RNA id: XM_007255370.3


Basic Information

Item Value
RNA id XM_007255370.3
length 4826
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC103038902
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54665408 ~ 54689752 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCCTGCTGAAAACGGACATCCTGCTGTGTTTAGAGGAGGAGGATCAGCGGTATTTACTCCTCCGCTGAAGttcttcctccttctcctctgacTGTGATAGACTGAGCTTAAGGGACTCAGAGAGCCGGGCTGTACAGACTGAGGGCTGCGGGGTCGCTGAACCGAGGctctgcagtgctgctggtggtgTTGTTGTGGGGGTGCTCGGGTATCCGCTCGGTGTTAGACGGTCTACAGGGCGGGGATGTCGGCGGGCGCCGCGCAGGGAGCCGCGCTCGGAGCTCCGGCCTCGGGCATGTCGATGTTCCGCTGGCTGGAGGTTCTGGAGAAGGAGTTCGACAAGGCGTTCGTGGACGTGGATCTGCTGCTGGGCGAGATCGACCCGGACCAGGCCGACATCACCTATGAAGGCCGCCAGAAGATgaccagcctcagctcctgcttCGCGCAGCTCTGCCACAAAGCGCAGACCGTCTTCCAGCTCAACCACAAACTGGAGGCTCAGCTGGTGGATCTAAAGTCAGAGCTGACTGATGTGCAGGCGGAGAAGACCGTGGTGGAGAAGGAGGTCCATGAGCAGCTGCTCCAGCTTCATACCCTCCAGCTGCAGCTCCACGCCAAAGCTGGCCAGACCGTGGACTCCAGCTCCATTAAAGACAGGATGCCTGTTCCCTCAGTGGAGGAGATGGAGAAGGAACTGGAGGCCAGTAAGAAAGAGAAGGTGAAAGAGGTGAAGCTGGAGGCAGAGGTCAGGATGCTTAAAAAAGAGAACGAGGCCCTCCGCAGGCACATCGCCGTACTGCAGGCGGAGGTGTACGGCGCCAGACTGGCAGCCAAGTACCTGGACAAAGAGCTGGCTGGGAGAGTTCAACAGATTCAGCTGTTGGGCCGAGACATGAAGGGACCAGCTCACGATAAACTGTGGAACCAGCTGGAGGCTGAGATCCATCTACATCGCCACAAGACAGTCATCCGGGCCTGCAGAGGCCGCAATGATCCAAAGAAGCCCTTACCATCTCCAGCTGGACATGACCCAGATTCTCTGAAAAAGACTCAAGGAGTTGGTCCCATACGGAAAGTGGTTCTGGCCAAAGAGGATCATGAGGGTCTTGGAATCTCAATCACAGGGGGTAAAGAGCATGGTGTTCCCATCCTGATCTCTGAAATCCACCCTGCTCAGCCTGCAGAGCGCTGTGGGGGGCTGCACGTGGGAGATGCCATCTTGGCAGTCAACAACATCAATCTGAGAGATGCCAAGCACAAGGAAGCAGTCACCATCCTTTCTCAGCAGAGAGGGGAGATTGAGTTTGAAGTGGTGTACGTGGCTCCGGAGGTGGACTCGGATGATGAAAATGTGGAGTATGAAGATGACAGCGGCCATCGCTACCGCCTCTACCTGGACGAGCTGGAGGATGCCTCAGCCTCTAGTCATGGAAATGGTCCTGCAGAGTCCGCCACACTACAGGCTGTGGAGAAGCACCTGAGGGCTGATGGAGGTGAGAACGGAGATACAGGAATCTCCAGCGAGAGTCCTTCAGAGGAGACGCCCTCCAAGTCAGCTGAATCTCCAGAGAGCTCCTCGTAAAGAGATGACTGCGAGCCaagggagaaaaaagagatCGAAATAGAGACTACCTGTGTATGATATGTAACATACGAGATGCTTTTTGTACCATATGGAGAAGAGACCATTTCAGAGTCCACTGGAGATTGCATGAAGACACAGAGAGGAAATGGGGGGCTGTTTCTCACATGGTGATGGAAGAGGGGCACAGGAACACTTCACGTCACAGTCTGTGGTTAGTTAAGAAAGAAAGTTGGGAATGTGCTGTGGTTGGTAGATGGTGTAAGAGATGTAAGGCTGCATGTTACACCTAAAAATAATGGttctttaaatgcttttattcaGCAGTGCCACAGAAAAAACCCTGTTTCCATAAAGAGAGATATGTGAGTGTAAAGACCCTTTAAAGTTGTAAAGAATCTTTACGTGATGTAAGATCCACATGTCTTGATTTATGTGACTCTATGTGTTCTATGGCATTGCTTAAGGAAACCTTTTAAGAACCATTATTTTAACTGTACGAGCAAAGATTCCATATTGTGACTACTTGTGATATATCTCACAATATACTACAAACACATTAGCCGACCCCTGTAACATAAAAATCAATCAGCCTGCTTAGTTTTGACCAAAATTATTTGTTTGTGATGCCTCAAAACActgtctgtgattggtcaggatgcTCACAGCATGCATTTGCATACTGAAGGTCTAGCTAGGTGGGTTCACAAGCTTCTGTATGAGCAGTAAACAGATTCTGAGACACATAAACCTTTCttatggtgtgtgtatatatatatatatatatatagtgcagcCATAAAGAGATGAAGTAGTGGGTGGTTTTCTTATTTTCCATACCTGCTGGTAAAATGTACTGCTGTGGTGGTCTAGAATCTGTTTGCTCCTATTTGAATAGTTTGAAACTAGATGGATTTAGCAACATGTTGATGTCAGCCTACAGCCTATAACCTTAgacaaacataaataatatgtaaaacatgtcttttttttttttttttttttttttgtctagtcTGACCTCCTTTGAGGTCTGTTCTTcaaagccaatgaaaacctaatGACTTCACCTCTTCTTATGGGTTGAGGGATTTTGTCCTGATTCAGccgttttaaatacacttatacCATAAAGTGCGTAATAGACATCACTGTCAGTGTTTcatccagttttttttattttttgcattacgTCTGGTTTCAGTAAGTATCTGCATCACAGATGGACCGGGTTTGTGGGCTTCTGTTGGTTTAAAGGACAAGTTCAATAGCATATAAAAGTATGCAGGTTAGTAATATGATGGCGTTTGCTTGgataagtatttaaaataagaaCATATCAGGACAGTTTATGCACAGTATGTAAAGATTCTAAGAATGCAACACAAAGAAAAACTGGTAATAATAGCTAGGTGGATAAAATTGTTTGGTAAAAATAGTGAAACTGATTACTCCTTAGTCTGTACACTTAGCTTAGCTGCCTGTGAAAGGGAAATTGTATGTGAGAGGTGTTTGTGGTCTCAAGGTCAAGCCAAGAGTTTACTTTTTTGACGAAGCAGGACTTTAACTTTAAGTACATAAACTGGATTACAACTTTGTAATACTCAAACCTAGACCCAGTCTTCTGCGTCTGTAGCCAATATTTATTTACTCTTTACTGAAGTAATGCCACCCTTGAGGGCACAGAAAATTAGTAAATTAGTGTAAATTAGTTGTTTACTGGAAAAACTTAGAAGACTTAAAGTCAACATGGATTTTTCCTGTTGCGCCAAATCCAGGAAGATAAACGTTTCTATAATACAATTGACTTTGTTATAGATGCCGTTGATTAGGATAAGCAGGGCTGTCTGGAACAGCTTTTTTATATCAAAAGGTGACAAGTTCTTGTTGTCATTTCCAAACAAGTGCCTGTGTACTTGTTCTCAAAATTACCCATAACAATAATGACCAATAATATATACACCATATTTACTGCAGTTCAAAATATATCCGGTAGGTGACAATGATAAATCAGTAGCCAGTGATGGTGcaaattaactgaaatattcTACCAACCGTTGAATGAtctgtaaaatgaataaacagtaatGGTATAAGTAACAAAGAAGAACAAAGTCATGTATGGCCAGCAGCTCATATTAGCCCAGCTCTtaattaaatacacaaaataactaTTCATTTCTAAGTGAATTAATATGAATTCCCTGGCTTgaatttattatacatttaaaccagctttaatttatttatttttttaacatattccctagattaattattactttaactTTCCTTTTCTAGTGCTTTCTCtggaaatattgtgatacatatgTCCAAGATGCCTCAAGTTTAAGGTTTCTTGAGTTATATTTGTTGCTCTCTTCTCTTCCCACTAACTCTTTGTGCCGGCTCTCTTTTTAGTGTCTCCTAAACGAAACTTTCCAATACCTGAAAGCATAGACTGCAGTGATGTATGTGAAAATTCATATCCAGATGACTATAAACCTAAGAGTACATCTCTACATCTTTATCTGTATATCAGACTTTCATCTTCATCTGTGACTACCCCACCGACTGCTGCGTATTTAGGTAGAATTTTTAGAGAAGGATTTTTAGCTAAATAGCAATAAAGAAAAACTCTGATCCAGTATTTGACCTGCTCGCTGCTGTGAGTTCTTTTTCTGAGGTGTAACTTCATCTGTACACAAAgcctgtatgtatgtgtgtctgtgtttctttAGCGAACCGAATCCAGTTCCTGTAGGTTGACACTGAAATTTGTGAACTTGAGCAAGAAAGAAGCTTCTCCGCTCCTCAAGGCCCTTGTTTGGGGCCTTGGGTGTTTGGGTGTTGGCTCACAGCACATCTTGTCCGCACATGTGGGTCTGTGTGGGGTGGATGGGCTTTGTGAAAAGCTCTTGGGCAGTTACTGATGTGTTGGgcggtgtgtgtggtgtaggtAAGGACCACAAGAGAGCAAAATGCATGCCACAAGAAACACCAGCAAGCAGAGAGAAGCCTGAAGGAACAAATGCTCTCGTAGGTTTTAACCttacctgtttttcatatggtttgtgtgtttttttttttttttttttccttcttatttttttttttttttcttttccctctAGTGTCACATGATGTGTATTTCTGCAATCTAAAGAGATTTGGTATAAATGTCTTATATCTGTAGTTACTGTATAACAATAtttgaataaacttaaatttaTTTGCCCA

Function

GO: NA

KEGG:

id description
K24054 GOPC; golgi-associated PDZ and coiled-coil motif-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37801 lncRNA upstream 21980 54595474 ~ 54643428 (+) False G28197
TU37800 lncRNA upstream 21980 54642032 ~ 54643428 (+) True G28197
TU37799 lncRNA upstream 126945 54537768 ~ 54538463 (+) True G28196
TU37797 lncRNA upstream 127648 54534929 ~ 54537760 (+) True G28194
TU37796 lncRNA upstream 131917 54529793 ~ 54533491 (+) True G28193
TU37826 lncRNA downstream 5443 54695195 ~ 54698365 (+) True G28212
TU37986 lncRNA downstream 472738 55162490 ~ 55162956 (+) True G28300
TU37988 lncRNA downstream 474042 55163794 ~ 55165019 (+) True G28302
TU38042 lncRNA downstream 690852 55380604 ~ 55390008 (+) False LOC103023616
TU38058 lncRNA downstream 769241 55458993 ~ 55459300 (+) True G28361
XM_022662784.1 mRNA upstream 209884 54433723 ~ 54455524 (+) True LOC103031746
XM_022662787.1 mRNA upstream 209884 54433723 ~ 54455524 (+) False LOC103031746
XM_022662778.1 mRNA upstream 265517 54267384 ~ 54399891 (+) True scara5
XM_022662750.1 mRNA upstream 615992 53963562 ~ 54049416 (+) False epb41l2
XM_022662845.1 mRNA downstream 137872 54827624 ~ 54843995 (+) True tdrd15
XM_022662846.1 mRNA downstream 155500 54845252 ~ 54880390 (+) True igf2r
XM_015607401.2 mRNA downstream 321830 55011582 ~ 55155449 (+) False afdn
XM_015607395.2 mRNA downstream 321831 55011583 ~ 55155449 (+) True afdn
XM_007255348.3 mRNA downstream 321831 55011583 ~ 55155449 (+) False afdn
TU37650 other upstream 286102 54378241 ~ 54379306 (+) True G28072
trnas-aga_8 other upstream 1011678 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 1012470 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 1012819 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 1013191 53652135 ~ 53652217 (+) True trnal-cag_6
TU38445 other downstream 1542987 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 1601004 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 1647428 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 2712173 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 3120243 57809995 ~ 57812488 (+) False LOC103042006

Expression Profile