RNA id: XM_022665386.1



Basic Information


Item Value
RNA id XM_022665386.1
length 1968
RNA type mRNA
GC content 0.44
exon number 13
gene id afg1l
representative False

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 69243718 ~ 69279965 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GAGACACCAGCAAACAGCCAATCGTAACATTTTGCGATGGTGTGTCGTTGAGCTATACCTTACCCTTTttgaaaatatgatttttatttttttttctttacgaCTCGAAATGAAGATTATCTGGCTATGGTTTTGTATCGTATACTATGTAaccatattttaatttgttgtaaaataaaaaaaaatatatgtaaaaacgGAGCTGGATGAACGAGTCACATAAAGTCGTTGGGGTTTGAAGGAAGATGGCAGCGCCCTCGTCGAGTTTGATAAGGAGGTTTATTCTGagttattttaaacacagacaGGGCTCCAGAAGAAGGTGCTGCACATTATTTAAACCGACAAGAGGACATGCATCATTATCAACAATCTCACATGTTACCAAGCACAGTGGACCCATTGCTCACTACAACAACCTGGTACACTCTGGATTGCTCCATGAGGACATTCAGCAGAGAGCTGCACTTTGGCAGTTAGAGGAGCTACATCGACTGATAGCAGGGTACACCAATATTCCACTCGATTTATCTTTTACACAGCCAGGGGAGAACAGACACAGTAGCTTAAACTCAGACCCGTACAATGTCTTAGAAGATTCCAAGAATAGATTGATGACAAACACAAGGGCAAAGGATGGACAAGTGACACACCGGGACTCTGATGTTACATCAGTAAAACAAGGAGCAGAAGAAGTAGATGAATGCAGTGTAGAAAAGGCACCTGTAAAGCCACCTCCCCCTCGTGGATGCTACATTCATGGTGGTGTCGGGACTGGAAAAACAATGCTGATGGATCTGTTTAACTCTCATGTGACGAACAGCAGGAAAAAGAGGCTTCACTTCAACAGCTTCATGTTAGATATTCACAGACggATCCATCGACTGAAACAGAGTCTACCAAAACGACAGATAGGCAAAATGACAATCTACGATCCCATTTTTCCTGTTGCCATGGAGATTGCCTCAGAAACCTGCCTCTTATGCCTGGATGAATTTCagGTGGTGGACATTGCTGATGCTATGATTCTGAAGCAGCTTTTCAGTGGGTTGTTTTCATGTGGTGTGGTGTTAGTGGCCACCTCCAACCGGCCACCAGAAGaACTCTACAAAAACGGGCTTCAGAGAGCTGCTTTTGTGCCTTTCATCGGCGTGCTCAAGGAAAATTGCCGCACTCTCAGTTTGGACACTGGAATAGACTATCGCAGGAGAGAGATGTTGCCTCCAGAAAAATACTATTACATATCCAGCGAACCCGATGCAGAGGCCGCCGTGAATACGCTGTTCGATGAATTGGCTTACAGACAAAATGATGTAATGAGGCCTAGAGTGCTGACAGTGCAGGGCAGACAGCTGACCCTTAGCCGCACCTGTGGAACCATCGCAGACTGCACCTTTCAGGAGCTCTGTGACAGGCCATTAGGAGCAAGCGATTATCTGGAGCTAGTGCGGCACTTTGACACAGTCATCATCCGTAACGTGCCTCGATTGAAGGTTGGACTGAAAGACCAAGTCAGGCGTTTCATTACACTTATTGACATCTTCTATGACCAGAAGGTGAGAGTAGTGGTGTTGGCTGAGGCccctctgcagctcctctttGTTGGGGGCCCACTGTCTGGAGAAGAAGAGCGCGACCGTCTGATGTTGGATGAGCTTGGCCTGACCAATgaGTCATGGAAGCGATTGACACTATTCACAGCTGAGGAAGAGATTTTTGCCCTGCAGAGGACACTGTCTCGACTTACAGAGATGCAGACAGAGCAGTACTGGCTTCAAAGAGATGGAAGTTGAATGTGAAAATAGCACACAGAAACCAGTGTGTATTCTTGTCTTTGCAGGGGTATTTCCATTGACTTTTGTGTTGTCTCTGGGGAAATATTTaagctctttttttaataatggaaTGTTTTCAGAAAAATCCTTGTGTAAGGATTAAGACAAATAAAATCAACAGGCTACAGTTTAA

Function


GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU42575 lncRNA upstream 95694 69007441 ~ 69148024 (+) False G31718
TU42592 lncRNA upstream 143156 69097291 ~ 69100562 (+) True G31724
TU42588 lncRNA upstream 203794 69038510 ~ 69039924 (+) True G31720
TU42572 lncRNA upstream 276908 68966479 ~ 68966810 (+) True G31715
TU42494 lncRNA upstream 583611 68625289 ~ 68660107 (+) True G31648
TU42631 lncRNA downstream 175776 69455741 ~ 69469096 (+) True G31758
TU42632 lncRNA downstream 175776 69455741 ~ 69546704 (+) False G31758
TU42847 lncRNA downstream 825613 70105578 ~ 70106122 (+) True G31932
TU42853 lncRNA downstream 905646 70185611 ~ 70187725 (+) True G31938
TU42926 lncRNA downstream 936266 70216231 ~ 70217718 (+) True G31993
XM_022665374.1 mRNA upstream 27855 69203834 ~ 69215863 (+) True nr2e1
XM_022678508.1 mRNA upstream 519075 68352427 ~ 68724643 (+) True nbas
XM_007233636.3 mRNA upstream 1201350 68023937 ~ 68042368 (+) True ppp4r3a
XM_007233635.3 mRNA upstream 1220778 68020042 ~ 68022940 (+) True LOC103035359
XM_015601389.2 mRNA upstream 1224727 68004234 ~ 68018991 (+) True LOC103035042
XM_007255675.3 mRNA downstream 6050 69286015 ~ 69321707 (+) True foxo3
XM_007255670.3 mRNA downstream 58576 69338541 ~ 69359553 (+) False armc2
XM_007255669.3 mRNA downstream 58601 69338566 ~ 69359553 (+) True armc2
XM_007255667.3 mRNA downstream 161478 69441443 ~ 69450742 (+) True cep57l1
XM_007255668.3 mRNA downstream 161482 69441447 ~ 69450742 (+) False cep57l1
TU42576 other upstream 81835 69145018 ~ 69161883 (+) True G31718
TU42555 other upstream 416146 68826643 ~ 68827572 (+) True G31702
TU42422 other upstream 1220784 68020040 ~ 68022934 (+) False LOC103035359
TU42315 other upstream 1410503 67831820 ~ 67833215 (+) False hmcn1
TU42187 other upstream 1746021 67497203 ~ 67497697 (+) True G31407
TU42854 other downstream 916960 70196925 ~ 70199742 (+) True G31939
TU42855 other downstream 916960 70196925 ~ 70199742 (+) False G31939
TU42856 other downstream 916960 70196925 ~ 70199742 (+) False G31939
TU42949 other downstream 1023071 70303036 ~ 70329028 (+) True G32009
TU43083 other downstream 1359118 70639083 ~ 70639739 (+) False G32105

Expression Profile