RNA id: XM_007255627.3


Basic Information

Item Value
RNA id XM_007255627.3
length 5666
RNA type mRNA
GC content 0.44
exon number 9
gene id disp1
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 70826240 ~ 70851966 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCACATGCGCGGTGCAGACCGGGGGTCCTGGTTAGGTCGGGCAGTGACGCTGGTTTCTCTTCAGCATGGCAGTGCGCGGTTCGGGGCGCAGACTTCGGTTTCGGGCGCCGTTTCAGTACTGCGCGGTGTAGAGAGCAGGGCACGGGACTCACACAGCGTCGGGAAATGTGCGCAGACCCCTTCAGCTCGCGCCGCGGGAACGCTTCCTCACTTCCTGTAGAGTAATTGGATGTTGTGCAGCGGCTCGCGGATCCTCCACTGAACAGAAGACACATCCCGAGCTTTCTGCGGGGCTGTGCGGGTTCTGAGTGAGGTGGTAAACCATCAGGTGTTCTGCAATGGGAATCATAGGAACCAACTTTACCAATGCGTGTACTTCTATAAAACAGCAGTGCATCAGTTACATCACATCAGAGACAAACAAGTGGACAGAGGACCATGGCTCTGAATGAAGCATCCAGGGATGAGCTGCCATTCAGAAAAGATGACCCACTAAACACCTCAGCTGCAAAAACTCTCACATCCTGCGTCAACTTTAGCTCCACCAGTAAAGCTGTTTCAGACACAAATGAGGAGGTAGAGCTGGGACCAATAGCTTCTGACACAGAACCTCTGCAACTGTCACAACTGACACCACCAAGCCAAAATGGAGGTATCAGGCAGAATGGCTCCTTCCGACCACtgtctttctcctcctcctcatcagcATCTTCATCACATCACACAGACCCTCATAGACTGGCTAAGCTGTTGCCAAGTTCTTTTCCACCACCTTGTTGTGTCCACTGTCCCTTTCATGAGCCTGTTTGCTGCAGCGGGAGCCAGCAAGAAGGCAGACATTTTCAGGGGCCTTTGCCCTCAAGGTCCTTTCACATGGGCCCCTGCTGTATACAGGCCACCCCTACTTTCTGTATGTACCACCATCACTTTCAGGAGCACTTTCAGAATCAACCCAACACGGCCACGTTAAGTGCTTCAAGGCCTTTTCGCTTCCCTAAAAGTTATGCAGAGCTAATTTCTGACTGGCCTGTGGTGGTGCTTGGTGTGTGTACAGTGCTGATTGTGATGTGTACATTGGTAGGCATCCTAGTGCCAGACCTGCCAGACTTCTCTGATCCTTTACTGGGCTTTGAACCAAGGGGTACTGCAATAGGTCAGCGACTTGTCACATGGAACAACATGGTGAAAAACACAGGCTACAAAGCAACTTTAGCCAACTACCCTTTCAAATATGCAGATGAGCAAGCCAAAAGTCACCAAGAAGACAGGTGGTCAGAGGATCACAATGAAAGAGATAAAAGGCAAGCAGAATGGGATTTCAGTAAAGACAGTTTCTTCTGTGATGTTCCAGGTGACAGCTACTCTAGAATTGTTTTTGCCTCTGCTGAAGGGAAGAACTTGTGGAATATACAAGCTATAAAATCCATGTGCAATTTTGACAATACCAGGGTTCGCTCTCATCCCCAGTACTGGAGTTTGTGTCAGCGCACCACAGCTGCTTCCTGTTGTCCTAGTTGGACCCTTGGCAACTACATTGCAGTACTCACCAACAAATCGTCCTGCCAAAAGATAACAGAACGAGATCTGTCCCACACCTTCAAGGTTCTGCGCTCCTGTGCAAAGTACTACTTTAATGGTACCTTGGGTCCAGAATGCTGGGATATGACTGCCCGTAGGAAGGACCAGCTTAAGTGCGCTAGTGTTCCCAGAAAGTGCACCAAATACAACGCTGTATATCAGATTTTCCACTTCTTGGTGGACAAAGATTTTCTTAATCCAAAAAACACTGACGTCCTTCCACCAGCACTCAAATACAGCATGTTGTTCTCTCCCACGGAGAAAGGTGAAACTATGATGAATATTTACCTGGATAACTTTGGGGACTGGAACTTTACAGATGGAGTCACTACTGTGGCTGGCATAGAGTTTGGtatcaaaaataatttgtttcaaGAGTACCTTCTTAAAGATACTGTGTATCCTGCAATAGCAATTGTGATTGTTCTAGTggttatgtgtatatatacgaAATCAGTTTTTATTACCATCATGACCATGTTTGCCATTATCAGCTCCCTGATTGTGTCCTACGTTCTTTATCGGGTAGTCTTCAACTTTGAGTTCTTCCCTTTTATGAACCTTACAGCACTCATTATTCTTGTTGGAATTGGTGCTGATGATGCCTTTGTCTTATGTGATGTCTGGAACTACACAAAGATTGACAAGCCCAACTCTGAGCTTTCAGAAACTGTTAATATCACTCTTCAACATGCAGCGTTGTCAATGTTTGTCACCAGCTTTACAACTGCGGCTGCCTTCTATGCTAATTATGTCAGCAACATCACAGCCATTCGTTGCTTTGGTGTATATGCTGGCACTGCCATTCTTATCAATTATTTTCTTATGGTAACCTGGCTGCCTGCCATTGTAGTCCTACACGAGCGATACTTTCTCAACCTCTTCATATGCCTCAGGCCTCCACCTCATCAATTTTTTAGTGCCACACGCCTTCTGTCAAATCTTTGTCAGAAAGTAAGTAGGTCTTTGCGTATTATTTCAAAGACCTCCCGCATATTCTTTGAAAAAGTATTGCCATGTATTGTTATGAAGCTGCGCTACCTGTGGCTCTTCTGTTTCCTTACATTCACAGTTGGTGGGGCATATATCGTCTGTGTGAACCCCAAGATGAAGTTGCCTTCATTGGAGCTGTCAGAATTTCAAGTGTTTCGATCCACACATCCTTTTGAGCGCTATGATGCAGAATACAAAAAACTTTTCATGTTTGAACGTGTGCATCATGGAGAAGATTTGTACATGCCTATAACTATTATATGGGGTGTTACTCCAACAGACAATGGGGATCCCTTAAACCCTAAAAATAAAGGCAAACTGATTCTTGATACCAGCTTTAACATTGCCAGCCCTGCCAGCCAGATGTGGATTCTTAACTTCTGTCAGAAGCTTAGAAATCAAAGCTTTGTGTTTCAGTCTAATGAGCAGGACTTCACCAGCTGCTTTATGGAGACTTTTAAGCAATGGATGGAAAACCAAGACTGTGATGAGGCTCGAGTCTACCCTTGTTGCAGCCAGTCAACATTCCCCTACAAACAGGAAGTATTTGAGTTGTGTATCAAGAGGGCCATTATGGAGCTAGATCGCAGCACCATTTATCACTTGGACAGTAAGACTCCAGGACCAAGATTTGACATTAACGATACCATTCGTGCCATTGTACTTGAGTTTCAGAGTACTTACCATTTTACTCTTGCATATGAGAAGATGCATCAGTTTTACTATGAGGTAGACGCCTGGATCCAGGAGGAGTTGAGGAGTGCTCCAGAAGGTTTAGGCTATGGCTGGTTTGTCAGCAACTTGGAGTTTTATGACCTTCAGGCCAGTCTTTCAGATGGCACACTTATTGCCATGGCATTGTCTGTGATGGTTGCCTTCAGCGTTATGCTTCTGACAACCTGGAATATCATTATTAGTTTCTATGCAATCATTTCAATTGCTGGAACCATTTTTGTGACTGTGGGATCATTGGTGCTTCTAGGCTGGGAATTAAATGTTCTGGAGTCAGTCACCATCTCCGTTGCTGTAGGACTTTCTGTGGACTTTGCAGTGCATTATGGTGTAGCATATCGGCTTGCTCCAGAACCGGACAGAGAGGGGAAGGTTGTTTTTTCCCTGAGCAGGATGGGTTCAGCCATTGCTATGGCCGCACTCACCACCTTTGTTGCTGGGGCAATGATGATGCCATCCACAGTCCTAGCGTACACTCAGCTTGGCACTTTTTTGATGCTAATTATGTGCATCAGTTGGGCTTTTGCTACATTTTTCTTCCAGTGCATGTGTTGCTGCCTTGGTCCTCAGGGCACCTGTGGACAGATCCCTATGCCCAAGGCATATAAGTGTCATGCTTTTAAAGCAAATCCCTCGGATTCCTCCTGCCGTCACGACCAAGGAAAACACTGCCAGTCAAGCAAGTATCAGGCAGATAGCAGAAAAGGAGAAGTTGATTATGAACTTCAGCCTTTGGCAACCAgtgttaaaaatattgaaaagacTGAAGAACAAGAGGAAGAAGCATGTACAGAACTATCCAGTGGGAGACTTCATCATGCACCttgctttcaatttaaaagcaAAAACGAAAACACTGGCCCTGACAATGCCATACCAGTTACAGATTCAGCACTTTTGCAACAGTACAATGCTAGGATTTGTGGGGATTCTTTACCTCAGCATATATTGGGTACACAGTGGAACATTAACCACCCTTGTATTCAAGCAAGAGAGTCTTCATGCTCACCTTCACATTATTCATTTGCTGGTAATCATGTAGCCAAAAGTCAGAGTATCTTGTCTACTCTTGATATGACCCACAACAATCTCCTCAACTATGTCAAGTGTGCCCCCGCCCGCTTCCATCAATGTTCCAAGACTCAAACCCCGCGATCGGGCCACCTTAAATCCCACGCCTGCTACCTTAAGGGATACGGATTACATTCACTGAACCTTCAGCCTCAGACTCACCCAACTGATGCTTCAGAACTGGATGGATCCCGCCCATGTAATTGCAGTCTTTCGCCACCTGAGGACCCTTCGGTTCTGTCCAGTTTTCCAACAAATGACTGCGGCACCTTACCTCAAACACCCAGAACATGTATAAAACAAAAGTCAGGTGACCAAACACTGAATCCCAAAGTCTTTCAGGACACAGCgtgtaaccaaaaaaaaacaaatgtgacaAATGACACTTGTGAATCTGTGCAGAGTCACCATGAAGAGCTGAAGCCTGCTTCTACCACATTGGACACCAGTGTCCAATGCAGTCAAGATCAAAAAGACATTTCTGAGAGAGCTGATTCTTTGAAACCATTAAACTACTTTAACAGGACTATGAAACTGAAGTGCAATTCTGTAGAGTTTCataaacttaaaattgatgCAAATGTGCCTGTCCTTGCCATTAATTCACAGCCCTCATCTGAAAGTTTATGCTGATggtcagaattaaaaaaaaaatctgacagtAAAGAATTTGaagatatacagtacatgttCTGTGCAATTACTCttcaaataaatgtgtaaacatcactgttttttgtttttcctacaTAAATATCTTGTTTTAGAGTTCTGAAGTTTTAAGGGTgttctacattttaaaacaggaaTCACCAGCGCTGTTTCTTGAGAGAAACGCCAAACACTAACCTGATCCATCTAATTTCTTTCTCCAGCATTGGTGATCTGTTGAATGGGGTGTGTTAAGCTAGGGATATATTTGCTGATTGGccatgtgttgtttttttttgtttgttttttttttgcttttttgttttttactaaatttattttatttttattttttagatcatTTCCTCATGATGCTGGCCAACTTGTAGTAAAATTACCTATACCATTGGCTGATCAGATAATGTAAGTTTAGCATAAGCTAATGACTTAAGCTAATTTATGATGcctaaatccaaataaaatgtgAGTTTGGTCAGCTTAATTAGCTTTCCAAGATGGTGGCTAATTTCACTAAGCAAATGTCTATGATTTAGGGCTCATCCCCAGTTGGGAAGTGTTtggtttttttattgaaatacaaattattgCTTCTTATTAATAAAGACTATACATGTTGCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43137 lncRNA upstream 30137 70794559 ~ 70796103 (+) True G32139
TU43106 lncRNA upstream 145451 70679993 ~ 70680789 (+) True G32120
TU43103 lncRNA upstream 160310 70660684 ~ 70665930 (+) True G32117
TU43081 lncRNA upstream 186501 70628932 ~ 70639739 (+) True G32105
TU43079 lncRNA upstream 203082 70622440 ~ 70623158 (+) True G32103
TU43154 lncRNA downstream 4845 70856811 ~ 70867509 (+) True G32151
TU43180 lncRNA downstream 94008 70945974 ~ 70959757 (+) True G32174
TU43233 lncRNA downstream 251259 71103225 ~ 71105791 (+) True G32210
TU43245 lncRNA downstream 277724 71129690 ~ 71132041 (+) True G32219
TU43477 lncRNA downstream 409339 71261305 ~ 71291859 (+) True G32379
XM_007255631.3 mRNA upstream 4948 70777869 ~ 70821292 (+) True LOC103037005
XM_022665729.1 mRNA upstream 42453 70781951 ~ 70783787 (+) True LOC111191283
XM_022665702.1 mRNA upstream 48460 70754250 ~ 70777780 (+) False LOC103036403
XM_022665798.1 mRNA downstream 236874 71088840 ~ 71096529 (+) True LOC103039880
XM_022665824.1 mRNA downstream 254665 71106631 ~ 71113908 (+) True LOC103046432
XM_007242524.3 mRNA downstream 254705 71106671 ~ 71113908 (+) False LOC103046432
XM_007239526.3 mRNA downstream 339854 71191820 ~ 71256074 (+) True suco
XM_007239533.3 mRNA downstream 426352 71278318 ~ 71286026 (+) True scrn2
TU43083 other upstream 186501 70639083 ~ 70639739 (+) False G32105
TU42949 other upstream 497212 70303036 ~ 70329028 (+) True G32009
TU42854 other upstream 626498 70196925 ~ 70199742 (+) True G31939
TU43152 other downstream 4845 70856811 ~ 70867643 (+) False G32151
TU43208 other downstream 221882 71073848 ~ 71075886 (+) True G32198
TU43252 other downstream 285546 71137512 ~ 71141184 (+) True G32225
TU43257 other downstream 315558 71167524 ~ 71169556 (+) True G32229
TU43523 other downstream 1112038 71964004 ~ 71980363 (+) False dab1

Expression Profile