RNA id: XM_007255236.3


Basic Information

Item Value
RNA id XM_007255236.3
length 2477
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC103028999
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67515932 ~ 67528356 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATAAAGCAGCTCGTTGGTACAGTGAAAACCCTGGTTTCCTGCAGCTGCTATGCTTCGGTCAGGGGGCTGTGTGGGTTTTCTGAGCTGTCCGGTGTGTCTGGAGCGTCTCCGGGATCCGGTAACGATACCGTGTGGTCACAGTTACTGTAAGAGGTGTATCTCTCAGTGCTGGGATGAGGAGCAGCTCCAGAAGAAGGCGGTGAGCTGCCCGCAGTGCAGGGGCTGCTTCCCCGCGAGGCCTGCCCTCAACCGGAGCACCGTGCTGTCTGAAGTGCTGGACAGTGTGGAGCCCAGCCCCGCGGAGCCTCGGGGCTCCAGCCCGGGCTCAGCCTCACTCGGGGGGGAGTGTAACTTCTGCAGCGGAGCGGTGAAGAGCAGGGCCGTGAAGTCCTGCCTCACCTGCGTGGCCTCCTTCTGTGAGACACACCTCAGACCTCACCTCCAGTTCCCCGTCCTCCAGAGACACGCGCTGGTAGAAGCCACTTCAGGCCTGCAGGAGATGATCTGCTCCCGACACAACAAGCTCCTGGAGGTCTTCTGTGTCCAGGACAAGCGCTGTATCTGCCTGCTGTGCGCTATGGACGAGCACAGTGGCCACACCACAGTCTCTGCTGCTAAAGAGTGGTGCAGACTACAGCAGAAACCACTGCAAAAGATCCAAGAAAGATTTCATGCACTAATACAGTGTCGGGAAAAAGAGTTGCAGGCACTTAATGAGGCTGTGAAGGCTTACTCCACTTCAGCACAGGTGGCCATGGACTTAAGTAAGGAGTTCCTGGCTGAGATAACTAAGTACATGGAGAAGAACCTGTCTCTGTTCTGTTACATGATCCAATACTATGAGAAGAAAGAGTTGCACCAAACACACATGCTCCAGAAGAAGCTGGAGCAGGTGATTGCTCATCTTAAGCGGAGTGACGCTGAATGCAGTCAGCTGAAACACACTGATGACCCCATACTCTGCCTGCAGAAATTCCTTTCTCTCACTGCAGTTGCTGAGTCTGAGGTCCCCAGAAGCAACCCTGTGAGCAACAATCACTCATTTCTGAGTGCCAGTCATCTTTTATTAGGGCTGAAGGAGCAGATGAAGAAACTCTTTGATGAGGAAATGATAGAGATGAACACTGttaaacaaattaatataatCCTGCCACCCAAACCCAAGACCAGACTGGAGTTCAAAAAGCattactgCCAGCTGAAGCTGTCACCCGACTCATGTAACTCGTCTCTACAGCTGTCTGAAGAGAACCGTAAGGTTCAGTTCCGTTCATATGGAACATATTCCACTGCTGAGCCTCATGCAGACAGATTTATTCATACAAATCAAGTTCTCTGTGATGGTGCCGTAAGAGGGTGCTGTTACTGGGAGGTTAAGTGGCAGGACAAGGTCAATATCGCTCTGTCTTATGGAAGTATAGTCAGGAATGCATGTGGTGACAGTAGCAAGTTTGGATATAACGATCAGTCTTGGAGCTTGGAATGTGATCGTTATTTTTGCAAATTCCGACACAACAGCATTGTCACAGATGTCTCCACATATCCACCAGAACATATAGGAGTTTATCTAGATGAAGATGCAGGTGTATTGGCTTTCTATCGTGTTTGTTCCCAAGGCCCTATGACACTGCTGTACAAAACACAGGCCGAGTTCACCAAACCCCTTTATCCTGGCTTTACACTCGATTCCTTTTTGGGTTCCTCATCTGTGACTCTGTGCTAGAAACCACTGTGGGCTATGGGTTGCTTATAATACTGcataatgttttgtttatgcCATGTGAGGAAAGTCCTATCAAATAGTTTGGTGGATAatggtttttgagttaaagCGTTTGCTTGCATACCCATGTCAGTTTCCTAGGCTTGATCCCTTTCTCTGAAACTGACTTAAATCAGGCGATTGTGTTCCTTCACACAACTGaacttattatttatgtttcatTACATTATTTACTTTAAGAGTgtcagtagtagtagcaggagTCACTTATATGACAAAAGAAAATCACACAACTTGTAGACATATTGTTAATGTATGTTCGGTTTCTGTGGTTCTGTAAGTTTTAACAAGTTAGTGCGgttctgaacacttaaaactctGAACTGAAATAAATCTAGTTAAACAGGACTAAGTATACGTTCCAACTTTTGTGCCATTTCAATGTTCTGCAAGTACTGGCAGTATGCTATTGAAAGAGTTAATTAGTATAATGCTATACAAATGCTGCACTTTTTGGGGCACCCCTGGGCAAAATACTTGTTACCTTGAACAGCTAACTAACCAGATGGTGTGCTGGTGATTTTTAAATgccattaaacatttaaatgccaCTGTATAAGGTTAAAATCTAGTGATGTTTAGTTTGacatgttttataaagaagtgATTCATTGtttagttaacttttttttcacttactTGTTGATCATGTGTGtataaccaaataaataaaagtaaatactaTGCATATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42195 lncRNA upstream 9060 67492744 ~ 67506872 (+) False LOC103027733
TU42196 lncRNA upstream 21947 67492744 ~ 67493985 (+) False LOC103027733
TU42112 lncRNA upstream 161245 67350795 ~ 67354687 (+) True G31370
TU42000 lncRNA upstream 412449 67100372 ~ 67103483 (+) True G31278
TU41940 lncRNA upstream 556350 66823404 ~ 66959582 (+) False G31234
TU42278 lncRNA downstream 125793 67654149 ~ 67654605 (+) True G31479
TU42320 lncRNA downstream 332277 67860633 ~ 67862273 (+) True G31512
TU42411 lncRNA downstream 459077 67987433 ~ 67987677 (+) True G31583
TU42428 lncRNA downstream 546841 68075197 ~ 68075581 (+) True G31595
TU42429 lncRNA downstream 568459 68096815 ~ 68097060 (+) True G31596
XM_022678471.1 mRNA upstream 9034 67483335 ~ 67506898 (+) True LOC103027733
XM_022678468.1 mRNA upstream 319505 67195516 ~ 67196427 (+) True LOC111194389
XM_022678463.1 mRNA upstream 321880 67193228 ~ 67194052 (+) True LOC111194388
XM_007255223.3 mRNA upstream 399751 67113196 ~ 67116181 (+) True LOC103025937
XM_022678459.1 mRNA upstream 415629 67097963 ~ 67100303 (+) True LOC111194387
XM_022665221.1 mRNA downstream 5459 67533815 ~ 67579081 (+) False swt1
XM_022665212.1 mRNA downstream 5460 67533816 ~ 67579081 (+) True swt1
XM_022665227.1 mRNA downstream 5460 67533816 ~ 67579081 (+) False swt1
XM_022678477.1 mRNA downstream 163085 67691441 ~ 67844634 (+) True hmcn1
XM_022665254.1 mRNA downstream 350184 67878540 ~ 67929915 (+) True LOC103045824
TU42187 other upstream 18235 67497203 ~ 67497697 (+) True G31407
TU42094 other upstream 300746 67214305 ~ 67215186 (+) True G31355
XR_002649741.1 other upstream 1666170 65849127 ~ 65849762 (+) True LOC111191945
TU41629 other upstream 1678567 65828781 ~ 65837365 (+) True G31000
trnad-guc_10 other upstream 2416570 65099291 ~ 65099362 (+) True trnad-guc_10
TU42315 other downstream 303464 67831820 ~ 67833215 (+) False hmcn1
TU42422 other downstream 491684 68020040 ~ 68022934 (+) False LOC103035359
TU42555 other downstream 1298287 68826643 ~ 68827572 (+) True G31702
TU42576 other downstream 1616662 69145018 ~ 69161883 (+) True G31718
TU42854 other downstream 2668569 70196925 ~ 70199742 (+) True G31939

Expression Profile