RNA id: XM_015607348.2


Basic Information

Item Value
RNA id XM_015607348.2
length 5858
RNA type mRNA
GC content 0.47
exon number 34
gene id nek1
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67434969 ~ 67479787 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTAATCGCGTCAGGCTATAGAGGCGGCTTGGTTGAGCAGAGTAACAGAGCTGAATGTGGCGGTTTGGAGCTGTAGGAGCTTCTTCACTCTACAGACGGGCAGCCACAGTATGAGAGATCAAGCCAGACATGGACAAATATGAGAAGGTGAAGAAGATTGGCGAGGGCTCTTTTGGGAAAGCCATTTTGGTGAGGTCCAAGGAAGATGGCCATCAATATGTCATCAAAGAGATTGGCATCTCTAGAATGTCAAACAAAGAGAGGCAGGAGTCACGCAAAGAAGTGGCAGTCCTTGCTAACATGAGCCATCCTAACATTGTGCAATACAAGGAGTCCTTTGAAGAGGGTGGCTGCTTGTATATAGTTATGGACTACTGTGAGGGAGGTGACCTGTTCAAGAAGATCAATAATCAGAAAGGAGTTCTGTTCACTGAGGAGCAAATACTTGACTGGTTTGTGCAGATATGCCTAGCTCTCAAACATGTGCACGATCGCAAGATCTTGCACAGAGATATTAAGTCACAGAATATTTTTCTGACTAAGGATGGTACGATACAACTTGGGGACTTTGGCATTGCCAGAGTTTTAAACAGTACTGTGGAGTTGGCCAGAACCTGCATCGGCACGCCTTACTACCTTTCACCTGAGATATGTGAAAATAAACCGTACAACAACAAAAGTGATATTTGGGCCTTGGGATGTGTCCTGTATGAAATGTGCACGCTAAAGCATGCCTTTGAGGCTGGGAACATGAAGAACCTGGTATTGAAGATTATCCGTGGTTCGTACCCCCCAGTGTCCATGCACTACTCGCAGGACCTGCGTTCTCTTCTGGGACTTCTGTTCAAGCGTAACCCCCGTGAGAGACCATCCGTTTGCACAATACTGGACAAACCTTTCCTTGCCCACAGAATCCACAGGTTCCTCTCCCCACAGCTCATTGCTCAGGAATTCAGCCAGTCTCTTCTCAGACAACCCAAAACCCCTGCCCAGGGATTACCAGCCAAGCGTCCTGCCCCGGGTCCATCCCCCATCACCCCAGCTCAGAAAATCACCAAACCAGCTGCCAAATATGGAGTGCCTTTAACTGTAAAGAGACCTGCTGATGCTGGAAGAAAGGTGGCTGATTCAGCCAAAAAACAGGTGGAGAGAAAGCCTGGGATCAAACTTAAACAGGAAGGAGTGAGGAAGAAACGGATGGAactgatggagagagaaaggaaacaGAGAGAGCAGATGTTCATTCTTAAAGCTGCTCAAGTAAAAAGATTTGAGAGGGAAAAGCTTAACCGGATCAATCGTGCACGGGAGCAAGGCTGGAGACACGTTTTAAGCTCTAGTGGAGGCAGCAGCCCAGAGAGAAAGTTTTATGGTGGTGGAGGCATAAGAGGCCAGCCTGCTCCTGCACCTGGCCCCACTCCTCTACCCGGCCCTGCACTCGTCCCAGCTCCACTGCCCTGTCCAGCCCCTGCTCCCAAAGAGGGGCCAAAAGCTTCAAGAGAAGTCAGTCCAGTGAGGCCTGCAGGAGACCATGGGATTCCAAATGGTCACCCCTGCCTCCCAAAAGGGAAATGTCTTAAGAAAGAGCCACGAAGGACGAGCCTCCAGAGCGACGCAGTTTCTAAAAATGACTACGCTAACAGGTTGAGAGCTCAGATGGCTGCAGAGCGGTCCAAACAGGTAGAAGAGTTCTTGCAGCGGAAGCGAGAAGCCTTGCTTAATAAAGTCCGTGCTGAAGGTCAGCTGGGTGCCCGACAAAACCTGGCCGCCATCTTTGCAAGTCGGACTAATTCTTCTAGATGCAGGAGGCCCAGGGTCAACAAAGAGGAGGAGgaATACTTGACAAGGCTGAGGCAGATCAGGCTACAGAACTTTAATGAGCGTCAGCAGATCAAAGCACGCCTCAGAGGAGAAAAGTATGACAGTGAGTGTTCAGACAGTCAGGAGTCCAGTGAAGAGTTGGAGCTCAGGAGAAAAAAGATAGAAGCTCTGAAGGCCCAGTCAAAAACGCGTGCAGCTGTGCTGAAAGAACAACtggaaaagaaaaggagagaagcTTATGAGCGAGAAAAGAAAGCATGGGAGGATCATCTGCTTGCTCGAGGTGTGAAGGCTGCTATTGGACCTGCAAATGCAAATGCAGCTACACCTTCTCCTACTCCACCACCTCACCCTGAGCCAACCCCTCAGGATGTAGTCACTAAAGTCACACCCTCCAGCAGACCCAGCACTCCGGCCATCTCAATGACAGCAGCTCTGAAGGACGTGGGCGCGattgcTACTGTGCATACCTCCCCAAAAAAGGAGGAGCTCCCAAAAACAGAGACTGTAGATGTTCAGAGTGAGCGAAAAGAAATTCTGCGAAGGCTAAATCAGAACCTGAAGGTTCAGACTCCTGCTGAAGCCAATGAGGGTAAAGTGATGCCCCCTGATGTGCCAGAAACCACTCCTCAGACCAGCCAGTCAGTTGCAGAGGAGAGACCACAAACTAGGGGTGACAGGCGCAAATGGGATGCTGGAGAGCCACCCATTCTCTCAGTAGCCCAGTTGACTTTGGAGGACACTTGTAGCACTATGGCAGTCTCTCAGGATGTGTCTCCAGAGCAAAGTGCTCCCTCTGGTGGTGATAGGAGGAGGTGGCAGGCTGGAGATGCTCCACTATCTATGGCCCAACAAACTCTGCAGACTACCACTATTAATACAGCAGAACGAACAACTGGTGAGGTAATTCCCATGGAAGCCTGGCAGGGAGAAGGGCATAAGGAATGTGGACCTACTCCGATTTCAGAAGTTTTGAAGATACTAGAGGAGGCAGAGCTGCAGCCCATCACTCAGTGCCTGGATAACATCAGCATCTCTGACGACACACTCACCAAAAGCCATAAGACTAAAGTTGGGCCTTCAGATGTTGCTGATGGACCCATACCAGAACCTCAGCCAAGTCAAGCTGTCACAGACCAGGACCAAAAAAGCAGAACTGCCACTGCCCACGACCATGAAAACAGAGATTCCATTGGCAAGAACCAACAGCAGGTTGTCTTTGGCAAGGACCAAAAATTTCACGCTGCCAATGACCAGGATCATGAGCAACAGTCTGAAAATATGGAGGCTGTGTCCGATTCAGTGGAGGCCAGAAATCATGAACAACAGACCTGCCCAGCAGAAAAGACACAGAAGAGTCTCCCTGGTGAAAGAGAGACTGATGTGCCTTTAGGTGTAGATGAGGTAGAGTCTTTAATTCTGGAAGAGGATCCACAGCAAGTCTCCAAACCCACAGCTGCAGTGATGCATGCATGGGGACAGGACGTTGGGACAGCTCTAACTGAGAAACAGAAGACTGAGGAGAAAGTAGACCCAGAACAGGCAAAGCAGACTGAGAACAAAGTGAATGAAGAGGCTGCATTTATGAAGCTGACCTGCAGTCCTGCGCACCGCCGCACAGTGgtgctgtctctcctctctgcccAGTCTTCAGTGGAAGACTCCTCTTCTTCAGTGGCGTCCCGTTCCCGCTCTGTGTCTCCACTGCGCACCCACTGTCCTGATGACGTGCTCCTCATTGGCCTCTCTACTGGTCTCTTTGATGCCAACAATCCCAAGATGCTGAGGACATGCTCTCTGCCAGATCTCGGTAAACTCTTCACTGGCTTCACAGAACCTGATGGAGCTGCCACCCAGGATCAGAATCTGGAGATAGAGGACCTGGAAGACAAAGAGGATGAACAGTCCGAAACTGAAGAtgtGTATGAGGATGAGGACCTCAGAGAGCTCAGAGCATCAATGGAGAGATTGCTCCAGCAGCAGCGCAGTGATGACGATGAAAACGAAGacgatgatgatggtgatgacaATGGTAGCCCTCCCGATGAAGATGAACCTGACAAAAAAAGCAAGACCGGTCCAGCAGAAGAAGGCTTGAATGGCACTACAGCTAAAGTGGAGAATGGTGGTGGTGATCTTGgttgtggtgatgatgatgagagTGCCGATGTCAGTCTTGCAGAAGAGGAAGGAGAGCTGATGAGTAATGGACTAGATGTAGCAGAGGATGAAGAGCAGAGTAGCGAGAGGCAGCTCAATGAAGAGTGGCACTCGGACGatagtgaggaagaggaggagagtgaTTGTGAGCAGCAGGACAGTATCTTCAGTCGTCTGGAGGAGCTGCGCTTCCATTTGGAGCAGGCAATGGGCTTCGAGCACTTCATCCAGGCCTACAACAAGATCAAGGCCATCCACGAAGATGAAGACGAGAATATCGATATGGGCTCCAGCATGGTCCAGAACATTTTGGGAACTAAACACCAGCATCTGTATCCCAAGATCCTCCACTTGGTGATGGCAGATGGAGCATACCAAGAAGaTAATGATGAATGAGGTACTCTTGCAGGCTGCCGGCTGCTGGCAGAGTGAAGTCTTCCCCTAATGCTGTGCGTGAAGCAGTGAGAGAAAGCTTGGTCAGTTTGGAGTTTATGAATGACTGTCTTCTGTCCACGACCAGCAACTGAAGCACTACTGtgtaaaatacatgtttaagaAGAAAAGTAATATTTAACCAAAGCCTAACttcatgtgtgtgagagagaaagagagatgagagtgttgagaatgtgtgtgtgttagatgtatgcttatgtatgtatgtttctaactgttgacCGGTTGTGTGCACCAAATTCATGTTACTACAGTATTTTCTAACAGCTGAAGCCATGCTAGACCTGGGTGGCCAGTGTCTGAGGTCAGGGTCAGTATCCATCCAGCAACAGGTGCTTATGTGTGACATGAGGCAAACCTCGGCTTCATCACTCTGCACCAGTCTttacacactctacacctcctttttctactttttacaggataaaactaaacttttgTGAGAGTGCATGCAGAACTGGTTAGGACCGGTACTTTTTTCCTACTTCAGAGGCTTCACTCAAAAGACAGGATGGAGTTGCTTTAAGCTTATTTACAGCATAAATTGATGCAATGATCGTGTTCTTTAAATTGTAGTTCCACCAATGTTTCACAATTTCTGCATAACTCAGTTGTTAAAAAGAAGACAAAGTCATACAGATTGGTGCATTGTAGAGATACACATGTCTTCATTGATTTCATGGTTATATTGAAATAGTGATTGGCAAACTATGGAGTCTATTTTATTTCCCAATGCCTTGCATGTGCTTCTTCAGTGTAGAAGTCACAGAAATCTAATCATAACAGATATTATGAACAGatttctgcagtttttttttttttgtgattattcAAGTAGTCATGTGAACATCATGCTCCGATTTCTTGTCGCTGGATTTTAGCTCGGATTTTAGCTCACATTTCTCAGTCCTTGTATCTGAATACTCTGAATGAATATTGTTTGATTTTGTATtcacaatcatttattaaacattttagggGTTTAGCCATTTACACATACCTTTAACCCCAAGATGATCTGGTTCCATTCATCACCACTGTGATAAAACAGTTTTGCCATTAAAAGCTCTTATAGACCTGCATATTTCCACTTTAAACCATTCTGAACgactttgtttacattttaaccATTGACCTTGATACAGTGGAATCCCCCTTTAGGTGTTAATGGAATGTGCATATATCCCCTGTGCATGCATTATACACACCTTCTGCTGTTGCACCTTTTCGTGATGTAATGGATTGATGTAATTGTACTGCTCTGCTGTGGTACATTCAAAATGCAAGTGTTGTACAGATTATTgtcaaatgatttaaaaaagagcAGAGGAATGGGAAAGATGATATTTATGTGCTGTCTGATATAGACACAAAACCTTTTATCTTTGTATTgataaataaaccttttttttaatgtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42135 lncRNA downstream 118796 67315844 ~ 67316173 (-) True G31385
TU42091 lncRNA downstream 230720 67203958 ~ 67204249 (-) True G31352
TU42067 lncRNA downstream 312029 67122629 ~ 67122940 (-) True G31329
TU42041 lncRNA downstream 337427 67089429 ~ 67097542 (-) True G31303
TU42054 lncRNA downstream 376535 67058059 ~ 67058434 (-) True G31316
TU42279 lncRNA upstream 174363 67654150 ~ 67654617 (-) True G31480
TU42282 lncRNA upstream 177788 67657575 ~ 67659085 (-) True G31482
XR_002649744.1 lncRNA upstream 205579 67685366 ~ 67686312 (-) True LOC111191948
TU42363 lncRNA upstream 353636 67833423 ~ 67835048 (-) True G31546
TU42333 lncRNA upstream 363497 67843284 ~ 67844523 (-) True G31523
XM_007255229.3 mRNA downstream 19077 67352889 ~ 67415892 (-) False sh3rf1
XM_007255228.3 mRNA downstream 19077 67352889 ~ 67415892 (-) True sh3rf1
XM_022665145.1 mRNA downstream 119218 67214548 ~ 67315751 (-) True LOC103032908
XM_022665136.1 mRNA downstream 266893 67156457 ~ 67168076 (-) False LOC103026745
XM_022665128.1 mRNA downstream 266893 67156457 ~ 67168076 (-) True LOC103026745
XM_007238290.3 mRNA upstream 105324 67585111 ~ 67606176 (-) True LOC103030302
XM_007240731.2 mRNA upstream 372770 67852557 ~ 67853773 (-) True LOC103045211
XM_007240732.3 mRNA upstream 375819 67855606 ~ 67862313 (-) False arpc5
XM_007240734.3 mRNA upstream 452773 67932560 ~ 67940713 (-) True LOC103046133
XM_007240735.3 mRNA upstream 488349 67968136 ~ 67972358 (-) True LOC103046427
TU42210 other downstream 2545 67423872 ~ 67432424 (-) True G31424
TU42030 other downstream 543350 66862465 ~ 66891619 (-) False LOC103031958
trnad-guc_8 other downstream 2337296 65097602 ~ 65097673 (-) True trnad-guc_8
trnad-guc_7 other downstream 2341820 65093078 ~ 65093149 (-) True trnad-guc_7
trnad-guc_3 other downstream 2362156 65072742 ~ 65072813 (-) True trnad-guc_3
TU42226 other upstream 23962 67503749 ~ 67528337 (-) True G31437
trnai-aau other upstream 177678 67657465 ~ 67657537 (-) True trnai-aau
trnai-aau_1 other upstream 177839 67657626 ~ 67657698 (-) True trnai-aau_1
trnai-aau_2 other upstream 178394 67658181 ~ 67658253 (-) True trnai-aau_2
trnat-agu_1 other upstream 178792 67658579 ~ 67658651 (-) True trnat-agu_1

Expression Profile