RNA id: XM_007254914.3


Basic Information

Item Value
RNA id XM_007254914.3
length 2237
RNA type mRNA
GC content 0.47
exon number 3
gene id gja10
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48897216 ~ 48900234 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCAGAGAGAGGAGCTCACCTTCTTTAATGAAGAGGGGAGGATACTGGAGGTGTACCGCCAGCCTACTGTTATCTCTTCTGTAATGATGCCTCAGTGCTGAACGACATCTACCATAAACGTGCTATGTGACATCCAACATGGGAGATTGGAACCTGTTGGGAAGCATCTTGGAGGAGGTTCACGTCCACTCCACTATCGTGGGTAAAATCTGGCTGACCATCCTCTTTATCTTCCGCATGCTGATCCTCGGGGTAGCCGCTGAGGACGTGTGGGATGATGAACAGAGCGAATTTGTATGCAACACCGAGCAGCCTGGGTGCAAGAACGTCTGCTATGACCAAGCCTTTCCCATATCCCTCATCAGGTACTGGGTCCTGCAGATCATCTTCGTCTCCTCACCATCCCTGGTCTACATGGGCCATGCACTGTACCGACTGCGTGCTCTGGAAAAGGAAAGGCACAAGAAGAAAGCCCAGCTAAAGGTAGAACTGGAGGTGACAGAAGGCATCATGGACGAACACAAAAGGATCGAGAAGGAGCTTAGGAAACTGGAGGAGCAGAAGAAGGTCAGGAAAGCTCCTTTGAGAGGCTCTTTACTGCGCACATATGTGTTTCATATCTTGACCAGGTCAGTGGTGGAAGTGGGTTTTATCATAGGTCAATGTGCCCTCTATGGGATCGGATTGGCCCCTATTTACAAGTGTGAAAGAGACCCTTGCCCCAACATTGTGGACTGTTTCGTGTCCAGACCAACTGAGAAAAACATCTTCATGATCTTCATGCTGGTCATCGCTGGAGTGTCGCTCTTCTTGAACATCTTGGAGATCTTTCACCTAGGCGTCAAGAAGATCAAGCAGAGCATCTACGAAAGCAAGTACGGTGGAGACGATGAGAGCATTTGCAGGTCAAAGAAAAACTCCATGGTGCAACAGATATGCATACTCACCAATTCCTCACCGCAGAAACTGATTCATGTAACCCAGGCACCCTACATGGGGATGCCCGATGGGCAGTTAGAACCTTTGCCCCCCTATCCACCCCTCAGTAATGCTAGTGCCCCTAGACCCTCCATAGGAGCATCAAACGGTGAGGCACCACCAGCTGCATTTAATCACCAGTCCGAACAACAACGTCTCCCCAGCCAGCCTGAGATTCAGGGGCTCCGGCAGATGGGGGCCACAGAAAGACGCCATACACTGGACGGCCGAGCCCTGTCCTTCAGCAGTGAAGAGTCTGGACCCAAGGGCTCCggtccactgaaaaatgttggaCAGCAGCCTCGTGCATCCCTTCAAGCCAGCAGCTTAGAGATCCCAGCGTCCCTCCGGAACGCTGTGCGCAAACAAAGCCGGGTTAGTGCATGCAAGGATCTGAGTGAGGAGAGCGACTCTCCGGACAGCGACCACTACCCTACGGCCAGAAAAGCCAGTTTCATGTCTCGAGGGATGTCAGAGAGCAGGCTGGCCAGTCTACCAGACAGTCCAGAGTCCAAGAGTGGCTCGGAATCAGAGGCCAAACAGGTAGCTCAAGGGGAAAGTCCTGCAATGACTCCACCACCTGCTGCTGGCCGGCGCATGTCAATGAGCATGATTCTGGAACTGTCCTCCATCATGAAAAAGTGAACTCTTGGAGATCTGAGATCTGAGCATCAACCACTCTGCTGTTGCTCGATATCGCTTTGAGTTTCCTTCGCTTCAACAGCTACATTCTGCACAGTTACTGGTATATATTTTGTTCTGCTGAAACATCTTGTCCATGTTCAGTTCACCTTGCGTACAAAAGCTACTTTTAACTGAGTTACACTTTAGACCTaacgcacatacacacagtggCACTCATTTTTCTATCTGTAAGAAGACACTGACTGATTGAcaattgaatttttgcacttgACAATTATGCTCAAAGAGCTACCAATGAATATCTGtcaactgagattaaaatcatagttgaaaaaaagtacaatttcatgtttataattttaactatgtttttgtcatttcagtgtttttttactaAGCTGAATTAAGTAAAAGCATTTAAAGCTATTaattcacaatatttatttatgtatgtgggcTGTGTGCCAGTGCTATCACTTGGTGATAACACTGAATCAGCAAAGGGCTGTAATGTTTATTTGACTGCTGTTCGTGACTTTGTAAATCTAATGAAAATATCCTTTATGTCTtacctttataaacccttgtgTAGAATAAAATGCTTTTGTACTGAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0055077 gap junction hemi-channel activity molecular_function

KEGG:

id description
K07631 GJA10; gap junction alpha-10 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36446 lncRNA upstream 23000 48854512 ~ 48874216 (+) False G27130
TU36454 lncRNA upstream 23000 48854512 ~ 48874216 (+) True G27130
TU36411 lncRNA upstream 131271 48765489 ~ 48765945 (+) True G27099
TU36382 lncRNA upstream 161686 48723331 ~ 48735530 (+) True G27072
XR_002648485.1 lncRNA upstream 228652 48664884 ~ 48668564 (+) False LOC111188407
TU36485 lncRNA downstream 4422 48904656 ~ 48906548 (+) True G27150
TU36500 lncRNA downstream 218394 49118628 ~ 49121736 (+) False G27164
TU36501 lncRNA downstream 218394 49118628 ~ 49121736 (+) True G27164
TU36591 lncRNA downstream 368135 49268369 ~ 49268626 (+) True G27224
TU36593 lncRNA downstream 417228 49317462 ~ 49321378 (+) True G27225
XM_007254912.2 mRNA upstream 1237 48884002 ~ 48895979 (+) True casp8ap2
XM_007254899.2 mRNA upstream 174306 48711573 ~ 48722910 (+) True ginm1
XM_022662098.1 mRNA upstream 189267 48699613 ~ 48707949 (+) True LOC103042815
XM_007254901.3 mRNA upstream 202724 48690124 ~ 48694492 (+) True LOC103034613
XM_007254902.2 mRNA upstream 217338 48672087 ~ 48679878 (+) True LOC103035149
XM_007233468.3 mRNA downstream 1439330 50339564 ~ 50408570 (+) True moxd1
XM_007233467.3 mRNA downstream 1612719 50512953 ~ 50515944 (+) True ctgf
XM_007233462.3 mRNA downstream 1806015 50706249 ~ 50723932 (+) True lrp11
XM_007255205.3 mRNA downstream 1844649 50744883 ~ 50753961 (+) True nup43
XM_007255206.3 mRNA downstream 1857791 50758025 ~ 50768239 (+) True lats1
TU36385 other upstream 154777 48741214 ~ 48742439 (+) True G27075
TU36265 other upstream 255311 48555797 ~ 48641905 (+) False G26995
TU36292 other upstream 292311 48590949 ~ 48604905 (+) False LOC103035773
TU36264 other upstream 338476 48555797 ~ 48558740 (+) True G26995
TU36153 other upstream 614342 48280765 ~ 48282874 (+) False G26915
XR_002649725.1 other downstream 421187 49321421 ~ 49333922 (+) True LOC111191919
TU36609 other downstream 547611 49447845 ~ 49448221 (+) True G27238
TU36697 other downstream 1439476 50339710 ~ 50340077 (+) False moxd1
TU36768 other downstream 1844673 50744907 ~ 50749937 (+) False nup43
TU36770 other downstream 1869651 50769885 ~ 50772161 (+) False lyrm2

Expression Profile