RNA id: XM_007253905.3


Basic Information

Item Value
RNA id XM_007253905.3
length 3322
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC103046183
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 55565611 ~ 55574844 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gTTCAGGTAACTCCATCAAAACACTGTATGATATGTGGAACAGAAAGCTTACTGTGTGAAATCTGTAACTGCTCTTATCCAGCACCAGGCGTCGCTGTACTGCTGTATGCAGGTGAACCCATTTATCAGTTGTAACAGCTAGTTGATGGTAACTCGTGGTTTAGAGCAGTTGTTTCTCAGTGCTCGAGGTCCACCGCCCTGCTTTAACGTTAATCATCTGATCGAATGAATTATCCTCTGAGCTGGAAGCAGGAAAACACTGGAACCACCAGAACCAGGActgaaatgatttaaaataagcCTTTCATGAAAATGTTAATAGActcactaaaaaaaacagagattcTGTCTATTAAGCAGACTGTGGAAGCTGATCTGAGGTCAGCCGAACTGCTCGCTGTTCAGGTTTTGAAGGCACACAGAGAGGTCGCAGTGTCTGACCTGAACTCACTGTAATCTGCAGGCTCAGCACATTCGTGTagaggagagaaaggagaggGGGCTGTGTGATAGCACTGTGATCCACTGATCCACCACCAGTCATGAAAACCAGACAGCTGCAGAAATGTCCTGTGTGCCTCCTCCAGTACCAGAACAAGAACTTGGATAAGCATATGCACAGTCGATCACACCATGAAGCCATTGAGAAACTTAAGGGCAGtccGCAAATCCATAAATGTTTGGCCTGTGGGATTTCGGTGTGGGGGATGAGCCAGTATGAGAAACACATCATGACCCCTGGACACATTACCAACCTGATTTACCTTCAGAAAAACAGGTGGAGCAGAAGAAGGTTTACAGTGGATTACACTGATGATGAGCTGGCTGCTGTTTGTGCCGAGAGAGATCAGAAACGACTTGCCTTAAAgctgaaaaagaaaaaagagcaacAGCAAAGGAGGATGGCACGGAAGAAGattaagaagaaaataaagGCAAACAATAACCAGATAACACAAAGCAACAGTCAGAGCAGTAACAAGACACCACCTCTAAATAAGGAAGACACCCATGAGTCCAACCAGACTGTGGACTGTACAGACCATTTCTACTCTAATCGTCAGTCTAATCTGTGTTGCCCACCACTTCACCtcattttcatttctgaagaggaagatgatgacTGTTCACAGCAGAGGGGGTCAGCAATGAAGGAACAGATTCTAGATGCTAACCCTCCAGATTCATCCCCAGTAACAAGACCTTTGTTGTCAGATGTTCCAACAGTGGACCTCAAAACAGACATCAGCAGTCAACATTCCAACAAGAGCATGACTCAGGATACAGCTTCTGAAAAACCTACCCAATCACTCCATGCTTCTGGATTGGATCATAGACATGTAAATAGCTGCTTATCCACAACACCAAAAAGTATGTCTCCATCAGTACAGAAGGACCAGGttctttttatttgtacttCAGCAAGTTCAGACTTCTCTGCAGCAGATAGAGTTATGGAACTAAAGAAATCAACAGATGAACCCAGATCAAAACATGCAGAGAAATTTGCCAAAGAAAAGACACCACCCTTTACTCTGCAGAAGCCATGTCTGGGTTATAAAACACCTGAAGGATGTTCTTCAGAACAGTGGCGCAAGACTAAAGAGCTAGAAGCTAGGATTAAAGAAAAGTCTTCTCCACCAATGAAGCCCTCAGGTGGGTACAGTCTAGCAGCGCCCACAGCAGGTTTTCTGCAGGAGTGCAAGACCGACCAGCACAGAAACCAAGATTCTACACAAAGCACACACAACCTTCCGGCCTTGTTGAATCGATCTGCCACCAAAAGAGTTGCAAGCAAGCCCAACCTGAACATTGCTAGAGGTATTCATGCCTCTCAGAAGCCAAATAAGACCGGGAGTGCATCATTAAAACCTGCACTAGAGAAGCTCATCAATTCTAAAAGCTCCCAGTGGAAGGTGAACTGGAAGGAGATTTATGAAGAAGCAACAAAGAATAaactgcagaaagagaagggcTTACCCAGGTTCGGGATTGAGTTTGTGAGTCCACCTACACCTGGGCCACTAGAACTGATTCTGGATGAAGTGGCTTTTGATGAAAGCTGTCTGTGGGAATCTATCAACTTTAATGATGGAACTCCATTTTCCTCAGTTGTTCCCTTGAGTAAGAACACCTGTGGATCACAGCCAGCTGAGGCCTCTCCTGGTCCTAGTTCTGAGAACCACAATGATCAGACATCAGTAACAAAGTTCACTTCACTGCCGATGAAAACTCCACAAATAAAAAGCAAGAAGATGAAAAGTGGAGACATCAAAGATGCCGTAAAGAACATGGCATCACTGACAAACAGAACTTCTGCGCCTGTTACAGAGGCAAATGCCCTGGCTGAATTGCATGAGTCTGGTACAGAACAGCACAGCGGATCTGTACTGAACCCTCTCAGACACACAAAAAAGCAGGATGATCCAGACTCCAATATTAAGAATATAGAGATTCCAAAAAACACTCTAAGTGAATTGCTGGCGCTGTTTCATAGAGAAGAAGAGCTAAGATCCTATTTGGATCATGTGAACAGTCAACTGCTCCTGGCTCAGTCTGCTCTACGTGCTTCCCTCAGCAACGTTCAGAATCTACAAGAGATTAAACAGCAGGTCACTACAGAGATGGCCATGCTTATATCTAAGAACATTGAGGTCCTGCAGAGGATACAAAATTCCAGCTTATGTGGAAATGTTCCTATCTTTGGCACTGAGAGCCACCAGAGGGTGCCAGATACCCCCAGAGTGCAACAGGAACTTTCTTAAAGGCCAGTAAAGAAGTCCTGGTGCTGCATCCTGAGGACCcatccctccacacacacagagaacacactcCTTTAGTGGTTTTCAGTTTTGCTGTATGAATGCATTTTGTTGTATGTCTGCTAGTTCTGTCATAATAATTACCTCATTAGCCTATCGTACAATATAAGCACCTCAATCATTTTACTGCCATCAATATAGCTCATCAAATGTTTTCTGCccttattgtatttattggtCCATTATTATATATGTTGGAGAGATATTCTGCACTTAGACAGGATTGGTTGTTTCAGTTGAGTTATGTTGTGGACATTTTGTTTTGGAgaatttgttgttatttttgagTGATTTGTTGAAGCATTTAattttcttaataattaaataatttaatttgttttctgaTGTTGTTGTCCactattatcatttttatttggatcaGGGATGTTGCACTGTTTAACTTGCAGATCAGTTTTGCCGTgaatgtaagttttttttttttgttgtaatttaaaacagcttgtttaaatgacaaaaaatacacaGTATGTTGCAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38151 lncRNA upstream 917 55542249 ~ 55564694 (+) True G28417
XR_002648716.1 lncRNA upstream 78135 55483506 ~ 55487476 (+) True LOC111189292
TU38061 lncRNA upstream 100326 55462075 ~ 55465285 (+) True G28362
TU38058 lncRNA upstream 106311 55458993 ~ 55459300 (+) True G28361
TU38042 lncRNA upstream 175603 55380604 ~ 55390008 (+) False LOC103023616
TU38222 lncRNA downstream 319780 55894624 ~ 55952107 (+) False G28460
TU38223 lncRNA downstream 374783 55949627 ~ 55960470 (+) True G28460
TU38383 lncRNA downstream 523819 56098663 ~ 56100801 (+) True G28588
TU38389 lncRNA downstream 547293 56122137 ~ 56122799 (+) True G28593
TU38390 lncRNA downstream 551318 56126162 ~ 56126455 (+) True G28594
XM_022663014.1 mRNA upstream 5895 55541034 ~ 55559716 (+) True LOC103045772
XM_022663011.1 mRNA upstream 5895 55541034 ~ 55559716 (+) False LOC103045772
XM_022663020.1 mRNA upstream 5895 55541284 ~ 55559716 (+) False LOC103045772
XM_007243166.3 mRNA upstream 26527 55531687 ~ 55539084 (+) True slc35f6
XM_007253908.3 mRNA upstream 55126 55496106 ~ 55510485 (+) True LOC103047102
XM_007253903.3 mRNA downstream 24958 55599802 ~ 55615475 (+) True nrbp1
XM_022663102.1 mRNA downstream 91761 55666605 ~ 55888676 (+) False LOC103034817
XM_022663114.1 mRNA downstream 115766 55690610 ~ 55888676 (+) False LOC103034817
XM_022663117.1 mRNA downstream 115766 55690610 ~ 55886722 (+) False LOC103034817
XM_022663094.1 mRNA downstream 115767 55690611 ~ 55888676 (+) True LOC103034817
TU37650 other upstream 1186305 54378241 ~ 54379306 (+) True G28072
trnas-aga_8 other upstream 1911881 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 1912673 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 1913022 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 1913394 53652135 ~ 53652217 (+) True trnal-cag_6
TU38445 other downstream 657895 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 715912 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 762336 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 1827081 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 2235151 57809995 ~ 57812488 (+) False LOC103042006

Expression Profile