RNA id: XM_007255378.3


Basic Information

Item Value
RNA id XM_007255378.3
length 4602
RNA type mRNA
GC content 0.48
exon number 14
gene id cep85l
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48232270 ~ 48311540 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACTTCCTCCCGCTGCTTCTGCATTATGCGCCTTTCTGATGAAGAAGCACAATTGTTCGAGCACATCCTCTCCTGGATGGGTCCCAGGCTGTGATTCAGCCTGGCAGGGCTCTTCCTCCACCACTACCAGCAGTAATCGTGGAAGACGTCACAGTGCCGCTTCGGACAGTGGTGACACGGGCATAGGCACATCCTGCTCTGACAGCGTGGAGGATCACTCTAGCTCGAGTGGGACGCTGTCCTTTCAACCGCTCCGCTCTCAGGGCCCCATCCCCACGGCCCACGTCATGCCCTCCCCCTCCGCCTCCCGGCTCAGCACCCCTTCAGCCCCCAGCAGCCCCTGGAGCAGCTGCCAGCTTCCCTCGCCCCTCGACAGCCCACTGGACATGAAGGACCCCCGACCTGTCCGTCGCTGGTCTTCTCTCACCCGACTGAGTGGTCAGGAAAAAAGCAGTCCGTCCGGCAGAGCCTCCTACCGTGCTGACCCTCACGGCTCCTTGGACCGGGGCCTGCTCTACGGGTACCGGCAACAGGAACCCCTGAGCACAGACGCTCTACTAACCCATGGCCTGCATAAACTGTCCTCCACCAATCCAGAGCTACCACGCTACAGGTATGAGCTGGGCAGCAGCACCACTTTTGCCAGGACGGACTCGTCCTGCTCCTCTCCACTCAAGCCTAGCACGTTGGACCTGAGCTACAGTGCCTTACCAGAGAGCAAACCTACCACTTCAGGCTCCCTTTTGCTTCCCAGTCCGAGAGGCTCCTCACTGGGGCACCAGTCGGTAGGCGGTTCACCCATCCAGCCAGCTGTGCGCACACAGATGTGGCTGAGTGAGCAAATGGAGTACAGGCCAGGACCTGAGGGCTGTGGACTCAATGCCTGGcaacaggagcagcagcagcagcagcagcgtgacAGACTGAGGCAGGAGGCTGAGCTCACACAGATGCTGGGTGGTACGGGTCTCCCTGTGAACACTCTGGTCAAGATAAAGGAGGGGCtactgagacagagagaactGGAGATTGACAGGCAAAAGCAGCAAATTCTGCAGCTTCATGCCAGAATCAGGGAAAATGAGTTAAGGGCACAGCAGTTTCTCCAGAACCAGAGGGGGCGCTGTGAAGATCCTTATCTGCTTAAAACAAAGGAGTGCCAGTACGACGGGCCTGTATCTGGTCACAGTCCGCAGCCTCCGCTGACCGAGCGGAACACTCTGTGCTGTGAGAACGGTGAACTGGGCCGCAAACTGGCCACTGCTGAGTTGGAAGTCATCCATCTAAACGAGTTCCTCAAACAGAACACACAGAAGTACACAGAGGACATAAAGAAACTAGAGGAGAAGATGAAGACGCGTGACCGCTACATCAGCAGTCTGAAGAAGAAATGCCAGAGAGAGCAGGAGCAGAACCAGGAGAAGCAGCAGCGCATCGAGACTCTGGAGAAATACCTGGCTGACTTGCCCTCGCTGGACGAGGTGCAGACACAGGCCCAGCAgttgGAGGAGGTGCAGGGTAAGGAAAAGGCACTGCTGGACACAGTGGCTCAGCTGGAGCGGAGCTTAGAGGAGAGCCGATCCACGCTGCAGGAGAAAGACGTGCTCATTGAGAGCCAGTGCAAGAGAGAAAAGGAACTGGTGGCTGCTGTTCAAAGTTTGCAAGAAAAGGTAGAGAAGTGTCTGGAGGACGGAGTGCGGTTGCCAATGCTGGACCTCAAGCAGCTGGAGAGGGAGAACACACGTCTGCTAGAACAGCAGAGTCAAAATAGCAAGCTGATCGACAGCCAGAAGCAGCAGATTGATAAGCTCACTCTGGAATTGACGgcacTGGAGAAGAGGCTGCAGAAGGAGAAGGGGATCACGCAGGAACTCCACTTGCAGCtgtctgagagagaggaggaccTGGAGTTGCTCTCCAAAAGCAAACACCAGAACCAAAGACAGGTGGATGATGGAGCGCTGCGGCCGTCACCGGGCCCCACGGTGCAGGAGGCGGGGCCTCTGCTGAAGGAGATGTCTCTGTGTCTGCTGGATTTAAAGGCTCTCTGCAGCATCCTCACGCAGAGAGCCCAGGGCAAAGAGCCCAACTTGGCACTGCTGCTGGGCATCAAATcTATGAGCTGCTCAGGTGAAGAAGGCGAGAAGCCGCCGGTGGAGGACAGCTTGCGGGCCAAGCTGCTGGAAGTGTGCCAGCTAAGGAAGGACATTGACGATCTGCGAACCATCATTTCCGACCGCTACGCACAGGACATGGGGGAGAACTGCGTGACGCAGTGAAGCACCCCCTACAGTCCAGCCTGCTTTCCCAGGCCTCCCGTTCCCAACCACTGAGGACTAGAAGACAACAAAgggaaaaatattaataataataataataataataataataataataataataaaagagaatcaGAGGTCTCTGACTACTGAATGTTGGACCAAGCTGTGAATCTAGTTTACGTGGGAGTCTTTGTAGCTTTGTGTTTAAACGCTCATCTCCACTTCAGATTGTTGAAGATGGTCGTATATGAACTCTTTGAAAGTTTTTGATGTATATTTATTGGGATCATGGATCACCTTCTTAGGTATTACAGTCAGTGGACTTTGAGGATTCTGTCCAGATGTTCAGAAACAATGCACAGCAATGCAGTAGGAACCACAGAAATATATGTTCTCTAATGAGCCCTCCTTCAGCTGTTACTGTAAGGTGTTAGTGGAACGGTTAATGCAGCTATTTAAGTGCCTTGTCATAAGATGTTAATGATCCAGTTTGTTTCTTCTGTTGTATCACAAACCCTGTCCAACGGTGACCAAAAGACAAGGTCCATGTTCTTCATCAACTGCTGGTTGCAGGTCAACACTACGGCAGATTCACTTCCCACATGTTTAACCGTCTTCCACTCAGCACCTTGTATTCTGACTGTGATGttgctctgtgtctctctctgtgtgttacTTCTAAACTGTTCTTCTAGTAGGACTTTAGGACTACAGTACTAATAGCAGCAATCCAGGCTCCTGAAAAGTTCCACAACCAGGAAGGAGGGTGCAGTTGGTTGGGTGGTTGGATGGTTGTTTGGTTGCGGGAAATTCACAAAAAGGGCCAACCAGATTTAGGAGCAGGTTTGTTGATTCAGATTAAAAACTGTACTAGATTTCAGGTAAATCGCGTCAGGAATTGTTTTTTAGTTCtagtgacaaaaaaaatttaatcaggaaatactaCTCAGCAGTTCCTGAGCTAGTGATGAGCTCAATTACTGTTCTGGTCCTGAGGATGTTTTTCCTCATGAAGCTCCAAAGACGAGGAGGAGAAACACAGatgtccagttttttttttcccctccctcacAGAACGGGAAAAACGCACAAAGGAGTTTTATAAACACCATAAGATAAGAATACATAGGATTTACTATAAAATAACCtagtaaaaaaactaaaaaccatCAATGCAAAAATGATTCTCAGGTATTTTCTATAGACAGTGTTAAGACTCCACAGTTAAAAGTGGAATTGcattgcttttattattttaaaaagggaTTTTAACTCTCTGAGTTGTCTGGTCTTAAGAGTTGGATCTTTTCATGTTGGCCCCATATAAAATTCTTTTTGTCTGTAATATAAGAAAAGTTCAGCGACTTGGTCATGACAATCTATGCACAGGCATTTGCAAGACGataaatgtttgtaaaatatttattgaaacaatgtATTCAGCTGATGTATCTCTAGATAGCAATATAACtgttatattcagtatatttttgCATGGGACTTAAACTAGGATATTTGTCAGTGTGTGCTAGGATTGTCCATCACGTGCATGTCTGTGTTCTACCGCTCTTCTTAAACACTGTCCTGATGGATGGAACCTGTACAGAATGGATGAGATCACTGAAGCTGGttttgatacacacacacagtgctatGCAACCTCGTATTTACCAGCATTCAGTACTATAGAGTTAAGCAGACATCGTTTTTACTGTGCCTTTATAAATCTATGCAGCAAAGTCAGAATCCtgtgtttttaaagtatatGTATGTCAGCAAGACTTCCATGGTTGGCATGACTTTGATAATGAAAAGGCAGAAGCCGTGTTGGAACCTGCTGAAAGGACGAAACCTCCACACATTCTGATGAAAGGCATGCAGTCGTGTTAAGCCATAGCCACAAACAATGCATATTTCTACTCAGGCAAAGTGAGGCTGAAACCTGACGAGGAATGTTCTTGCTGCAGCTCCTGGTTTATACTTTACCAGGCGCTATTAAAGTGAACAGGCGTGCGGAGTGGTGTACAGAGATGGAGTGATTGTATTGCAGACGTGAGCAAAGGGAAGTGCACGGTTGTCATGGCCGACTCTGAACTCACTGTGGGCTGAAGGCCACTGGCTGGCTTTACTGAACGGTATAGACCTTCTCACTGGGTTAAACTtagtttaagcttttattttttcagctaGACTTTACATATGCCAAAGCTCTATTTATGTACCAACttcaaaattaaagtatttttccattttgtacaaaattaaaatgaaaaaaaaaaaaaaaagtttgctcTTCATTTGTACAgagaatgaataaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36145 lncRNA upstream 19288 48212137 ~ 48212982 (+) True G26910
TU36117 lncRNA upstream 300319 47908691 ~ 47931951 (+) True G26890
TU36098 lncRNA upstream 479404 47752634 ~ 47752866 (+) True G26872
TU36093 lncRNA upstream 534690 47697342 ~ 47697580 (+) True G26867
TU36090 lncRNA upstream 550029 47681924 ~ 47682241 (+) True G26864
TU36251 lncRNA downstream 107292 48418832 ~ 48450456 (+) True G26982
TU36262 lncRNA downstream 240693 48552233 ~ 48552667 (+) True G26993
TU36263 lncRNA downstream 241309 48552849 ~ 48553157 (+) True G26994
TU36266 lncRNA downstream 251064 48562604 ~ 48567294 (+) True G26996
TU36304 lncRNA downstream 322904 48634444 ~ 48634842 (+) True G27008
XM_022678324.1 mRNA upstream 12926 48200936 ~ 48219344 (+) True mcm9
XM_007255382.3 mRNA upstream 35731 47941106 ~ 48196539 (+) False fam184a
XM_007255380.3 mRNA upstream 35769 47940437 ~ 48196501 (+) True fam184a
XM_022668066.1 mRNA upstream 305868 47918346 ~ 47926402 (+) True LOC103032605
XM_022662004.1 mRNA upstream 641854 47393247 ~ 47590416 (+) True man1a1
XM_022662058.1 mRNA downstream 229995 48541535 ~ 48565601 (+) True amd1
XM_022678326.1 mRNA downstream 267263 48578803 ~ 48618075 (+) True LOC103035773
XM_022678336.1 mRNA downstream 309190 48620730 ~ 48621912 (+) True LOC111194359
XM_022662038.1 mRNA downstream 338148 48649688 ~ 48654677 (+) True LOC103035465
XM_022662030.1 mRNA downstream 338156 48649696 ~ 48654677 (+) False LOC103035465
TU35893 other upstream 1701883 46528395 ~ 46530387 (+) False fau
TU34777 other upstream 4737955 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 4807364 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 4810224 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 4868826 43360469 ~ 43363444 (+) True rps29
TU36264 other downstream 244257 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 244257 48555797 ~ 48641905 (+) False G26995
TU36292 other downstream 279409 48590949 ~ 48604905 (+) False LOC103035773
TU36385 other downstream 429674 48741214 ~ 48742439 (+) True G27075
XR_002649725.1 other downstream 1009881 49321421 ~ 49333922 (+) True LOC111191919

Expression Profile