RNA id: XM_007255653.3


Basic Information

Item Value
RNA id XM_007255653.3
length 3140
RNA type mRNA
GC content 0.43
exon number 15
gene id cdc40
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 70302173 ~ 70329055 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGATAGCCAGGACCCTCCTGACGTCACCCAACAACACTGAAGATGGCGGCGGTGCTCGGCTCCCTCGTTGCGTACGGCAGCGATTCCGATTCGGAAAATGAACCTGAGTCCAGCACGAGCCCGGAGAAAACACACCCGGACGCAGTGGCGCATCTCCAGCCTCTGAAATCCGACAGAACGACGAGTCTGGCTGTTCTCAATTCAGCGCCCGAGGTCGCTGTGAAGGAAGATGTTGAGACAGGCACACATTTGGATCCCTCACTTAAAGAGGTCAGCTACAACCCTACATATGACACCATGTTTGCACCTGAGtttggtccagttaatcCATTCAAGACACAGCAAATGGCTGCGCCGAGGAACATGCTCTCCGGTTATGCTGAGCCTGCTCATGTTAACGACTTCATGTTCGAACAACAGAGAAGAACGTTTTCCACATTCGGCTATGCATTGGACCCATCTGTGGACAACAGTCAGCTCTCTTCAAACAGTTATATTGGAGCAGTGGATgaggcagagaaaaaaaaagGTCTGACTGTTTTTGAAGCTGGCCCAAAGAAgggagagaagaggaagaaggtaAAAGGAGGGGATGCATCGGAGATTGACAGCTTCTTGGGACCCTGGGCCAAATATCAGGATGAAAAGGATGTTACCAAACCCTCAGAGgAGGAGCAAAAAGAGTTGGATGAAATTATAGCAAAGAGacaaaagaaaggaaggaatgAGGAAGAAGCACCTGCAGAGGAGAAGACCATTCTACACGTTAAAGATGCTTACGACTACCAAGGCCGGTCTTACCTGCACATTCCACAGGATGTGGGTATTAATCTGCGCTCAGCAGACATACCAGAGAAGTGCTATCTGCCCAAAAAGCAACTGCATGTCTGGACGGGACATACAAAGGGCGTCAGTGCTATTCGCTTGTTTCCTGTGTCTGGTCACCTGCTGCTTTCTAGTTCTATGGACTGCAAGATCAAGCTGTGGGAGGTGTACAGTGACCGGAGATGCCTACGGACATTTATTGGTCACAGTAAGGCAGTGCGTGATATCTGTTTCAATAACTCCGGTACTCAGTTCCTCAGTGCTGCTTATGATCGCTATCTCAAATTGTGGGATTCCGAGACTGGTCAGTGCATCTCCCGGTTCACAAACCGAAAAGTCCCCTACTGTGTAAAGTTCAATCCAGATGAAGACAAACAAAACCTGTTTGTTGCTGGAATGTCAGACAAGAAGATTGTGCAGTTTGACATCCGCTCAGGGGAGGTGGTTCAGGAATATGACCGTCACTTGGGAGCTGTCAATACAATCACGTTTGTGGATGAAAACCGGCGCTTTGTCAGCACCTCTGATGATAAGAGTCTGCGTGTGTGGGAATGGGACATTCCTGTAGACTTCAAATACATTGCAGAGCCCAGTATGCATTCAATGCCTGCTGTGACGCTTTCACCCAATGGTAAATGGCTGGCTTGTCAGTCCATGGATAATCAGATCCTTATATTTGGGGCTCAGAACCGGTTCAGGCTGAACAAAAAGAAGATCTTTAAGGGTCACATGGTGGCTGGATACGCCTGCCAGGTGGACTTTTCTCCAGATATGAGTTACGTGGTGTCTGGTGATGCTGATGGGAAGCTAAATATCTGGGACTGGAAGACCACCAAGCTCTACCACCGAATCAAAGCTCATGACAAAGTGTGCATCAGTGCTCTCTGGCATCCCCACGAAACTTCCAAGGTCATCACCTGCGGCTGGGACGGACAGATCAAACTGTGGGACTAAAAGAAGACTGTGAGAGAGTTGGAAAGTGGAACAAAGAGCCTGAACAGCATCTTTTTGCCAACTCATCATGTTTAATGCTTGGCATTGTACTCTACTCGTCCTGCAGCCCATTTGCCCTCCCTTGGCTTGCCCTTCTCAGGATGTTTGGTATTGGCTTTGTACAAAGACTAAAGTTTTAAAGGTTATGGGCTGGCATCCAGCCCCAACTTCtagttcattttttattatagacTTTCTCCGAGCTTGGAGATCTACTTTCCTGAGAGGTTCAAGTCTTTAATCTTCATTGAACAAGTCTGATCCAGATAATCAGTCCAGTTGTTGGTTAGATTTGGTCTCAGACAGAATGCTGTAAAAGAGTAGATCTCCAGTTCCTGCCCACTGCACTATTCTATTGTACACTAGCAGTGAAAGATAGGAACTTTGtgatttttctttcattattaaTGATGTTATTGAGTACTGAGGCaatgtttttcagttttaacaGATTCTTCAGTTTGTCATCAGATGTCTCTTTCTGaagataataaaacattttataatttttttcaagGGTTTGTAGTTATTGCTGGTAATCCAAGTCCAGTTTTTAATACTTGGTTTCTGATAATGAGTCTAATGATATAGTTCAGCTCTGGGCCACCCATGTTAAACGAAGGACCAGAGTGTTAATCCTGTTCCTGGTGAATTTCTCTGTGCTGCCTAAAAGTGGCTAGAACTTCTGAGCTCTTGAATGTTCAATAAACCACCATAACTTGGTTCTGAAAATGTGGTTAGTGTAAAGAGGCTGTGTCAAAAcattcaagaaaaaaaatgcaataacctaaaatgtaaatatctcTGTAGTTCAATTTGGAACCTGGGTACATAGTTCTCACTGTGAGGCATGCATAAGCCTTAAAAGTATCAGCAATCACTATGAAGAACGAAGGTTGGAATACAGTCAAAACTCACACATTCACTTTGGAATTGCGATCAAATCAGTATttcttaaagctttataaaaccttaatattttttttctccataaaTTGAACCTAAAACTTGCCTCTCACAGATATGTAATACTGGATTATTTtcctcaaaaaataaataaacaactcttgtctcattttttttctgtggttcagcatttgtgtgaaaaacatttgGGTCAAAAAAGTTTTGGGTCAAATTTAAGCAGAATTACAGAACATTCAAAAATTTTGTTGACTCACCAGTGTCCCTGTCTTACCTGTCTGAAGTAGTTTTAGGTATGAGGTGTACCACTTATGTCTAGGATGTGATGCCCACTGTTCATTTCAGTTCCATTTTAGAGCACAGCACAGATCACATATCAATAAATGATATTTTGTTAA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process

KEGG:

id description
K12816 CDC40, PRP17; pre-mRNA-processing factor 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42911 lncRNA downstream 91741 70208717 ~ 70210432 (-) True G31985
TU42919 lncRNA downstream 102436 70196744 ~ 70199737 (-) False G31990
XR_002649406.1 lncRNA upstream 38012 70367067 ~ 70371255 (-) True LOC111191251
TU43040 lncRNA upstream 155225 70484280 ~ 70485466 (-) True G32075
TU43045 lncRNA upstream 178402 70507457 ~ 70508403 (-) True G32080
TU43052 lncRNA upstream 185039 70514094 ~ 70520924 (-) True G32082
TU43048 lncRNA upstream 185464 70514519 ~ 70520924 (-) False G32082
XM_007255655.3 mRNA downstream 70144 70214994 ~ 70232029 (-) True slc22a16
XM_007255666.3 mRNA downstream 833098 69455687 ~ 69469075 (-) True cd164
XM_007255673.3 mRNA downstream 863623 69361081 ~ 69438550 (-) False sesn1
XM_007255672.3 mRNA downstream 863624 69361081 ~ 69438549 (-) True sesn1
XM_007255674.3 mRNA downstream 935460 69361081 ~ 69366713 (-) False sesn1
XM_022665568.1 mRNA upstream 123891 70452946 ~ 70472584 (-) True mia3
XM_022665570.1 mRNA upstream 123891 70452946 ~ 70472581 (-) False mia3
XM_007255642.3 mRNA upstream 256840 70585895 ~ 70588997 (-) True hlx
XM_007255643.3 mRNA upstream 256840 70585895 ~ 70588987 (-) False hlx
XM_007255641.3 mRNA upstream 271773 70600828 ~ 70619887 (-) True rhpn1
XR_002649364.1 other downstream 1140269 69145308 ~ 69161904 (-) True sec63
TU42561 other downstream 1473153 68827985 ~ 68829020 (-) False fam84a
TU42459 other downstream 2210592 68091220 ~ 68091581 (-) True G31622
TU42346 other downstream 2439901 67855647 ~ 67862272 (-) True arpc5
trnat-agu_1 other downstream 2643522 67658579 ~ 67658651 (-) True trnat-agu_1
TU43425 other upstream 759820 71088875 ~ 71089461 (-) True G32343
trnat-ugu_81 other upstream 767576 71096631 ~ 71096703 (-) True trnat-ugu_81
TU43449 other upstream 809431 71138486 ~ 71142338 (-) True G32364
TU43617 other upstream 1650005 71979060 ~ 71982053 (-) True G32492
TU43689 other upstream 1912475 72241530 ~ 72242270 (-) True G32557

Expression Profile