RNA id: XM_007255638.3


Basic Information

Item Value
RNA id XM_007255638.3
length 1552
RNA type mRNA
GC content 0.44
exon number 3
gene id c3h8orf82
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 70640472 ~ 70643325 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAAAGTGgacacacactgctcactgtAACACTGCTCCTGTGGCAGCTGACTGACTACACAAATCCTGCTAAATAAAGCAGGTTATTTTCAGTAAGGGGTGAAATTCCAGGCGTGTCTTTACAAAGTAGGTTATCTACCTAACGTAGGCTTCAGTGGGGTGATATATTGAGCTTGTTGAGAGTGGAACTATTTATTCAGAGCCCTCAAATCCACCCGGTAGATGAACGGTGAGCACGGCTCGTTTGTAAACACTGCTGCAGGCTTCTGTGCTGGTCTATCGGCGGGATCCGCGCTGCGCTTCAGGGCTGATGGCGGCGGCTGCGCTGCTCCGCTGGGGGACAAGGAGCGCCGGGGGCCTGTGGTCGGCTGTGCGCGTGCCCGCCGTTTTCTCTAGAGGTCAGGTCTCGTACACGCAAGGGCAGAGTCCGGAGGCGCGCTCCCGCGAGTACTTCTACTACATAGACCACCAGGGTCAGCTGTTCCTGGATGATACCAAAGTGAAGAACTTTGTCACTTGTTTTAAAGATCCaaagtttcttgttttcttctttaaacAATTGAAAGTCAATCAGAGTGGTCGCTACCAGCAGCACTTCCCCTTTTTGTCATTGTGTGGACGTGAGAGGAACTTTCTGCGCTGTGACGATCAGCCAATCGTCTACACTCACCTGTTATCTAAAGCAGGATGTGAGGAGCGTCTTTCATACTGTGGAGGTGGGGATAAACTGACAGTTCTATTCAGGCCAGAATCTTTGTTCATGCATCCAGTCAGTGGTAGAGTGTACCACCCTGCTCCGGAGCATGTAGGGGGTGTTGGACTGGTGCGCTCTGCACTGGCCATTGAGCTCAGTCCTCATTTTCAGTACTCTTCAGGTCAGGACAACACTGCCCAGCCCACCCATTTTCTGTGGGCCGGGCAACAACACACTCTGACCAATGATTTGTCCAGACATTTTCTTTAGATTAATAATACTGTTTAGTTACATTTGAAATTATGCATTTGTGAGATATTGTAATTATATGTTTGTGAGAGAAATACCTGCACAATTATTCTGATTTATTCTGAGAATATGGTTTGATTGTGGAGATATGTAACTTTGTGTAtggttatttaaataataaaaggtaGGTTCAGGGTTTCTGAATGAAATATGCATTAAgttatgttaattaataaatacctATGGTCATTTTCAACAAGAATGTGTGATTTAGAATTCATGCAAAATGGCCCAGTGTACAAAGAAAGCTGTACACTAAACCTGAACTGGAAAGCCGGGATGTCCGCTTATATTACACAGTTTATTATCTTGTAAACAGTTTAGCTAGACCCTAATGTTCTTAACTTCTTGTACTACTTCACCTgtaatttgcattaaaaaaatgctttatctggtcttttattttacaatggcAGCTTGGCAGCAGGCAACAAGACAAAAAATACTGCCTTACTTTAGTTTGCCTTACTTGTGACTATTGCAtgtctgcatattgtgatgacGATGATACAATGTATTGTTCAACCCTAAATTAAACCCTTGATTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43052 lncRNA downstream 119548 70514094 ~ 70520924 (-) True G32082
TU43048 lncRNA downstream 119548 70514519 ~ 70520924 (-) False G32082
TU43045 lncRNA downstream 132069 70507457 ~ 70508403 (-) True G32080
TU43040 lncRNA downstream 155006 70484280 ~ 70485466 (-) True G32075
XR_002649406.1 lncRNA downstream 269217 70367067 ~ 70371255 (-) True LOC111191251
TU43294 lncRNA upstream 36616 70679941 ~ 70680789 (-) True G32248
TU43313 lncRNA upstream 73948 70717273 ~ 70726275 (-) True G32261
TU43317 lncRNA upstream 92940 70736265 ~ 70738479 (-) True G32264
TU43322 lncRNA upstream 104901 70748226 ~ 70750818 (-) True G32267
TU43336 lncRNA upstream 133824 70777149 ~ 70777850 (-) True G32275
XM_022665626.1 mRNA downstream 546 70622015 ~ 70639926 (-) True naprt
XM_007255641.3 mRNA downstream 20585 70600828 ~ 70619887 (-) True rhpn1
XM_007255642.3 mRNA downstream 51475 70585895 ~ 70588997 (-) True hlx
XM_007255643.3 mRNA downstream 51485 70585895 ~ 70588987 (-) False hlx
XM_022665568.1 mRNA downstream 167888 70452946 ~ 70472584 (-) True mia3
XM_007255626.3 mRNA upstream 213425 70856750 ~ 70867662 (-) False brox
XM_007255625.3 mRNA upstream 213425 70856750 ~ 70867476 (-) True brox
XM_007255681.3 mRNA upstream 227538 70870863 ~ 70915650 (-) True tshr
XM_022665767.1 mRNA upstream 275151 70918476 ~ 71043182 (-) False LOC103033556
XM_007241837.3 mRNA upstream 411120 71054445 ~ 71060960 (-) True snw1
XR_002649364.1 other downstream 1478568 69145308 ~ 69161904 (-) True sec63
TU42561 other downstream 1811452 68827985 ~ 68829020 (-) False fam84a
TU42459 other downstream 2548891 68091220 ~ 68091581 (-) True G31622
TU42346 other downstream 2778200 67855647 ~ 67862272 (-) True arpc5
trnat-agu_1 other downstream 2981821 67658579 ~ 67658651 (-) True trnat-agu_1
TU43425 other upstream 445550 71088875 ~ 71089461 (-) True G32343
trnat-ugu_81 other upstream 453306 71096631 ~ 71096703 (-) True trnat-ugu_81
TU43449 other upstream 495161 71138486 ~ 71142338 (-) True G32364
TU43617 other upstream 1335735 71979060 ~ 71982053 (-) True G32492
TU43689 other upstream 1598205 72241530 ~ 72242270 (-) True G32557

Expression Profile