RNA id: XM_007255641.3


Basic Information

Item Value
RNA id XM_007255641.3
length 4758
RNA type mRNA
GC content 0.44
exon number 16
gene id rhpn1
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 70600828 ~ 70619887 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGGGGTTAAGTTAGCCCGGGTCAGTGTGAGGGGAGACGGTGGGAAGTGTGTCAGTGGGGGACAGTGCGGTGGTGAACAGTGGGTGAAACGTTGGGCCTCAGTATAAAGTCTTTGTCTGCACTATCGACTCCTCCCGACTGACGATGCCTCTGCGTTGCCACGGACAACGGTCGTCTTTCCGCTTCAAATCACTTTTGAACACGCCCACCTGCTCCGGGGTTGGCGCTCGGACTGCCAATCAAGTTTCCACCTCGTGCTCCTATTGGACAGCTGGGCTGTCGCTCACCTGTATCGCGCTCCTATTGGCTAAAGCAGAGGAGTGGGCTCGTTCTGGGACTTAAACCGGAGCAGGGACGCAGATCAGCTGCAGCAGCGGGTCTGCAACAAGTGTCTTGCTGTTATTTTCGATAGTTGTTCTCTACCGGGGTTCTGGTTTGGCATTATGGTGAAGAATCGTCTGCAGATCGGAGTTTTTTACTGGATAGAGGGGTTGGACTGGTAGGAAACTAATCCAAAGCCCGGGTTTAAGTGGGTCCTGCTGGTGAATGCTCCATGTGTGAGGGGGGATTACCGTGAAACTCCCGGATTTGCTGAAGTTTGACATGCACGCAGTCTGGAGTGTCGCGTGACCTCGTGTCGCAGTACGGGCGCGCGCTCTCCGCTTCTGCCGAGTTCGCGTTTCTTTAAGGACTGCAGGGTCCCGGCCGCCCCGCGCGCCCCCCGTGACGCAGTGAGTGTAGTGGGCAGGTGAGCGAGTGCCCCCCGGAGAGAGGAGAATGTCGGACACTGGCTCAGAGGAAGAGGTATCAGTGCTGAGGGAGGAGGGGGTCTCCGGAGGATCAGTCAGAAAGGGATGTGATCCTCTAGTGTTAACACAGCGCAGCAAACTTCAGCAGAGACGAGCCAAACTCAATCAACAAATCAACCGTGAGCTGCGTTTACGAACAGGAGCAGAAAATCTCTACagGGCTACAACTAATCAGAAAGTAAAGGAGACTGTGTCATTGGAGTTGAGTTTTGTAAACTCAAACCTGCAGCTACTTAAAGAAGAACTGGAGGAGCTGAATAGCAGCATGGAAGTTTACCAGACAGAGAGTGAGAAGGTCAATGTGCCCATGATCCCACTTGGACTCAAAGAGACTAAGGAAATCGACATGACTATCCCTCTTCAGGACTTTATCAGTGAACATTATGGAGAAGATGCTTCTCTGTATATGTCAGAGGTCAAAGAGTTTATGGATCTCAGACAGGCGATGCGCACCCCCAGCCGTAATGACGCGGGACTCGAGTTGCTCATGGAATACTACAACCAGCTCTATTTTCTAGATCAGCGCTTTTTTGCCCCACACAGGACACTGGGAGTTCACTTCCACTGGTATGATTCCCTGACTGGTGTGCCTTCGTGCCAGAGAGCGCTAGCTTTTGAGAAAGGAagtgtgttatttaacattggGGCACTTTACACACAAATTGGAGCAAGACAAGACCGCTCCACACTGCCTGGCATCCAGAACGCTATTGATGCTTTCCAGAGAGCTGCTGGAGCTTTTCTCTACTTGCAAGAGAATTTCTCTCATGCTCCCAGCCTAGATATGAGTAGCCCTGCACTGAGTATGCTGGTTCGCCTCATGGTTGCTCAGGTTCAGGAGTGCATTTGTGAGAGAGTAACACTTACTATGGAGGAGAATGATCTCATGTCGAACCTACAGGCTGCTCAGGAGTCAGCACGAGTTTCAGATGTTTATTCGCTGGTGCTGCAGGCCATGTCTGTGCCTTTACTGAAGGATTATGTGCCATTCTCCTGGCTCTCTGTGGTCCAGGTCAAAACTCAGCATTTTAGAGCACTGGCCCATTACTACACTGCTGCTGCACTGTGCGACTGCTCAGATATGATTGACAAGGTCAATGATTGTGGTTCTGCGGTGAAGGCCTTAAAGCTGGTCCACACTAGACCTCCAGACACACTGTGTCTACAAGAGCCAGAGGACAGACTGAGACTGGGTAAAGGTCATTTGCGCAAAGCCATCATAAGACACGAGGAGGCGTTGCGCCTCCATGGTGTGTGTAAGATGCTGCGCAAGATGGATATTTTACAAGAAGTCCTAtcatatgcacacacacgctcactGGAGAAATACTCAGACATTGATCAAGAGGATGATTTTTGTGAAATTGCAGAAGCGCCAGAAATTCAGTCACACACTTATCAAAAGCCTGATATTAAAACTCCTGACTTCAGCTCAGTTAGAGTAACGGACATCTTTCACCGACTGggccctctctctttattttgtgCTCGGAATCGATGGGTGGGTCGTCGTTTGTGTCTGGTGCGAGGAGAGGCGGGGCTTGGTCTCACTCTGCGTGGGGATTCACCGGTTTTGGTTGCTGGTGTGCTGCCAGAGGGATGTGCTGCTGAGGCAGGACTTCATGAAGGTGATTACATAGTGGCTGTAAATGGTTCAGACTGCAGATGGGCAGAGCATGCAGAGGTTGTTCATGTTTTGAAAGGCTGTTCTGAAAGAGGAGTGGAGCTTGATGTTATTACCCTACTCACAAACGAGGTAGAGAAAAGGGCAGCCTCACTTTCACCCAGCAGTGACCGGGAGACTGTCACTCAACAGAGACAAGGTGGAGACAGTGACAGAGGCTCCACCTCTTTACTGAACTGGAGCTGGAGAAGTGGTGGAGGAGGCAGAGTAACAAAGAGACTTGGCAGCACTTTTAGCCTTCCATTTGGCAGTTTGCGCGAGAGTGAGTCTATGTACTGACAGAAAATGATGTATTTAAGCAAAAAAAGCACTGCTCTTTTTCCTagcactgtttttctctgaataaTTGACCATCAGTTATACACAAGTTACATAACCTCAAAGTaatatgtaaaataagtaaaacacaaAACCCTAAATTGCAGTAATGGCAGTCTTCCACAAAGTTTCCAGGCTGATTTCATAGCATAGGACAAATTATGTAGCTTTTGTCACTTTTGTATAGCTTTTTTTGGTACATCTATAAATGTCATGCTATTGATGTTGAGTGTTCAGAAAATAATACGCAGTGCTAAACATGGCTTATTTAGGAGCAACACTGTAGTGTTCTGACTGATATCCAGCTGTGCAGGAAGGACACACAAGCAAACTATTAGCTTTTAAACCACCTAATTTGAAATATGTTAACTATTTAGAACATTGGTGTAAATTAAGTTAGAAATCCGTTTCTATTTTGATTAATTTAGAGCGTATGATGAATGTAGATTTGCACTAAACAAGAGTGCTATTGTAGCTCtgtgttttgtaatatttttttttgtgagttgTAGAATCACTGTTGTCTGCACTGATACACGATGCCTTGTTAACTTTGTATCCTTAATTCTTCTGCAGCATACCGAGAAAACTGTGCACattgtttaatgtattttgtaaaCTTTAATTCAGGGAGAACACATCCTTCtaatacacttaaaatgatcAGCATCCAGCTTAAACATTAAAAGGTCCAATGTTCTACAATAGGTAAAGACACAACTACTGCCTGCAAAATTACATAACCTAGGATCGTTTACATGATAATGAATTATGTTGCCACACAAAGAGACTCATACTTTAGAGTCAGGTCTAGAGGAGGAGTGTGGGATTGGAGTGCTTATGTGTAAAACACTCACATCAGTGTCTGTTTGTGTCTCCTCCAGTCATATGACTCCCCAGGCTGagattacagtaaaatatgatGCTGGCTGGGTTGTTGGTTTGCGATAAAATGTCTTTGTATTTGAGTTCAGCATTAAAAGCTACAAAACAGTGAATTTCCATTACAATAGTGCACATCATGGAATGTTCTAGTAACACCTCAGAACAACAGGCAGAGCTCACCAACAGCTGATAGTGGATGGCCACCAACTGGCCAAGGTACATAATGCGCTTAAGTTGCCCCATGTACTACctggaaaacattttttattcattatctaGAGAATTTGAGAAAGACAAATAACAggaaatacttaaaaaagaagACATTTCCCATTTTACCCATTAGAAAAACCTACTTATGTCATACTGagtaattttttatattatacattttatgtacatttttcttTGATATTGATGTTTATAACATTCTTTTGGTTTCATGTTTCAAAGATGGCCAGAACTTATCTATCATGATTATTTTCAGCATATCTTTATCTCTCAGATTAAACAAGCCTTTTATGTACACTGTTCTGATGCACAGTGTGAAACATGCCTGAGAGTTGCTGTATAAATAAGTAGAACTAAACCACTACAGACTGATATATTAATGAGTTTGTTCTTGTGGCATCATGACAAAAAATCTCCATATATGGACtgctttaaactttttatttcttcattataTATCCCCATTAAAACATGAAGGAGACATTGAATGTACCAAGCTCTCGTTTAGCCACTTAATTTTCAGCCACTTCTCTTGATATTGTGAGGCATCATGTTATCCTGTTTTATTGAGTATTctgtattaaaaacaatacagaATGTTTACTTGAAGGCAGTGTTTTATGCTAGAATATACCAGAATGTTAAGTGTTAAGTGTAATGTTTTGTCATTTGTATTGGTATTGTAGATTGTTTACTGCAATGGCAAGAGCTCATGAATGGTACTTATAGGAGCACACACACATGTGGACATCCGTTTTTAACCTGTTTATGTCCAAATAATATTTAAGTATGAAAGTTAAgtttaaattgtgattaaatTCAATGAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43052 lncRNA downstream 79904 70514094 ~ 70520924 (-) True G32082
TU43048 lncRNA downstream 79904 70514519 ~ 70520924 (-) False G32082
TU43045 lncRNA downstream 92425 70507457 ~ 70508403 (-) True G32080
TU43040 lncRNA downstream 115362 70484280 ~ 70485466 (-) True G32075
XR_002649406.1 lncRNA downstream 229573 70367067 ~ 70371255 (-) True LOC111191251
TU43294 lncRNA upstream 60054 70679941 ~ 70680789 (-) True G32248
TU43313 lncRNA upstream 97386 70717273 ~ 70726275 (-) True G32261
TU43317 lncRNA upstream 116378 70736265 ~ 70738479 (-) True G32264
TU43322 lncRNA upstream 128339 70748226 ~ 70750818 (-) True G32267
TU43336 lncRNA upstream 157262 70777149 ~ 70777850 (-) True G32275
XM_007255642.3 mRNA downstream 11831 70585895 ~ 70588997 (-) True hlx
XM_007255643.3 mRNA downstream 11841 70585895 ~ 70588987 (-) False hlx
XM_022665568.1 mRNA downstream 128244 70452946 ~ 70472584 (-) True mia3
XM_022665570.1 mRNA downstream 128247 70452946 ~ 70472581 (-) False mia3
XM_007255653.3 mRNA downstream 271773 70302173 ~ 70329055 (-) True cdc40
XM_022665626.1 mRNA upstream 2128 70622015 ~ 70639926 (-) True naprt
XM_007255638.3 mRNA upstream 20585 70640472 ~ 70643325 (-) True c3h8orf82
XM_007255626.3 mRNA upstream 236863 70856750 ~ 70867662 (-) False brox
XM_007255625.3 mRNA upstream 236863 70856750 ~ 70867476 (-) True brox
XM_007255681.3 mRNA upstream 250976 70870863 ~ 70915650 (-) True tshr
XR_002649364.1 other downstream 1438924 69145308 ~ 69161904 (-) True sec63
TU42561 other downstream 1771808 68827985 ~ 68829020 (-) False fam84a
TU42459 other downstream 2509247 68091220 ~ 68091581 (-) True G31622
TU42346 other downstream 2738556 67855647 ~ 67862272 (-) True arpc5
trnat-agu_1 other downstream 2942177 67658579 ~ 67658651 (-) True trnat-agu_1
TU43425 other upstream 468988 71088875 ~ 71089461 (-) True G32343
trnat-ugu_81 other upstream 476744 71096631 ~ 71096703 (-) True trnat-ugu_81
TU43449 other upstream 518599 71138486 ~ 71142338 (-) True G32364
TU43617 other upstream 1359173 71979060 ~ 71982053 (-) True G32492
TU43689 other upstream 1621643 72241530 ~ 72242270 (-) True G32557

Expression Profile