RNA id: XM_015606810.2


Basic Information

Item Value
RNA id XM_015606810.2
length 2306
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC103032373
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52525768 ~ 52554272 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGAGAGCgcgtgagtgagtgtgtgaatgtgtgtataggagtgtgtttaggagagtgtgtgagagactgaGGGGTTACGACCACGCGGACTGATCCTCTGCAGCATGAGCACTGACACAGGCGCGCGCACGGCACGGACACACACACGGCGCACGAGCCTCTGGAGctaagatacacacacacaaccacataaACATCACTGAGGACTACACACTACTGACACACTTACAAACATACTGACTATACTGAACtgaacttaaatatattaaacctGATCTGCATCAGGAGCTGCACATGCTGATGGCGCAAAGGTACGAGGATTTAGGGCAGTACGGTGGAGTAGATGGAGTGGGGTTGTATGCGGACCCCCACGGCCCACGGGCTCTGGGGCACCTGCACCATGCTCCCCCACAGGGCCACTACGGCACACACACGCCACACAGCATTATGGGTACGGGCATGGGTACGGGAATCAACGACTCACTGAAGAGAGACAAGGACCACATTTACGGTCACCCCCTGTTCCCCCTGCTGGCGCTGGTGTTTGAGAAGTGTGAGCTGGCCACCTGCACCCCCAGAGATCCTGGAGCAGGAGCCGGAGGAGATGTGTGTTCCTCACACTCCTTCAACGAGGACATCGCCGTCTTCGCCAAACAGaTCAGAGCAGAGAAACCTTTATTTACGTCTAACCCAGAGCTGGACAACCTGATGATTCAGGCCATCCAGGTGCTGCGGTTCCacctgctggagctggagaaggtgcaCGAGCTGTGTGATAACTTCTGCCACCGCTACATCAGCTGTCTAAAGGGGAAGATGCCCATAGATCTGGTGATTGATGACAGAGACGGCTGCAAGTCAGACTTTGAGGAGCTGTCAGGATCAACAAACCTTACAGACAACCCTGCATCCTGGAGAGATTTGGATGATGCCCACTCCACTCCCTCAGTCGGGACCCCAGGGCCTTCCAGTGGGGGTCTCGCTTCACAAAGCGGAGACAACAGCAGCGAACTGGgaGATGGTCTAGAAAACAACTTAGCATCCCCGGGAACAGACGAGGACGACCCagacaagaaaagacagaaGAAGCGAGGGATTTTTCCCAAAGTGGCAACAAACATCATGCGGGCTTGGCTCTTCCAGCACCTCACAcaccCCTACCCCTCTGAAGAACAGAAGAAGCAGCTAGCTCAGGACACAGGCCTCACCATCCTCCAAGTGAATAACTGgtTTATTAATGCCAGGAGAAGGATAGTTCAGCCCATGATTGACCAGTCCAACAGAGCAGTGAGCCAGGGAACCCCGTACAGTCCGGATGGGCAGCCAATGGGAGGCTTTGTTCTGGATGGTCAGCAGCATATGGGTCTACGACCTGCagCAGGTCCAATGGGTGGTATGGGCATGAACATGGGCATGGACGGACAGTGGCACTACATGTAACCCTCCAGACCGGCACCATGAACAGGGTTTTCACAGCAGCTCTTCGGGAAGCTCCAGCACTGGCCGAGGAGCGCTACAGACCAACTCAAAGCACCTGTCCTCGTtagaccacacacacatgctcactcTTCGCTCTGCATGGTGCTCCGGACCCCCCCACGCCCTCCCTCCCCACCTGCCCAGACCCAGCCTGGAGATACACACCAACACGGGACCACCAGAGGAGCTTAAAAACTCTAAAAGAAAGACTAATGAAAGGTCTGTCTGAGACCAGGCCTgctcagtttgtttgtttaaacatGACTGCATTGTTTatttggattattattattattatttatttatttatttgcgtCATATTTGATCATGAGGACCAGAACGTCTGGACACTTTTTCTCACTGtggataaactgaaacacacacacacacacacacagagaaagacacaAAGGTGCACTAAGAGTTCTCTGAgcaatgccatagaagaacctaTTTTATTTCCCTGAAGAAGAGAGGAACAAGATGCAGGAGTTTATAGAACCttcacacaatgtaaagaaaacatataCGGTAAAAAGATTCTTCTTATTTGCACAGTTGTCATTTCCATAAATGGTTCTCTGCAGGTTCTCCGGGATTCTTCTGTGGCAATAAAGTTAGCAATGGGAGCTATCTGGACTCCTTCGAACTTCGCCCTGAAGTTTATGCGCCAAAACGCTTGTGCTTGTAGTATTTCTAAAGCTTTTCGCCCCAACAAAATACATCAACAGATGGCTTTAGATTGCTACTTTAAGCATCACTATCTTGGAAAACTGAATTTTCATCGTCttgtttttgtaataaatgagtttgaagtaaaatgtaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37233 lncRNA downstream 46230 52479262 ~ 52479538 (-) True G27755
TU37214 lncRNA downstream 124572 52365841 ~ 52401196 (-) True G27738
TU37142 lncRNA downstream 217001 52308348 ~ 52308767 (-) True G27690
TU37141 lncRNA downstream 221791 52303601 ~ 52303977 (-) True G27689
TU37139 lncRNA downstream 229818 52293918 ~ 52295950 (-) False LOC103040973
TU37284 lncRNA upstream 166389 52720661 ~ 52779893 (-) False G27798
TU37283 lncRNA upstream 224259 52778531 ~ 52779893 (-) True G27798
TU37298 lncRNA upstream 227753 52782025 ~ 52782480 (-) True G27808
TU37325 lncRNA upstream 232200 52786472 ~ 52812630 (-) False G27821
TU37337 lncRNA upstream 243293 52797565 ~ 52816766 (-) True G27822
XM_022662303.1 mRNA downstream 34881 52484734 ~ 52490887 (-) True LOC111188512
XM_022662310.1 mRNA downstream 35058 52484734 ~ 52490710 (-) False LOC111188512
XM_007252937.3 mRNA downstream 69621 52451303 ~ 52456147 (-) True LOC103031734
XM_007252936.3 mRNA downstream 79961 52438457 ~ 52445807 (-) True LOC103031417
XM_022662441.1 mRNA downstream 142819 52374516 ~ 52382949 (-) True cgrrf1
XM_022668102.1 mRNA upstream 86023 52640295 ~ 52641584 (-) True LOC103041285
XM_015606803.2 mRNA upstream 115839 52670111 ~ 52717067 (-) True LOC107197707
XM_022662540.1 mRNA upstream 205781 52760053 ~ 52765844 (-) True glrx5
XM_007252947.3 mRNA upstream 205781 52760053 ~ 52765264 (-) False glrx5
XM_007252949.2 mRNA upstream 779693 53333965 ~ 53410069 (-) False LOC103035653
XR_001518286.2 other downstream 1785334 50725063 ~ 50740434 (-) True pcmt1
XR_002648512.1 other downstream 1986096 50522899 ~ 50539672 (-) False LOC103034285
XR_002648511.1 other downstream 1986096 50535900 ~ 50539672 (-) True LOC103034285
XR_002648509.1 other downstream 1986096 50537655 ~ 50539672 (-) False LOC103034285
TU36802 other downstream 1994129 50481889 ~ 50531639 (-) True G27400
TU37335 other upstream 232200 52786472 ~ 52849906 (-) False G27821
TU37336 other upstream 232200 52786472 ~ 52827953 (-) True G27821
trnal-cag other upstream 1068004 53622276 ~ 53622358 (-) False trnal-cag
XR_002648645.1 other upstream 1496489 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 2002674 54556946 ~ 54623799 (-) False LOC111188920

Expression Profile