RNA id: XM_007255681.3


Basic Information

Item Value
RNA id XM_007255681.3
length 2751
RNA type mRNA
GC content 0.45
exon number 10
gene id tshr
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 70870863 ~ 70915650 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTACAAAGTGGTAAATTTCTACAAAACTTTTAGAAAACTTTTTTGTCGGATTTTTCAGGTCTGACTCTTACCGCTAAGTCATTAGTAGTCACGCGCATGAACATGTAAGTGCGAATAGTTTAGCCGTGTTTTGGCTGAAGGCGGCTGTGTGCAGCGCAGTGTCCGGAGGCGATGTTCCCCAGGGCGCCGCGCTGGCGCTCAGAGCACGCTTCACTGCTGCTGCGCAGGACACTCATGATGAAACTCTCTGAACACGAGCATTCCTCCAGCTCTCAGAGAGAACTGAGAGACCCCCTCCCACTCACAGTCCGAGAGAAATAACCGCAGATTAACCTCTTCATCCGGGGATCACTGTGCGCATTCACCCTCTACCTTCATAAACTGGATCTTGCGAAAGACACTGGAGATGCGAGGATTAGGGTCCGCGCTGGTAACTCTCTACAGCCTGTTATCTGTGGCTCTCGGCGGAGACTCTGATCTGTGTCCGGATGGATGTGAATGTTCAGAGTGGAGAAGCTTCTCTGTCTCATGTAGTGAAATAGGTGCTATACCCATGTTTCCTGCCAAAACCGAGACACTGCGTCTCTACGAAACAAGACTGACTTCTGTGCCTAAGGATGCATTTGCCAATATGGTGAACATCTCAGTAATATATCTATCAGTGGATGTTTCTCTGAGGAGGATAGAAAAACATTCGTTTTATAACCTAAAGAAGATCACACATATagAAATAAGAAACACCAGACGTCTGACAATCATCCATCATGAGGCTTTTAAGGAACTCCCAAATTTGAAATACTTAGGTTTGTGCAACACTGGTCTTACCGTGTTCCCGGACCTGGCCAGGATTCACTCTGGTGATCCACTCTTTATGCTaGAAATAACTGATAATCTTTACATCACTGAAATTCCTGTCAATGCATTCCAAGGCATTTCCAATGACGTACTAACACTGATGTTATATAGTAATGGCTTTACTAAAATTCTGCACCATGCCTTCAATGGAACAAAACTAGATTCTGTATACCTTCACAGAAACAAGCAACTCACTGGACTTGACGACAGCATGTTTGCAGAAACCATCAGTGGTCCAGTGCTTCTtgatgtTTCAGAATCTGGCATCACCTCCCTTCCAACAAGAGGACTGGAGTCCCTGCGGGAACTAAGTGCTCGGAATGTTTGGGCTCTCAAAAAGCTTCCACCAGTCCAAAACTTCAGAAGTCTTACCATTGCTGATCTGACGTATCCAAGTCACTGCTGTGCTTTCAAAAAtcttaagaaaaagaaaggGATCCTGGAGGATGTAATTTGTAACTTGACTGCCATGTACAACCACCATCATAAGAGATCCACTGGCATGCAAGTAGTCCCAGCCTTCCATGGTAGTACAAACCAAGGCGTTGACTCTAACATCTGGAATGTGGACACCTACGACCATCAGGATTTCCACGGTAGTCTGAATTACCAAGCCTCTATTGGCGGACAccctgatgatgatgatgtgggCTTTAGGGACACACTAAAGAACACCCAGGGGGACACTCTTCAGGACTTTGACAGTCCCTATGACTATGTTGTGTGTGAGGATGGAGAGCAGGTTTCATGCTTCCCAACTCCTGATGAGTTCAACCCATGTGAAGATATTATGGGCTTCAGTTTCCTGAGAGTGTCTGTTTGGTTTGTCAGTCTTTTGGCTGTATTGGGGAATCTTTTTGTTCTCTTTGTGCTTCTTACAAGTCGCTTTAAACTTTCTGTCTCCCGGTTCCTTATGTGCCATCTGGCCTTTGCTGACTTATGCATGGGTTTCTACTTGCTTCTCATAGCCTCGGTGGACCTTTACACTCAGTCAGAGTACTATAATCATGCTATAGACTGGCAGACAGGGCCCGGGTGCACCCTTGCTGGTTTCTTTTCTGTCTTTGCCAGTGAATTATCAGTTTACACACTGACTATTATCACTTTGGAGCGCTGGCATGCCATTAATTTTGCAATGCGCTTAGATCAAAAGCTGCGTATGTCCCATGCCTGTGCCGTCATGTTTGGAGGTTGGCTTTTCAGCCTTCTGCTTGCTCTAATGCCTGTTTTAGGGATTAGCAGCTACCAGaaggtcagtatctgtctgCCCATGGACACTCCTTCGCTTGTGGACCAAATCTACATTCtctttctgcttgtttttaacattttagccTTTGTGGTCATCTGTTTTTGCTACATCAAGATATACTGTACTGTGCACAACCCCACCTACACCTCAGCCAGAAAAGACACTAACATTGCCAAGCGCATGGCTATACTTATTTTCACAGATTTTATTTGCATGGCACCCATCTCTTTCTATGCTTTGTCAGCTGTGCTGGACCACCCACTCATAACCATTTCTAACTCCAAGATCCTGCTGGTGTTATTCTACCCACTAAACTCCTGCGCTAATCCTTTTCTATATGCTATTTTCACCAAAGCCTTTCGCGGTGATGTATTTATTCTTCTCAGTAAAGCCGGCATATGCGAGCGGCAAGCCCAGCTGTTCCGAGGGCAAACCATCACTTCCAAAGCAAGTAGTGGAGGCACAAACAggcgacagagagagacaagatCTCTTGAGAAAACTCCAATTAACACGCTGGAGTTTTCAGGCCAAGAAAGAATGAGGGAAACATaaacctattttttattttattgtacacACATTTCTACATACagaatataagccatttattgcTGAGTTGTGCCTTTATAAGACAGTTTATG

Function

GO:

id name namespace
GO:0038194 thyroid-stimulating hormone signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004996 thyroid-stimulating hormone receptor activity molecular_function

KEGG:

id description
K04249 TSHR; thyrotropin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43350 lncRNA downstream 53160 70817272 ~ 70817703 (-) True G32285
TU43342 lncRNA downstream 76999 70793302 ~ 70793864 (-) True G32279
TU43336 lncRNA downstream 93013 70777149 ~ 70777850 (-) True G32275
TU43322 lncRNA downstream 120045 70748226 ~ 70750818 (-) True G32267
TU43317 lncRNA downstream 132384 70736265 ~ 70738479 (-) True G32264
TU43388 lncRNA upstream 2331 70917981 ~ 70992589 (-) True LOC103033556
TU43391 lncRNA upstream 49366 70965016 ~ 70973557 (-) True G32316
TU43405 lncRNA upstream 110039 71025689 ~ 71027654 (-) True G32327
TU43407 lncRNA upstream 110039 71025689 ~ 71028881 (-) False G32327
TU43404 lncRNA upstream 110853 71026503 ~ 71029286 (-) True G32326
XM_007255626.3 mRNA downstream 3201 70856750 ~ 70867662 (-) False brox
XM_007255625.3 mRNA downstream 3387 70856750 ~ 70867476 (-) True brox
XM_007255638.3 mRNA downstream 227538 70640472 ~ 70643325 (-) True c3h8orf82
XM_022665626.1 mRNA downstream 230937 70622015 ~ 70639926 (-) True naprt
XM_007255641.3 mRNA downstream 250976 70600828 ~ 70619887 (-) True rhpn1
XM_022665767.1 mRNA upstream 2826 70918476 ~ 71043182 (-) False LOC103033556
XM_007241837.3 mRNA upstream 138795 71054445 ~ 71060960 (-) True snw1
XM_007241836.3 mRNA upstream 161460 71077110 ~ 71086957 (-) False LOC103038639
XM_007241834.3 mRNA upstream 161460 71077110 ~ 71086957 (-) True LOC103038639
XM_007242523.3 mRNA upstream 183952 71099602 ~ 71105819 (-) True ccnk
XR_002649364.1 other downstream 1708959 69145308 ~ 69161904 (-) True sec63
TU42561 other downstream 2041843 68827985 ~ 68829020 (-) False fam84a
TU42459 other downstream 2779282 68091220 ~ 68091581 (-) True G31622
TU42346 other downstream 3008591 67855647 ~ 67862272 (-) True arpc5
trnat-agu_1 other downstream 3212212 67658579 ~ 67658651 (-) True trnat-agu_1
TU43425 other upstream 173225 71088875 ~ 71089461 (-) True G32343
trnat-ugu_81 other upstream 180981 71096631 ~ 71096703 (-) True trnat-ugu_81
TU43449 other upstream 222836 71138486 ~ 71142338 (-) True G32364
TU43617 other upstream 1063410 71979060 ~ 71982053 (-) True G32492
TU43689 other upstream 1325880 72241530 ~ 72242270 (-) True G32557

Expression Profile