RNA id: XM_022662540.1


Basic Information

Item Value
RNA id XM_022662540.1
length 1635
RNA type mRNA
GC content 0.49
exon number 2
gene id glrx5
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52760053 ~ 52765844 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACACAGGAGACACGGCGCCTGAATTTAAGCAGCACTGCCCGGAAATACCGTCGGTGCACGTTTACAAAATAAGAGTCTCTCTTAAGTATTTTTCATTCTGGTCATTTACCGCCTACACTGCAAAGTCATTTACACGTAAGCTATATTTAGCACGGATACGAGTGATAAACATGTAAAAGTTTGGCTTCATAACATAGCAGCTTGTGTAACACCTAGTACCGTATTTCCGGTAGCATTTGATCTGGGCCAGTCTCAAACACATATGTGCTCCCTATATAGTTAGGACACTATGTAAGAACAGTTAGAACAAATCCCACAGCCCGTCCTTGGTGTATTCTAAGAGCAGAAGTGATTTCAGCGTGCATCATATCACATGTATTACACTTGAGGGACGCCGAAGCCACACGGAAGATAATCGCATGGCGCACTTTGTAGGGAATATAGGAGCGTTTGAGACGCGCCCTCCCTGGATAGCGGCGGATTTGCTTTCCTGCGTACAAGAGCTGCGCACGATTGCGTTGAGAGACGTGCGCTTTAGCCAATCATAGAAAAGCACCAACACGCGTGCACCAATGAGCTTCTCAATGTGCTGCTTACCCGCTGGCGGGGCGGGGCTACAGAGATTTGTCTTGAAAAGTCTGGCTGGTCGTGGCGTCTCGGAGGAAGCGGTGAAGTCCAGCGAGTTTTTGgtcgtttgtttgttttgttggtgtttttttcaCCGTTTTCAGAATGAACAGTGTGTTCGGAGCGGCCGCTCGGTCTGTGCGGGCGCTGACAGCGCTCTCCAGGTTAACTCAGCCCGGCGGCGGCGCTGCGTGCTCGCGGCTCCTGTGCTCGGCTGAGGGTCAGAAGAGCCTGGAGGAGATGGTGAAGAAGGATAAGGTGGTGGTGTTCATGAAGGGAACCCCGGCGCAGCCCATGTGCGGGTTCAGTAACGCCGTGGTGCAGATCCTCAGGATGCATGGCGTGGACAACTACGCCGCCTACAACGTGCTGGATGACCAGGACCTCAGGCAAGGTCAGTGCAGATACGACCTCCTCCAGCAGGCCGGCTCACAGCGGGCCTGTCTCACCGCCTGGAGCAGCTACAGGTGGAATAACCAACctaattgagagagagagaactggGAGTGAAGACGTTCTCCAACTGGCCGACGATTCCTCAGGTGTTTTTTAATGGGGAGTTTGTGGGAGGCTGCGATATTCTCCTGCAGATGCATCAGAGCGGAGATCTGGTGGAGGAACTGGAGAAACTGGGCATCAGGTCCGCTCTTCTTGATGCAGAGAAGGAACAGTAGGAGCAGAGCCAGTCAGTGGGAGCCACGTGGATTTGGAGATGCGCACATTTCAACTGAGGCTGACCAGACCAAATTGCTTTCAGCCAACTGAAGGAAGTGATGTCAAGAGTACCAAAAACATCAGAAGTTCCAGTCTTCAGAACCACAATGCATCAACACGCACTTACTTTATCTCAGCTGTCTACTTCTGTGATCATTTTAGAAACACTCATGTAATGCACTGCATATTTAAGATGTACAATGGAAATATATTATGAACTGAAATATGAGCTGTAGATTTGaaataatacatactttttgtcaataaaatattttaaaggcaTTATATTCTTAA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0045454 cell redox homeostasis biological_process
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K07390 grxD, GLRX5; monothiol glutaredoxin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37233 lncRNA downstream 280515 52479262 ~ 52479538 (-) True G27755
TU37214 lncRNA downstream 358857 52365841 ~ 52401196 (-) True G27738
TU37142 lncRNA downstream 451286 52308348 ~ 52308767 (-) True G27690
TU37141 lncRNA downstream 456076 52303601 ~ 52303977 (-) True G27689
TU37139 lncRNA downstream 464103 52293918 ~ 52295950 (-) False LOC103040973
TU37283 lncRNA upstream 12687 52778531 ~ 52779893 (-) True G27798
TU37298 lncRNA upstream 16181 52782025 ~ 52782480 (-) True G27808
TU37325 lncRNA upstream 20628 52786472 ~ 52812630 (-) False G27821
TU37337 lncRNA upstream 31721 52797565 ~ 52816766 (-) True G27822
TU37357 lncRNA upstream 138933 52904777 ~ 52905476 (-) True G27836
XM_015606803.2 mRNA downstream 42986 52670111 ~ 52717067 (-) True LOC107197707
XM_022668102.1 mRNA downstream 118469 52640295 ~ 52641584 (-) True LOC103041285
XM_015606810.2 mRNA downstream 205781 52525768 ~ 52554272 (-) True LOC103032373
XM_007252939.3 mRNA downstream 205806 52525768 ~ 52554247 (-) False LOC103032373
XM_022662303.1 mRNA downstream 269166 52484734 ~ 52490887 (-) True LOC111188512
XM_007252949.2 mRNA upstream 568121 53333965 ~ 53410069 (-) False LOC103035653
XM_007252948.3 mRNA upstream 568121 53333965 ~ 53344744 (-) True LOC103035653
XM_022678355.1 mRNA upstream 923523 53689367 ~ 53715908 (-) True med23
XM_022662641.1 mRNA upstream 1073116 53838960 ~ 53907401 (-) False akap7
XM_007259689.3 mRNA upstream 1073236 53839080 ~ 53907403 (-) False akap7
XR_001518286.2 other downstream 2019619 50725063 ~ 50740434 (-) True pcmt1
XR_002648512.1 other downstream 2220381 50522899 ~ 50539672 (-) False LOC103034285
XR_002648511.1 other downstream 2220381 50535900 ~ 50539672 (-) True LOC103034285
XR_002648509.1 other downstream 2220381 50537655 ~ 50539672 (-) False LOC103034285
TU36802 other downstream 2228414 50481889 ~ 50531639 (-) True G27400
TU37335 other upstream 20628 52786472 ~ 52849906 (-) False G27821
TU37336 other upstream 20628 52786472 ~ 52827953 (-) True G27821
trnal-cag other upstream 856432 53622276 ~ 53622358 (-) False trnal-cag
XR_002648645.1 other upstream 1284917 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 1791102 54556946 ~ 54623799 (-) False LOC111188920

Expression Profile