RNA id: XM_007253914.3


Basic Information

Item Value
RNA id XM_007253914.3
length 2481
RNA type mRNA
GC content 0.44
exon number 15
gene id lin9
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 55432080 ~ 55442139 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATggcggagctggagcagctgctgGACGAGAGCTCTTCAGCGAAAGCTCTTGTCAGTCTTAAAGAAGGAAGTTTGTCAAACACTTTAAATGAGAAAAACAACCTACCAAAATCTCAGAACACCAGGGGAAGGAGCAGCTACACGTCTATGGAAACGCCGACAAGAAGCTCGAAGAGGAGTCGCTTTTcctctgaggaggaggagggaacaGTCGCTTCAAGATCCCCGCGGCGGAGCCAGAGAGTGACCACTGTGCCTCAGAAACTTGCAAATGTCACAACACCTGACAAAAGAACCTCACAGAAGATTGGACTGAGATTACGAAACCTGCTTAAACTGCCCAAAGCTCACAAGTGGTGCATCTATGAGTGGTTCTATTCTAATATTGACAAgCCCTTATTTGAGGGTGACAATGACTTCTGTCTGTGCCTGAAGGAGTCTTTCCCTAACCTAAAGACCAGGAAACTGACTAGAGTGGAATGGGGAACCATCAGACGCCTAATGGGCAAACCCAGAAGATGTTCCTCTGCGTTTTTTGCTGAGGAGCGAACAGCACTGAAACAGAAGAGGCAAAAGATGCGATTGTTGCAACAGAGAAAGATCACAGACATATCTCTTTGTAAAGATCTGCCAGATGAGATTCCTTTGCCGTTAGTCATTGGCACTAAAGTCACAGCTCGGCTCAGGGGACTCCATGATGGCCTGTTTACTGGACAGATTGATGCAGTGGATACAAGTGCAGCAACGTATCGTGTGACCTTTGACAGAAGTGGACTTGGCACACATACGGTTCCAGACTACGAAGTGCTGAGTAATGAACCTCATGAAACAATGCCCATATCAGCCTTCGCCCAGAAACAGCGACCATCTCGCTTCCAGAACTTTCTGACTCCTCCACGAGGGGCATATCCTGCGTCAACCCAACCCATTTTAATGgacaatgaccctctCTTCAGTCAGTCCCCTTGGCGGAGTAAACTGACTGGAAGTGATGGAGACACACTGGGAGGATTTCCTGTCAAATTTCTTGTACAGGTGacaCGATTGTCTAAAATTCTCATGATCaagaaggaacacataaagcaTCTAAAGGAGATGAATACCGAAGCTGAAAAACTGAAGTCCTACTCCATGCAAATAGGTTTGGACTTTCAGAAGAGATATGCAACCACTGTTCTAGACCTGGAGCAGCTTAATAAAGACCTGAACAAAGTCCTGCATGAGGTTCAACAATTCTGCTATGAGCTGGCTCCAGATCAAGGCATGCAGCCTGCAGATCAGCCAAGTGAGCTGCGGAGGCGCTGCGAGAATGAAGCCGAGGACGTAATGAGGTTGTGCAATGCACTGCCGGATGGGGAACAGCGTGTCCAGAGCCCTGGCCTTACTCAGCTTGTTTCTCGTCTTACTACCATCTTGCTGCAGATCAGGTGCTTAGCAGAAGGAGGTGATCTGAACTCATTTGAATTTAAAGCATTGACTGATTCCTTGAACGACATCAAGAGTTCAATAGACACTTCTAATCTCagCTGTTTCCAGGATAATGTGGAGATCCATGTAGCACACATCCAGAGTGGCCTGAGCCAGCTGGGCAACCTCCATGCTTTCTCTGCCAACAACACCAACATAACGTGACTGAACCAGATTCTATACAAAACTCCTATTTCCAAACATGGACTCCGAGCCATCTCtgtcccactttttttttttctccccccctTTTTGTTTAGAGGTGTTTAAATGTTCCCTGACTAAACATGAACCGGCAGGCAGTTCCCCCCATACACTGTGTTAAATATGACAAACAAGCAGATCTGTTCAAATGGCCAGTTAATATGCTAAGGCATCCAGtttaagaaatgttaaatttatTGATCCTTCTTGATGTTCCTTCACCAATGTTAATCTAGTCGTATTGGCggtccttttatttttatggcTGGTTCCTGTAAGGTTTTTGCCAAATTCTACATTTTCCACTTGcggttcttttttatttttttgaagctGAAATACTTTAGAGTGGTGTTTTTATGCTCCCTTAGAAAAAGGGAACTTGATTTGCAACTTGTACAGTTTTGAGTGTCTACCACAGAGATAAATGTACTGTCCATTTTGAAAAATGTACATTGTAGATAATTGTACAGTGGACTCGTGTTATTAATGCATTGGCTGTACTTGTCAGTCAACATTTTATAACAacttttaagtatttttgtAAAGAACCAGATTTGATTTATATAAAGTCCCCAAGATGGAATGGCAGACAGCTGTGTGGATGGCACCCATCATATTGTTCTGTCCCCATGGCTGAATTTCTCCATCTGAGGAATATTTGCAGATACATCACTGGTGTATGTTCATTTAAGTGTTTATGGATTTTGCTTTTAGGTGTTTTTCACCAGTTGCTTTTATTTAACTGGTAACTGTATACTGCAAATGTGTATATACATTTTGTTCATTTCTATTAAATGCCAAACACCA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0017053 transcription repressor complex cellular_component

KEGG:

id description
K21773 LIN9; protein lin-9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38042 lncRNA upstream 42072 55380604 ~ 55390008 (+) False LOC103023616
TU37988 lncRNA upstream 267061 55163794 ~ 55165019 (+) True G28302
TU37986 lncRNA upstream 269124 55162490 ~ 55162956 (+) True G28300
TU37826 lncRNA upstream 733715 54695195 ~ 54698365 (+) True G28212
TU37800 lncRNA upstream 788652 54642032 ~ 54643428 (+) True G28197
TU38058 lncRNA downstream 16854 55458993 ~ 55459300 (+) True G28361
TU38061 lncRNA downstream 19936 55462075 ~ 55465285 (+) True G28362
XR_002648716.1 lncRNA downstream 41367 55483506 ~ 55487476 (+) True LOC111189292
TU38151 lncRNA downstream 100110 55542249 ~ 55564694 (+) True G28417
TU38222 lncRNA downstream 452485 55894624 ~ 55952107 (+) False G28460
XM_007253916.3 mRNA upstream 6413 55407374 ~ 55425667 (+) True parp1
XM_015607044.2 mRNA upstream 28750 55380720 ~ 55403330 (+) True LOC103023616
XM_015607051.2 mRNA upstream 120986 55308153 ~ 55311094 (+) True LOC103035140
XM_007253922.3 mRNA upstream 135630 55266087 ~ 55296450 (+) False LOC103024560
XM_022662984.1 mRNA downstream 24987 55467126 ~ 55481255 (+) False LOC103047723
XM_022662981.1 mRNA downstream 24989 55467128 ~ 55481255 (+) True LOC103047723
XM_022662985.1 mRNA downstream 24993 55467132 ~ 55481255 (+) False LOC103047723
XM_022662987.1 mRNA downstream 24995 55467134 ~ 55481255 (+) False LOC103047723
XM_022662986.1 mRNA downstream 25003 55467142 ~ 55481255 (+) False LOC103047723
TU37650 other upstream 1052774 54378241 ~ 54379306 (+) True G28072
trnas-aga_8 other upstream 1778350 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 1779142 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 1779491 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 1779863 53652135 ~ 53652217 (+) True trnal-cag_6
TU38445 other downstream 790600 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 848617 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 895041 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 1959786 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 2367856 57809995 ~ 57812488 (+) False LOC103042006

Expression Profile