RNA id: XM_007255447.3


Basic Information

Item Value
RNA id XM_007255447.3
length 4588
RNA type mRNA
GC content 0.43
exon number 31
gene id xrn2
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 33625486 ~ 33649657 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACCAGGCCTGTGTTTGAGCTGTAGCTCTTTAGCTGGTTAAAAGCACGCTGCTCCGCTGCGCTACAGGCTCCCACTCATCCCGAGCTGTTTTTAAGTTTCACAcagatatattattttaaaaacacggTCAGTTTAAACTCGTGGTTTTAAAGAGAAGATGGGAGTGCCGGCGTTTTTCCGCTGGCTGAGTCGGAAATATGCGTCTATAATTGTGAACTGTTTGGAGGAGAagtctAAGGAATGCAATGGAGTTCAAATACCAGTTGACACCAGTAAACCCAACCCAAATGAGGTGGAGTTTGACAACCTCTATTTGGACATGAATGGAATCATCCATCCTTGTACACATCCTGAAGACAAGCCGGCACCGAAAAATGAAGATGAAATGATGGTTGCCATTTTTGAGTACATTGATCGGCTTTTTAACATCGTTCGGCCGAGGAGAGTTCTTTACATGGCAATCGATGGAGTTgcgcCTCGTGCCAAAATGAACCAGCAGCGATCCAGAAGATTTCGAGCTTCCAAAGAAGGAGTGGAGCTtgcagaagaaaaacaaaaaatgagggAAGAGATTTTTCAAAGGGGTGGGTACCTGCCTCCTGAGGAAATCAAAGAGCGATTTGACAGCAACTGTATCACTCCAgGCACTGAGTTCATGGACAACTTGGCCAAATGCCTTCGATATTATATTGCAGATAGATTGACCAATGATCCTGGATGGCGTACTATCACAgtCTTTCTGTCTGATGCCAGTGTTCCTGGAGAAGGAGAACACAAGATCATGGATTTTATCAGGAGACAAAGGGCTCAACCAAACCATGATCCGAATACTCATCACTGTCTCTGTGGTGCTGATgCTGATCTGATTATGTTGGGCCTGGCCACTCACGAGCCCAACTTCACCATCATCCGAGAAGAATTTAAGCCCAACAAACCCAGACCATGTGGTCTGTGTGGACAAATAGGCCATGAACTTAAAGACTGTCAGGGAGTGGCTagagagaagaaaggagagCACGATGAGTTTGCAGACACAATTCCAGTGTCGGAGCAGGAATTTATATTCATTAGATTGTCTGTTCTGAGAGAGTATCTCGAGCGAGAGCTGACTATGGCTAGCCTGCCTTTCCCCTTCAACTTTGAGAGGAGTGTAGATGACTGGGTCTTCATGTGCTTCTTTGTGGGAAATGATTTCCTGCCTCATTTACCCTCTTTAGAAATCAGAGAGGGTGCTATTGATCGACTTGTGTCCATTTACAAAGATGTTGTTCACAAGACTGGgGGTTACCTCACTGAAAATGGCTTTGTGAACCTGGAGCGAGTAGAGCTCATAATGCAGGCTGTTGGAGTTGCTGAAGATAACATCTTCAAGAAGCGCAAAGATGACGAGGAGAATTTTAAAAGGAGAATGAAGGAAAAGAAGAAACGAATGAAAGCAGAGCAGGGCCCAGCATATCTCCCAGGAGGTCAGTTTGCTCCTCAAGCTCTAGGGGGAAGAGACCGACCCATGCCAGTGCAGAATGCACGTCACGCCGCCTTTGACATGAGGATGCAAGGAAACCGCAACCAGCAAAACAGGGATGCTGCTTCATCTCTGAAGGCCATGTTGAAGAATGGGAGCAAGGATTCTGCGGGGACTAGCGATGGCATGGACAATCGTGGAGTGAAGAGAAAAGCAGAAGACAGCGACAGTGAGCCAGAGCCTGAAGATAATGTCAGGTTATGGGAGGAAGGCTGGAAGCAGCGTTATTACAAGAACAAGTTTGATGTGGACGAGACTGATGAGGAATTTCGCAAAAAAGTGGTCAAGTCCTACGTGGAAGGCCTATGCTGGGTTCTTAGATACTACTACCAGGGTTGTGCATCCTGGAAGTGGTACTTTCCGTTTCACTATGCACCGTTTGCATCTGACTTCAAAGACATCAAGGACATGTTCAAGGAGTTTGAAAAAGGGACCATGCCTTTCAAACCTCTTGAGCAACTAATGGGAGTATTTCCTGCAGCCAGTGGAAATTTTCTACCAGAAACCTGGAGAGCACTCATGAGCAACCCCGACTCTTCAATCATTGACTTCTATCCTGACGACTTTGCAATTGATCTGAATGGAAAGAAATACGCCTGGCAGGGTGTTGCATTGTTGCCGTTTGTTGATGAACGAAGGCTGCGGGGAGCCTTGGCAGATGTCTACCCAGATTTAACCACAGAAGAGAtCAGAAGAAACAGTCTGGGGAGTGATGTGGTTTTTGTGGGGAAATCGCACCCTCTGTGTGACTTTATCAAGGAACTCTATTCTTCAGAATCTCGTGAGGGCACTGAGATTCCTGCGGAGCTGTGCCATGGAATCCAAGGTACATTAAATCTTGATGAAGATCCTATTCTACCAGATAAACCGGTTGAGTCTCCCATCCCAATGCTGAGAGATATTCCATACAGTAGTGCAGTGGGAATCAAATTCAAGGATCCGCAGTATGAAGGAGGTCACGTGTTCAAGGCTGTCGTCCTTCCCGGGGCTAAAATGCCAAATAAGGTGTTAAAGCCTGGAGACTGGGAAAGGTCGAACAGAGGGCCATGGAAACCTCAGCTGGGGTTCAATCCCAACCGTCAGCAAGTCCACCTGGATCAGTCTGCCTTCAGAACATTAGGcCATCATGTAAACAGATATCAGCAAGGAAGTGGACAGCACAGCCAAGGACCACCACGTGGTGGTCAGTACAGCAATGCTCCACCTCCCAGTGTATATCATCAAGGAAACTACAGACCACCGCTCAGAGACCACCAACCCCCATTTCAGCATTCCAGGCAACATGGATTTCCAAGAGCACATCCCCCGTCTCAACAGCAGTACCCAAGGCCTCAGTATGGAGGTCAGGGTTGGGACCGAGCAGTGCAAGCTCAAGGCTCTGCCTACCAGCACAACTCGCAGAGAGGTCGTGGAGGACCAGGTGGCTACCACCAGCACCCACAGCACAGAGATGACCGTAGACCACAGGAGggGTACAATTCTGCAAGAAATTATGCCCTGCCTCCACAGACAAGACGATACAACTGGAATTAAATGTTCAGCTTTCTGTATTGGGGATAATTGGTGTTGtgggtttttttcttttttcttttttccttttttttattaatgaaataCTTTAACATTTATGGGCTGTTGGTTTGTAAGATAGTACAAAGGAACATGTTCATATGTacgtatttttaaaaaatatgcgtctgtaaacacaattttacgttttgtttttttatatcatttttctttctttaaatgtCCTGCTCCCCCTATGTCCTAAAATACTTGTGCAACTCCCCTGGAGCCTCTCATTTTAGCAgtcaaaataatgtattatttgacTGGATGTTTGACATAAATCCTCTTGACAGGTTGAGCTTTTGGCCCTGTGTTTTGTCTCATTGGCTGAATATTCATAAATGTATCCTAATGAACAATTATACATGTAGATCTCTGCTTTGAAAGCCTAGTCTTTGAATGACAATGAATTAATTGGTTTTAGTCAACGGTGGTCTTCAATTTGAATTCCGCTGGCcagacatttttcatttccAAGTTTTGTCTGTGAATTATTTTGAGTGgccctattttatttttagaagttTGGTCCATTCAGTGGCTCTAGGTAATATTTTTATAGTATGTGTTGCACCAAATGTACAGCTTTTAGTTATAGCTTAGTCTATAGCTCAGAAACGTTTGCTTTTTTGAACGTTTTATTTTTGGAGCTACTGGATTAATGCAGCTTGTATGTAAGGCTCCTTGGCAGTTTGTGATGTTAATCATGTAATCTGAACATTTGGTTTAAAACTCCACCTACTTGTCTGAAAatgctaaatataaaaaaatgtgtgaaggcaacagtgtaaatgtataaCAGGTGCAAAAGTGTTAAggtttatttactaaatactaaaagcACCTAAATCTTGCCAAAAGGACAAGAATAATTTGCAATAAACATTAGACCGGTTTAGTGATTTGCCAGCCTGTTCGACTACAGTAAATGTTATCACTGTGTAAAGCAGACGgaagaaaatgttttgtttcCGAGTTAGTACAGAATGCTTTATTCAAACTTTTGATTAACAAAAAGGTAAATTTTGAGCtggtttactttttatttctcgAGCAAATGGGTCCTCAAATAAAAACTtggcaataaaaaaagatagaaaagctCAGCCTTTTTTACATAACTGTTCAATGCCCCGCTGTGATTCTCTTTCGTTTACGCGAAttgaaaatgtataattatcACTTTCATAgtgttgtaagaaaaaaaaaactttcgaATGTCCACGTGGTGTTAGAACTGAATCGTCATGCTGTGTAGCTTTttcttaactttaaaaaaaaaaaagacagaaccGAGTAAAATCGGTATCCAGTATTAGATATGCAGCCTACATTGCCCTTccatttttattctaaaaatcatattttacaaaGTGAAAATGAGATTTGATGTTCTGTCCGGCACATCTCTTCTatcatgaaataaacaaaataatagaaatcaGTCCGAGACTGCAATTCCGAAATCAAACCAATAAAAATCCACACATTTA

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0004534 5'-3' exoribonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12619 XRN2, RAT1; 5'-3' exoribonuclease 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31456 lncRNA upstream 29928 33587563 ~ 33595558 (+) False LOC107197779
TU31455 lncRNA upstream 45964 33579267 ~ 33579522 (+) True G23356
TU31448 lncRNA upstream 56544 33568394 ~ 33568942 (+) True G23349
XR_002651920.1 lncRNA upstream 123135 33501237 ~ 33502351 (+) True LOC111195982
TU31377 lncRNA upstream 264887 33360380 ~ 33360599 (+) True G23289
TU31468 lncRNA downstream 980 33650637 ~ 33654989 (+) True G23367
TU31509 lncRNA downstream 128285 33777942 ~ 33779900 (+) False cebpzos
TU31507 lncRNA downstream 128876 33778533 ~ 33779900 (+) True cebpzos
TU31547 lncRNA downstream 235805 33885462 ~ 33887869 (+) True G23427
TU31586 lncRNA downstream 396933 34046590 ~ 34047774 (+) True G23462
XM_015607393.2 mRNA upstream 29775 33587529 ~ 33595711 (+) True LOC107197779
XM_007255446.3 mRNA upstream 113869 33508074 ~ 33511617 (+) True insm1
XM_007255444.2 mRNA upstream 127165 33444402 ~ 33498321 (+) False cfap61
XM_007255445.3 mRNA upstream 127165 33444424 ~ 33498321 (+) False cfap61
XM_022684655.1 mRNA upstream 127165 33450645 ~ 33498321 (+) True cfap61
XM_007255535.3 mRNA downstream 26418 33676075 ~ 33681836 (+) True pax1
XM_022684736.1 mRNA downstream 129013 33778670 ~ 33779903 (+) False cebpzos
XM_007255437.3 mRNA downstream 139925 33789582 ~ 33798774 (+) True ndufaf7
XM_022678137.1 mRNA downstream 244679 33894336 ~ 33964508 (+) True cnksr3
XM_022684755.1 mRNA downstream 333537 33983194 ~ 34046385 (+) True LOC103030910
TU31174 other upstream 543624 33076654 ~ 33081862 (+) False LOC103037425
XR_002651887.1 other upstream 784160 32837052 ~ 32841326 (+) False LOC103042732
TU31098 other upstream 798547 32822344 ~ 32826939 (+) True G23086
TU30785 other upstream 2130588 31494345 ~ 31494898 (+) True G22834
XR_002651821.1 other upstream 3362593 30259308 ~ 30262893 (+) False LOC111195794
TU31552 other downstream 244718 33894375 ~ 33922851 (+) False cnksr3
TU31950 other downstream 1577192 35226849 ~ 35246299 (+) False trdn
TU31951 other downstream 1577192 35226849 ~ 35249655 (+) False trdn
TU32264 other downstream 2782551 36432208 ~ 36438970 (+) False ar
TU32543 other downstream 3988781 37638438 ~ 37654878 (+) True LOC111194342

Expression Profile