RNA id: XM_022665476.1


Basic Information

Item Value
RNA id XM_022665476.1
length 7154
RNA type mRNA
GC content 0.45
exon number 26
gene id LOC103044978
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 69634635 ~ 69761975 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGTTGGCTGATCCTGGAGGGGAGAAATGAAGAAGTTCAACATCCGGAAGGTGCTGGACGGCCTGACGGCCGTGTCGTCCCCCTCGCCGTCCCCGCAGTCCGGGGCTAAGGAGAACGACTTCATCATCCCGGAGACCATCCAGTCCGAGCACTTtcagctgtgcaagACTGTCCGCCATGGCTTTCCCTATCAGCCGTCCTCCATGGCATTCGACCCTGTCCAGAAAATCCTCGCCATTGGGACTCAAAGTGGAGCTTTACGATTATTTGGTCGACCTGGTGTGGAATGTTACTGTCAGCACGAGAGTGGAGCAGCCGTCATCCAGCTACAGTTCCTTATAAACGAGGGGGCACTAGTGAGCGCTTTAGCAGACGACAGTGTTCACCTATGGAACCTGCGACAGAAGAGACCGGCTGTGCTCCACTCGCTGAAGTTCAACAGGGAGAGgATAACGTTCTGTCATCTGCCTTTCCAAAGCAAGTGGTTATACATCGGCACAGAACGAGGAAACATCCACATCGTAAACGTAGAGTCGTTCACCCTCTCAGGATACACCATCATGTGGAACAAAGCCATTGAACTGTCCTCCAAGGCCCACCCTGGCCCTGTCGTCCACATAAGTGATAACCCAATGGATGAAGGCAAGCTCATAATAGGATTTGAGTCTGGCATCGTGGTGTTGTGGGATTTGAAATCAAAGAAGGCTGACTACCGCTACACTTATGATGAGGCGATCCATTCTGTGGCCTGGCACCACGAGGGGAAACAGTTCATCTGCAGTCACTCAGATGGCACACTGACCATATGGAATATAAAGTCCCCAGCCAAGCCTGCACAGACAATCACCCCACATGGAAAGCAGCCCAAGGATGGAAAGAAGCCAGAGCCATGCAAACCCATTCTCAAAGTAGAGTACAAGACGACGAGAGCAGGTGAACCATATATGATCCTGTCTGGTGGTTTATCGTACGACACGGTGGGTCGGCGGCCATGTTTGACTGTAATGCATGGGAAGAGCACTGCAGTGCTTGAAATGGACTATCCCATTGTAGACTTCCTCACACTCTGTGAAACGCCATATCCTAATGATTTTCAGGAACCTTATGCTGTAGTGGTCCTTCTAGAAAAGGATTTAGTTGTTATCGACCTTGCACAAAATGGTTATCCTATCTTTGAGAACCCGTACCCCTTGACGATTCACGAGTCTCCAGTGACGTGTTGTGAATATGTTGCTGATTGTCCCGTGGACCTCATACCTGCACTTTACTCAGTTGGCTCCCGCCAAAAACGACAGGGCTACAGCAAAAAGGAATGGCCTGTAAGTGGTGGAAACTGGGGCCAGGGCACACAAAGCTAtcctgaaataataattactggGCATGCTGATGGTTCAGTTAAGTTTTGGGATGCCTCTGCAATAATGCTCCAAGTGCTGTACAAACTGAAGACAGCCAAGGTGTTTGAGAAGGCGCGCAGTAAGGAAGAAAAGCCAAGCACAGAGATTGTGGATGAGGATCCGTTCGCCATCCAGCTCATGTCATGGTGCCCGGACAGCCGCATGCTGTGTGTAGCCGGAGTGTCCGCCCACGTCATCATCTACAGATTTAGCAAGCAGGAAATCACCACCGAGGTTGTACAGTTACTTGAAGTCAGATTGCAGTATGAACTGAATGACCTAGATTCACCAGAAGGGGGTGGGTACCAGACACCAGCTCCTCCCACTCCAAGCACCTCCCCTAGCCCACAGACCTCCGGCCCCCAGACACACCATTCTACCAGCAGCAACTCTTCAGATGGCATAAGAGATAATGTGCCCTGCCTGAAGGTACGCAATAGTCCTCTAAAGCAGTCTCCAGGCTATCAGGTAGAATTGGTGGTGCAGTTGGTGTGGGTCAGCGGAGAGCCTCCCCAGCAGATAAGCAGCCTGGCTATCAACTCCTCATATGGCTTGGTGGTTTTTGGCAATACTAATGGCCTGGCAGTGGTAGATTACCTCCAGAAGACTGTTCTTTTGAATCTGAGCACCGTGGAGCTGTATGGATCCAACGACCCATACCAGAGGCAACCCAGATCACCTCGCAAGAGCAGACAACCTTCTGGAGGGCTGTGTGACATCAACGAGGGCTCAGCCACGTCGGAGGATCGCTGTAAATCCCCCACCTCAGcaAGGATGTCACGGAAATTAAGCTTGCCAACTGAGCTAAAGCCAGACTTGGTCCTACTCTCTGTATGTCCTCCGCGGGGTGCCGTACCCCTAGACAACAGGGACAACTCCTTCAGCCGCTCAAGAAGTTCCAGTGTGACCAGCATTGATAAAGAAGCACGGGAGGCCATCACATCATTCTATTTCTGTGAGACGTACTCGCGCAAGACGGACAGCACGCTGACACCAGCCCTGTGGGTTGGCACTTCCTTGGGCACtgtcctctctatctctctgagCATGCCGCCTGCTGGAGAACAGAGGCTACTGCAGCCAGTCATTGTCTCACCCAGTGGTACTCTCATCAGACTAAAAGGCAGCATCATCCGAATGGCCTTCCTGGATGCCACAGGGTCCCTACTTCCCCCGGCTTCTGAGCTGTGGTATGAACCCAATGCCCCGGCCAacggagaagagagagaaagggggagaaAGAGGCGTCCAGTGTCGGTCTCACCATCCACCTCACAGGAACTGAATGAGCACCAGTATGCTCTTGTGTGCTCAGAGAAACAGGCCAAAGTCATTGCCCTGCCCTCGCAAAACTGCATTTTCAAGCACAACATCACAGAGACGTCCTTCGTGCTGCGGGCTGATGTGGTGCAGTCAGGGTCTGGCATCTGTTTGACCTGCTTTTGCGCAAACGGACACATTATGACCCTCAGTTTACCTGGGCTGAGACCATTACTGGATGTCAACTACCTGCCACTGACAGACATGAGGATAGCCAGAACCTTCTGCTTCACTAATCTAGGTCAGGCCATGTACCTGTGCTCCCCCACTGAGATTCAGAGGATAACCTACAGCCAGGATGTCTGTGAGAACCTGCAGGAGATGCTTGGTGAGCTGTTCACTCCAGTGGAAACGCCGGAAGCTCCAAACAGGGGATTCTTCAAAGGTCTTTTTGGAGGAGGAGCTCAGTCGCTGGACAGAGAAGAACTCTTTGGGGAGTCAGGTGCGGGGAAGGCGTCCAGGAGCCTTGCCCAGCACATTCCTGGCCCGGGGGGCATTGAAGGCATGAAAGGGGCAGCATCAGGCATTGTGGGTGACCTGGCTCGAGCCCGGATAGCACTGGATGAAAGGGGGCAGAAACTGAGTGAGGTGGAGGAGAAAACAGCAGCAATGATGGCTAGTGCCGACTCATTCTCCAAACACGCCCACGAGATGATGCTGAAGTGTAAGGACAAGAAATGGTACCAGTTCTAATCTGTGGACCAGTACAGAGCCCAAAGGGACTCAACCATCTTCCTACAGAGCATCATCTTCCTCTCATCTGTTCCACCCTCCCTTCAATCATCTCTTCTTTGCTGGAACAGTGGGATTCCTCGTTCTTTTTTGGcacaatgtttaaaactgtgttgACCTCAGTCCCACTGTAGGAACTGCATGGGAAAAGATGTGTGAAAGATGGACCTCATCTCAAAAAAGATACAACAGAACCACTACGACAGTGTCTGCCTTTTTCGTTGTTTTTGTTTGGTTATTATTgccatctctctttctgtggcAAATCATCTTGAGGGCCCTGCAGTTCCATCTCCTCATATTCATGCTGTCCTTTCTGCGTTTACCTCCGTCCTTCCCACAAGGAAACCAGTAACATGttggagggggtgggggggacgggggagagacaaacagaaccagaataataatgaaaaaaatgaaataaaaagaacactgttaaaaaaacgaACGTgggaaaagaaaacacatataCATAGCTCTATATAAATCTCTATAAAACTACATAACTGATCAAAGTCATATTTACTCTTGACAGCGTACATCAAGAGGACAGCTCACTAGAGCAAAGTGAGCAGAACTTTTGAAAAGCGCCTGTTTACAGGAAGTGATGATGTGATCGTAATGGGGGAGACGGGCTGTTTGACTGAACCCAAGATTTGCTCTCCCTCCCCTTTATCCAGACTCCTCATAGTTCAGTGTCATATTTTTGCATATTACACCAACACTCCTCCTCTGTTTGTCTGTGGCCCTGTAGGTTCCTTTcctcctatttatttatttcctctttatttttttatttaacaaggAACTAACACAAAATGTAAcgtttaatatatattgtaaatgtctAATTGAATATTGAAAGTTTTTTGACTGATATTTTGATTCACATTTGGgaattgtttattgttgatatcAGTACAATAATACTTTACATTAAAGTACCATCTCCAAAGGGTTTATAATTAGTTGATAGATAATATAGATATAAGTAATTATAAAGAGTAATATAGATCTATGGAAATTGTACATTGACTACTTATAAacctagtttaaaaaaaagggaaaaaatatttttagatggTATTTTCATGTGATTAGTTGTTCAGACATCCAGTGTTGACTTCCAGTGTAATCTCCCATGAACTTCACTGCAGAAAAGGGCTGGTTTGGTTGAAAATAGGGGGATCTTGATATGGAAAGTTATGGCACTACCAGACTGGAAATCTATCATCTATTATTAGGGATGAAACCTCTAGTACAAATGTAACACAATCAGACCTCTGCTCTGGAAGTGAAGCGTTAATGTGAAGGGATTTTTGTGTATGCTTCTTGGCATCTTTTTGCCAGGTGCCCGGTATGCTCTGGCTGGAGTTGTTCCctatttttgttagtttgttgtAGTTTCAGATGGTTGCACTTTGCTCTACATATCTCATTTACAAGTGCTGGCTGTTTTGTTTGAGATAGGAGCACTTATGGTATATAATTGTGGATAAAAAGGACCTGCGCTGTAGGTCTGGGTATTCAGGAATCGGTATTCTATGTTTGGTCCTGTACGTTCATCATTCTGGCCTTCAAAGTCCACTGAACTTCAAGTGACGTCTGGATATTGTTTTTGTGTGGCCGTCAACAAATGAAATGTGGTGTACACTTCTTGGCGGACTTTGCTTGAAGATCAGTGTTTGACTCCAGGATCTGCTGTCTGCTCACTGTTGGAAGATAAACTGGGCCTTACACCAGTGACACATGGGTAATGTAGTCTGTGAATCTTCCCGATTGGACTCACAGTCCACGGCTTAAGGTCACTTTGGGATGGAATCTTCATCTTGTTATTAAAGCCATACCAGCTGTTGAAATTTTATTTGAGCCAGTGTGTGCACAGTTATCGTGGACAATTGTATATTCaaatatgaaagaaaaaaaaaacaaaattacagcAATCTCTTCAGAATACACTGCTCCAATGCTCATGATACTGTACTTTCAGTGTGATAATATGAATATGTTTGATCTAATTTATAGTGTGCAAGAAAAATGCTGCTATATATGTTTGTGCATAAGAAGACTCATTTGTCTGTCCggattttgattttgatgttttgagctctctctctttttctctctctctccctctctttctatttccctcttgctctctctcgcttgcctctctctctctcttgcctttCTGCCCAAGTGTTTTTTTgccattctgtaaataaacaagtGTGACAATCTGGGACCATAACACAAAGAGCGGGAGCGGATGAATCAGCGCAGAGACAGTTGCCATATCTTTTTAAACACCAAAGATTTATTTTCGTTACGTTGTGTAGTTCACTGTTACACCTATCTGTGCCCGACCTCTCTGGAGCTCATTCGTTCTACTCTGAGGTCTCACCTGACCTTCTTGGCCTTGTGCCAACAAAACAAAGCCTTTTGTGTTTATCCaacttcttttaaaaaaattagaaaaaagattggataaattaattaaagccAACCTGTTTTAGACTATAAATAGTTCTAGGTGTTCGATTCTGTGTGTTAGTTTTAAATATGCTATCATTTATCTCCATCCCTCTTTATTTGCCATTCCTCATCGATTCAGTCAGGCTGTTTAATGTGCCAGATTTTCCCCTTCTGTCGTTTTATTCATTGTAAaacactttgtgtgtgtgtgtgtatgtgtgtgtgtgagagagagtgtgtatgccTTGAAAGAAAGGGACTGTGAGCTGACTGAGACTTGGTGGACAATAACACACtgtcagtcctgttactgagcACATTTGTGTGTCTTTACATAGTGTTTTTAGCTTATGAACTGTCTACATTTATGGAATGGTAAAGATGGCCATGGATTTAAAGGAgagtgtattagagtgtgtgctCTGACCGTGTAATGCTGTGCATGTCTATAGACAGAGAGTCTGAAGCTGAAGACTTCAGAGTGTGCCAAGAGGTTTTAGCACAAATAAACCAAATCCAGCGAAGACTGGTGAGACTGACTGTGATAGATGGATAAAGTTTGTGCAGAATCTGCTGTGTCTATTTAAGGACTTGGAAGTCATTATGGGAAAACCTGGATGTCCTTGAGCCCCACTATCATTGTCAATCAATAATATGATCTGTGTGTATGAgtaaatgtttcaataatatCAAGTACAGTGTTCGAGCCACTCTCAGGCTGTGTATCCTCTCAAGCCAGTTTTCAGGTCGCACCTCCGGTTTGCTTCATAACGATTCATAACGATTTAGTATGCACTGTCAGTGTGGACGTCGGTTGTTAGCCCTTTGTAATcttccaagaaaaaaaaatacttgaggAAAATAAGATGTCTGATATTTTTCCTGTCTCTTGTCCTGAATTttgattaatttagtttttctttttttattttaaagaaaaagaatcAGTTTTATCTTGTCTTTTGGTGAACTGTCAATAATGTCACCAGAACATTGTATCTTGATCTAGTATACTTCTGAAGAAGATCTCTTTCATCCTCCATCTTCTGTCCTCCAAATAACGGTTATCAGTGGGTTGCAGTATTTTTTCTCATTGTAGCCAATTTTCTTGTACAGTTTTATGCAAATTTCACATGGATGTTTATGAATATctgctgccacaaacgatttaGAATTTCTGTAGATAGAAATTACTGTGCAATgggaaataaaaatgatataaaaaca

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42632 lncRNA upstream 87931 69455741 ~ 69546704 (+) False G31758
TU42631 lncRNA upstream 165539 69455741 ~ 69469096 (+) True G31758
TU42575 lncRNA upstream 486611 69007441 ~ 69148024 (+) False G31718
TU42847 lncRNA downstream 343603 70105578 ~ 70106122 (+) True G31932
TU42853 lncRNA downstream 423636 70185611 ~ 70187725 (+) True G31938
TU42926 lncRNA downstream 454256 70216231 ~ 70217718 (+) True G31993
TU42954 lncRNA downstream 615722 70377697 ~ 70379706 (+) True G32014
TU42963 lncRNA downstream 695345 70457320 ~ 70459226 (+) True G32021
XM_007255664.3 mRNA upstream 16912 69554538 ~ 69617723 (+) True adgb
XM_022665452.1 mRNA upstream 82852 69524031 ~ 69551783 (+) True LOC103025939
XM_007255663.3 mRNA upstream 112020 69475842 ~ 69522615 (+) True LOC103045488
XM_007255667.3 mRNA upstream 183893 69441443 ~ 69450742 (+) True cep57l1
XM_022665489.1 mRNA downstream 5425 69767400 ~ 70100366 (+) True sash1
XM_022665493.1 mRNA downstream 5425 69767400 ~ 70100366 (+) False sash1
XM_022665514.1 mRNA downstream 5437 69767412 ~ 70100366 (+) False sash1
XM_007255656.3 mRNA downstream 5440 69767415 ~ 70100366 (+) False sash1
XM_022665507.1 mRNA downstream 242613 70004588 ~ 70100366 (+) False sash1
TU42576 other upstream 472752 69145018 ~ 69161883 (+) True G31718
TU42555 other upstream 807063 68826643 ~ 68827572 (+) True G31702
TU42422 other upstream 1611701 68020040 ~ 68022934 (+) False LOC103035359
TU42315 other upstream 1801420 67831820 ~ 67833215 (+) False hmcn1
TU42187 other upstream 2136938 67497203 ~ 67497697 (+) True G31407
TU42854 other downstream 434950 70196925 ~ 70199742 (+) True G31939
TU42855 other downstream 434950 70196925 ~ 70199742 (+) False G31939
TU42856 other downstream 434950 70196925 ~ 70199742 (+) False G31939
TU42949 other downstream 541061 70303036 ~ 70329028 (+) True G32009
TU43083 other downstream 877108 70639083 ~ 70639739 (+) False G32105

Expression Profile