RNA id: XM_007252937.3


Basic Information

Item Value
RNA id XM_007252937.3
length 1440
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC103031734
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52451303 ~ 52456147 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGATGCCCAGCCGGGGCCACACAGCCGGGATGGTATAAAACCCGGGCCTGCACTGTCACAACCACCACAAACTCTCCACTGGGAAGCAGCTTCTGAAGAACATCTGCATCTAAGCCAGAACCATGTGTGACGATGACGAGACCACCGCTCTTGTGTGCGACAATGGCTCCGGCCTGGTAAAGGCTGGCTTTGCCGGTGATGATGCCCCCAGAGCTGTCTTCCCATCCATTGTTGGCCGTCCCCGCCACCAGGGTGTGATGGTGGGTATGGGTCAGAAGGACTCCTACGTGGGAGATGAAGCTCAGAGCAAGAGAGGTATCCTGACCCTGAAATACCCCATTGAGCATGGTATCATCACCAACTGGGATGACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCCCCTGAGGAACACCCCACCCTTCTGACTGAGGCTCCCCTGAACCCCAAGGCCAACAGGGAGAAGATGACCCAGATCATGTTTGAAACCTTCAACGTTCCTGCTATGTACGTGGCCATCCAGGCTGTGCTGTCTCTCTACGCATCTGGTCGTACCACTGGTATTGTGCTGGACTCTGGTGATGGTGTGACCCACAATGTGCCCATCTATGAGGGATATGCTCTGCCCCATGCCATCATGCGCCTGGACTTGGCCGGCCGTGACCTGACTGACTACCTGATGAAGATCCTGACTGAGCGTGGATACTCTTTCGTCACCACAGCTGAGCGTGAGATTGTGAGGGACATTAAGGAGAAGCTGTGCTACGTCGCTCTGGACTTTGAGAATGAAATGGCCACCGCTGCATCCTCCTCTTCCCTGGAGAAGTCCTACGAGCTGCCTGATGGTCAGGTCATCACCATCGGCAATGAACGTTTCCGCTGCCCAGAGACCCTCTTCCAGCCTTCTTTTATTGGTATGGAGTCTGCCGGTATTCATGAGACCACCTACAACAGTATCATGAAGTGTGACATTGACATCCGCAAGGACCTGTACGCCAACAACGTCCTTTCTGGTGGTACCACCATGTACCCTGGTATTGCTGATCGTATGCAGAAGGAAATCACTGCCCTGGCCCCCAGCACAATGAAAATCAAGatCATTGCCCCTCCGGAGAGGAAATACTCCGTTTGGATTGGTGGCTCTATCCTTGCCTCCCTCTCCACCTTCCAGCAGATGTGGATCAGTAAGCAGGAGTATGATGAGGCTGGTCCCTCCATCGTCCACAGGAAGTGCTTCTAAACGGCATCATCACTTTCCGGATGCAACCATTACCTCTGCCGGCAGGCTGCTTTCACCATTATGTCTTTGTCTTGTACAGTACGTTTACACCAAAGTGCAATTGTTGTTGTAGTTATTGACTGGTTCATTGatgaatttgtatttattgctttataaataaaagagaCCCGGGacttataaagca

Function

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0045471 response to ethanol biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0042493 response to drug biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0030049 muscle filament sliding biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005829 cytosol cellular_component
GO:0070062 extracellular exosome cellular_component
GO:0031674 I band cellular_component
GO:0042643 obsolete actomyosin, actin portion cellular_component
GO:0017022 myosin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K12314 ACTC1; actin, alpha cardiac muscle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37214 lncRNA downstream 50107 52365841 ~ 52401196 (-) True G27738
TU37142 lncRNA downstream 142536 52308348 ~ 52308767 (-) True G27690
TU37141 lncRNA downstream 147326 52303601 ~ 52303977 (-) True G27689
TU37138 lncRNA downstream 155353 52293918 ~ 52295950 (-) False LOC103040973
TU37233 lncRNA upstream 23115 52479262 ~ 52479538 (-) True G27755
TU37284 lncRNA upstream 264514 52720661 ~ 52779893 (-) False G27798
TU37283 lncRNA upstream 322384 52778531 ~ 52779893 (-) True G27798
TU37298 lncRNA upstream 325878 52782025 ~ 52782480 (-) True G27808
TU37325 lncRNA upstream 330325 52786472 ~ 52812630 (-) False G27821
XM_007252936.3 mRNA downstream 5496 52438457 ~ 52445807 (-) True LOC103031417
XM_022662441.1 mRNA downstream 68354 52374516 ~ 52382949 (-) True cgrrf1
XM_007252933.3 mRNA downstream 68773 52374516 ~ 52382530 (-) False cgrrf1
XM_022662320.1 mRNA downstream 129383 52293880 ~ 52321920 (-) False LOC103040973
XM_022662323.1 mRNA downstream 129383 52293880 ~ 52321920 (-) True LOC103040973
XM_022662303.1 mRNA upstream 28587 52484734 ~ 52490887 (-) True LOC111188512
XM_022662310.1 mRNA upstream 28587 52484734 ~ 52490710 (-) False LOC111188512
XM_015606810.2 mRNA upstream 69621 52525768 ~ 52554272 (-) True LOC103032373
XM_007252939.3 mRNA upstream 69621 52525768 ~ 52554247 (-) False LOC103032373
XM_022668102.1 mRNA upstream 184148 52640295 ~ 52641584 (-) True LOC103041285
XR_001518286.2 other downstream 1710869 50725063 ~ 50740434 (-) True pcmt1
XR_002648512.1 other downstream 1911631 50522899 ~ 50539672 (-) False LOC103034285
XR_002648511.1 other downstream 1911631 50535900 ~ 50539672 (-) True LOC103034285
XR_002648509.1 other downstream 1911631 50537655 ~ 50539672 (-) False LOC103034285
TU36802 other downstream 1919664 50481889 ~ 50531639 (-) True G27400
TU37335 other upstream 330325 52786472 ~ 52849906 (-) False G27821
TU37336 other upstream 330325 52786472 ~ 52827953 (-) True G27821
trnal-cag other upstream 1166129 53622276 ~ 53622358 (-) False trnal-cag
XR_002648645.1 other upstream 1594614 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 2100799 54556946 ~ 54623799 (-) False LOC111188920

Expression Profile