RNA id: XM_007255453.3


Basic Information

Item Value
RNA id XM_007255453.3
length 2421
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC103037759
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 33070811 ~ 33076140 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCACCGCGGAAGAGCTGCTGTCAAAACTTCCGTGAAGACGCTGCCGGGATTAAACAGGGCTCAGACCGGGGATCTCTCCGTAACCGCGGTTTAAACCCCTCAGCCGGGCTCAGAGCAGGGGCCGGGCTGTGTAACAGCCGTGTGAGTGAGCAGCACAGGCCGGTAGCGGGGTCAGAGCCGCAAACTCCGCCGCTGTTCGCGGTTGGTCTACAGTaactaacagcagcagcagcgatgGCGTCCAGCTACAGCGCTAAGGAAGAGGACGGGCAACGCGCCGGGGCTCCGGGACCCGCGGGCAACGCAAACAGTGGAAAGAAGCCCGACAACACCGCCTTCAAACAGCAGCGCCTGCCCGCCTGGCAGCCCATCCTCACCGCGGGCACCGTGCTGCCGGCCTTCTTTATTATCGGCCTCATCTTCATCCCTATCGGCATCGGCCTGTTCGTCACCTCCAACAACATCAAGGAGTTCGAGATCGATTACACCGGGACAGATTCATGGAGTCCGTGCTACAATTGCGCTCAGAACTACAGCTGGAACAGCTCGACGCCGTGCAGGTGCACACTGCCCTTTACTCTTGAGCAGCCATTTGAGAGCAATGTTTTTATGTACTATGGGCTGTCAAACTTCTACCAAAACCATCGCCGCTATGTTAAATCTAGAGATGACAGTCAGCTGAATGGAGACCTCTCATCACTGAAGtatCCCAGTAAAGAATGTGAGCCATATCGCCTAAATGAAAACAAGCCCATTGCCCCATGTGGTGCTATTGCTAACAGCATGTTTAATGACACGCTAGAATTGTACTACATCGATCCCAATGGAACCCAGACCCTAATTCCATTAATGAAGAAGGGAATTGCGTGGTGGACAGATAAGCATGTAAAATTCAGGAACCCTGGTGGCAGTAATGCCAACCTTACAGCTGTTTTCCAAGTCAGCACAAAGCCAGTCAACTGGCGCAACCCAGTGTACGAGCTGGACAGTGACCCAGAGAACAACGGCTTCATTAATGAAGACTTCATCGTTTGGATGCGAACAGCTGCCCTGCCCACTTTCAGGAAACTCTATCGCATTATCCAAAAGAAGAACAACATGACACCCACACTACCCAGGGGCAACTACACCCTAGAAGTTGTTTACAATTATCCTGTGAACAGCTTTGAGGGCCGTAAGCGCATGATCCTGAGCACCATCTCGTGGATGGGAGGGAAAAACCCCTTCCTGGGCATTGCTTACATCACTGTGGGCTCTGTCTGCTTCTTCCTTGGAGTGGTCCTCCTTTTCATCCACCACAAATACGGAAATCGAAACAACAGCTCTGACATTCCAAATTAACTACAACTGCATGCCCTCCACCCGCCCTCAGTCACATGCATGGTGAAGGCCACCTGCTTACTGTCAAGGCttgtctatgtgtgtgtcttttgtGTATTTGAATAGTATGCATGTAGTCGCACAGATACTGGCAGCACTTTGGAGGGTTGATGTGTATGCTGTGTTTAAATGAGATGGCTTGCAGCAAGGTGtgaattttctatttattttttgagataAGAATGTTCTGAGGTAAGTTAAGGTATACTTTTTATTACATTGTTTCTGTGTGTTGAAGATGATTCTACGGGCTGTCTCTTAATAGCTGTGCTTTAACtgaagtgtatatatttaaatacgaACAAGTGTAGCATTGCAGACTTTTACTTGAGGATTGCGTTTGAAATAACTGGATGAATGTATATAAGCTTTACTTAGCTGATTTCAGTCTAATTCTTGCCCGAGTCTTGCTGCCTAAAGAAAGTGATGTTAGACACCTGACATTAAATGTTCAGGCTTGTTTAACTAGATGTATGACTACTTGCGACCTTTGCTTACAAAGATTTTTGCCTCCACCAATTTAGAGGACAGATTTACCATTGAAGTGGTCAGTACAACACACAGTTTCCCAGGTgtataatgaatataaaaaaatgactgaTCGATTCACAGGTTTTAGTGACATAATGACTGTTCTCTCTAAACagtgatttcatgtttttcatggaTAGGTCAATAAGAGGAGGATAAGGACTGTTCCTATTGAGAAATCCTCAGGTTGAGCTGAGTTTGTCCTGCCAAGCCGACTTCCACAGGGGTGTGTTGGAGCATTGCAGACTTCATCACCTTCATGTTAGGTCTGCACATTGTTTGCATTATTCAAATGCAGCTACGTGTACTacatgtctttttctttttttaaatcagttttggaGATTTGCTGtgtgtcttttattttatctgtcaCAAGTCATCCTGTCTATAATATTTTCAGCCGTTATTTGCACTTTAGACATGCCTTAGCTTACTTGACTCTTTTGGTTTCTTCAGTGGAGCTGTGTCTTTCATTCCtgatgaaataaacaaatacaattgAACCCA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31132 lncRNA upstream 176161 32894241 ~ 32894650 (+) True G23116
TU31123 lncRNA upstream 229465 32837058 ~ 32841346 (+) True LOC103042732
TU31086 lncRNA upstream 354366 32711872 ~ 32716445 (+) True G23075
TU31072 lncRNA upstream 523347 32525062 ~ 32547464 (+) True G23062
TU31062 lncRNA upstream 543087 32522014 ~ 32527724 (+) True G23057
TU31181 lncRNA downstream 7502 33083642 ~ 33169392 (+) False LOC103036694
TU31326 lncRNA downstream 96229 33172369 ~ 33172714 (+) True G23251
TU31328 lncRNA downstream 113821 33189961 ~ 33190715 (+) True G23253
TU31330 lncRNA downstream 131172 33207312 ~ 33207532 (+) True G23255
TU31370 lncRNA downstream 269672 33345812 ~ 33346060 (+) True G23282
XM_007255455.3 mRNA upstream 3084 33016420 ~ 33067727 (+) True filip1
XM_007255456.3 mRNA upstream 3084 33016421 ~ 33067727 (+) False filip1
XM_007255454.3 mRNA upstream 8270 33016421 ~ 33062541 (+) False filip1
XM_007255458.3 mRNA upstream 100792 32931610 ~ 32970019 (+) False kif13b
XM_022684612.1 mRNA downstream 484 33076624 ~ 33081849 (+) True LOC103037425
XM_022684641.1 mRNA downstream 8300 33084440 ~ 33169392 (+) True LOC103036694
XM_022684615.1 mRNA downstream 8301 33084441 ~ 33169392 (+) False LOC103036694
XM_022684629.1 mRNA downstream 8301 33084441 ~ 33169392 (+) False LOC103036694
XM_022684633.1 mRNA downstream 8301 33084441 ~ 33169392 (+) False LOC103036694
XR_002651887.1 other upstream 229485 32837052 ~ 32841326 (+) False LOC103042732
TU31098 other upstream 243872 32822344 ~ 32826939 (+) True G23086
TU30785 other upstream 1575913 31494345 ~ 31494898 (+) True G22834
XR_002651820.1 other upstream 2807918 30259308 ~ 30262893 (+) True LOC111195794
TU31174 other downstream 514 33076654 ~ 33081862 (+) False LOC103037425
TU31552 other downstream 818235 33894375 ~ 33922851 (+) False cnksr3
TU31950 other downstream 2150709 35226849 ~ 35246299 (+) False trdn
TU31951 other downstream 2150709 35226849 ~ 35249655 (+) False trdn
TU32264 other downstream 3356068 36432208 ~ 36438970 (+) False ar

Expression Profile