCTATTGaggtgaagaagaggaggaaaagGAGGCTGCCCTTCCTCACAGCTGGAAGGAAGAGAGACTATGTGACCTTCCTTTGCCTGTCAGTTACGAATAAGCGACCTTCTCAGGTCTTCATCACGAAGGTGAAGCAGTATCCTGGCTCTCCACGTTTTACCAAACGGTCCCAGTGGTCTGTAGAGCAGCTCCGCCGGGTCGATGGCATCAACCCCAACAAGGACACTCCAGAGTTTGATCTGGGGTTCGACCACAACCTTGACCAGTGGGTAGCCGGCTCGTCTGCAGAGAAGTGCATGTTTGTGCAGATTCTCTATCATGCCTGCCAGAACTACTGGGGTGGAAAGCTCGGGCTTGGGGCTGCTGGAAGTCAGAAGGGCCCAGGGGCCTCAGGGGAACAGCCAGATCCTGCAGGAGCtgtggaaaagaaaaaagcccCAAACGCTCCACGGCCAACAGAGTTCGTCAACTGCCAGTCCAAACTAATGGGTGATGCCTGCTCTGTCAACATGGTCATCTACcgctgtaagattttcctgaACCGCATGAAGAACACAATGATTGCAAGCCCTAGCCAGCTTGAAATTGCTGGCCTGAAAGCCCCCGCCACCAAAGCTGCCGCCACCAAAGCCGCCACCTCCAAAGCCGCCGCCTCCAAAGCAGCCGCCTCCAAAGCTTCCACCACTAAAGCCTCCACTGCTAAAGCCTCCACTGCTAAGGCCCCCTCTACTAAATTCTTCAAGCCTGTCTCCTCTCCTCCAGCCCAGAGGAGTGTGGGTAGTGTAGTTCGCAGGGCCAGTCATGTGCTGTCTGACCGCGACTTCAGGGTTGCAAgacaaatggcaaaacaaagaAGTTTGCCTTAAATGGATCAGATGCCCTGTCCAGTGCACCTCTAATCTCCTTGTTTAATGATCCCTATGCCATTTGTGTGGCtttaccttctttttttttggtacatgAAGGATCTAACACCCTTCCCTCTACAGAACTGAGCTGGATTGGACTGGACTAATGCAATGCTTCTGTCTCTGAATGTCTCTTCACTTCTCCAGGTCCAGTTTCCCGAAAGCTTTTTAGTATTAAGATCATCTTAACTACTTGAGAGAGAGTTTCATGTGAGGCTCACTCTGAGGCTTATGGGAATTCCAACCCTGGaaggtgtctgtgtgtgttggccTGTGAAGCACTAGGGGTCAGCATTGCTTCACAAAGGaaggtttgctttttttttgcctgtagGAAAGTAGAAGCTATTTTGTATAATATGTAGCTGAATAATGAAATGGTTTAAATGGTGTCACTGGGCATGCTCTTGGTGAGACTTGTGTAATATGTGCTGCTTAAGTGTTATGTCCAGACATGGTTTAAATGTTCTGCTGGTATTTCTTACCGAGGATGACCTGTTTGGGcttatttgtcttattttattAGTATATCAGCACTGCTGAATACTGAATATGCACCTTCAAATTAATGTATAATTGTATTGCTGTAGTTCCGCAACTGGGTAGCAAAATTAAACAAGTCCAGTTCGTGCATTGAGGAGAGGTAAAAAGATTGATATTTAGTGAAAGTAAAAAGTCAGATTGttacaaaataagaaaatactaaacacaagttgctttaaaatatgaattcactaagaaataaaacatcagaacaaagtgaaaaaaatataagagtatgaaagtaagaaaaaaatattagtagATGAGATGAACAGTAGACTAAGATCACTTTAAAATGTGTACTGGCCTGTGTTATAAAACTGACCcctattaaaattaattaaaatccattaaaaatTTGTGGACCCCTAGATATCCAACATATTATGTTTGTAACtaattgcaataatacataACTTTCTATAATTTCCAGGAATATTTACCTCACTAAAATCACACACATCCTCTCTTAGCAGCTAAAAGTGATTTATATCCCACATAATTTGCGTTTTAGTTAAATATGTACTGGTATAGTTTACCCTTAAAATACAACTGAAAAGTTAGTGTCCGCAAACTTTTGGCAGGCAGCGAATGTACCAACTCAAGCTGCAGGACATTTGTTTGTCTTCTGATTACTCTGTATTCATATATTTAGATCATGTCATTTTGAATTATGTGTGTCCTTCGGTGATAAAAAACACctatatgtattttaatcatGTCCAAAGTCATCTACTAATGCTTTTAACATTAATGACTGTCGTCAGGTATGAAGCACTCAGAGTTGATGTTATGACTCAGAAGTACTGTGCTGTTGTTTCTGTGTATAACTGTATTAACTGAACTCTGCTGTAACTGTTGTTGCTGTCTGTGTCCTTGTCTCAGGTAAATATACCTGTCTGAATGTTAACTTGTTTCTGTTCGtcagtaaatgaaaaaaaaaatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37186 lncRNA upstream 22877 52379856 ~ 52381005 (+) True G27716
XR_002648588.1 lncRNA upstream 39710 52362005 ~ 52364172 (+) True LOC111188740
TU37165 lncRNA upstream 55626 52342948 ~ 52348256 (+) True G27701
TU37135 lncRNA upstream 88387 52315112 ~ 52315495 (+) True G27684
TU37133 lncRNA upstream 90648 52313035 ~ 52313234 (+) True G27682
TU37241 lncRNA downstream 116648 52528728 ~ 52531000 (+) True G27763
TU37251 lncRNA downstream 191866 52603946 ~ 52693356 (+) True G27772
TU37254 lncRNA downstream 255255 52667335 ~ 52672114 (+) True G27775
TU37263 lncRNA downstream 349519 52761599 ~ 52765175 (+) False LOC111188765
TU37260 lncRNA downstream 352749 52764829 ~ 52767728 (+) False LOC111188765
XM_022678348.1 mRNA upstream 3064 52382945 ~ 52400818 (+) True ddhd1
XM_007252931.3 mRNA upstream 29735 52367883 ~ 52374147 (+) True psmc6
XM_007252930.2 mRNA upstream 76080 52321992 ~ 52327802 (+) True LOC103029411
XM_007258974.3 mRNA upstream 315217 52083282 ~ 52088665 (+) True dsel
XM_022662389.1 mRNA upstream 708865 51586207 ~ 51695017 (+) True tmx3
XM_007252940.2 mRNA downstream 162858 52574938 ~ 52609821 (+) True LOC103032675
XM_022662526.1 mRNA downstream 357162 52769242 ~ 52781864 (+) False LOC111188745
XM_022662521.1 mRNA downstream 358747 52770827 ~ 52781864 (+) True LOC111188745
XM_007252946.3 mRNA downstream 373579 52785659 ~ 52789369 (+) True LOC103033541
XM_022662560.1 mRNA downstream 398973 52811053 ~ 52816494 (+) True LOC111188773
TU37134 other upstream 89616 52314025 ~ 52314266 (+) True G27683
TU36920 other upstream 1225508 51174488 ~ 51178374 (+) True G27489
TU36770 other upstream 1631721 50769885 ~ 50772161 (+) False lyrm2
TU36768 other upstream 1653945 50744907 ~ 50749937 (+) False nup43
TU36697 other upstream 2063805 50339710 ~ 50340077 (+) False moxd1
TU37199 other downstream 42351 52454431 ~ 52456164 (+) True G27729
trnac-gca_8 other downstream 56692 52468772 ~ 52468843 (+) True trnac-gca_8
TU37261 other downstream 348033 52760113 ~ 52765175 (+) False LOC111188765
trnah-gug other downstream 1210743 53622823 ~ 53622894 (+) True trnah-gug
trnae-uuc_2 other downstream 1211102 53623182 ~ 53623253 (+) True trnae-uuc_2

Expression Profile