RNA id: XM_007256410.3


Basic Information

Item Value
RNA id XM_007256410.3
length 1414
RNA type mRNA
GC content 0.48
exon number 7
gene id yipf6
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 36611263 ~ 36619989 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACAGGCTGATGACGTAGCGACATCCGCGTCGTCTGGAAAACATGGCGGAAGTGGAGGACGTAAATAAACCCCTGtttgCAGGGTTGTCTGATGTGTCGATTGCAGAGGACATTCCAGTAGAAGGAGACATCGCTGTGCCACTGAGCTCTCGGAATGCAGACGATGAGATTTCCACACTGGACGAGCCTGTAAAGGACACTATCtTGAGGGATTTGAAAGCAGTTGGTCAGAAGTTTGTTCACGTACTTTATCCAAAGAAAAGCTCTGCTCTGCTTCGTGACTgggATTTATGGGGGCCTTTACTGCTGTGTGTTACCCTGgcactGATGCTGCAGGGTGGATCAGCTGACAGTAAAGATGACGGAGGGCCGCAGTTCGCTGAAGTGTTTGTCATTGTCTGGTTCGGCTccatcatcatcaccctcaACTCCAAACTGCTGGGAGGAACCATATCATTCTTCcagagtctgtgtgtgttgggttatTGTATCCTACCTCTGACGGTGGCTATGCTGGTTTGTCGGCTTGTACTCCTCGGCTCGTCAGGATTGGTCAGTTTCATCATTCGGCTGGTTGTGGTCTCCGCCTCCTTCGGCTGGTCGACATTCGCCTCTACAGCCTTCCTCGCAGACAGCCAGCCGCCCAATAGAAAAGCTCTAGTGGTCTACCCTGTGTTTCTCTTCTACTTTGTGATTGGCTGGATGATCCTGACGTTCTCTCCATCTCAGTAACTGTTGGCCAATCAGCAAACAGGACACAAACCGAAGCTCCAGCAGGCCGGATCGGTGTCAGGCCATGATTGGATGGGACAGAGGGAAGATTTGGTCTTTTTTTCTTGGAGGTCCAAAGGGAATGGACGATCCACCTGCTTTCATGAATTCCACCAGGCTTTCTTATACTTTGCCCTCATCCCTTATTCTACTGGGTGgttggatggacagatggagggagaagaagaagacactGAGCAGAACTGGTGTTTGATTTTCTGCTTCTCAGCCCACATCTTTCTACTTTCATACTAATCATTAAAACTAAATGATcatagaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgcctgTTGAGGACCCTTTTGCATGTCGGCATAGTTCATACATGGCTGTAGTGCCACTTACATTATAGTGGTCACACAGTGTACAGCAAAGTCACAcaggtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtggtgggcgtgtgtgtgtacgtacAGTTTGGTGTCAATGTCTGTGAGCAAAGAATGTATAAAGCTGCTTATCTGAGCAGTAAGAGTTTATTTgttaacattagaataaagaCAAACAATTTAACAGTC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K22943 YIPF6; protein YIPF6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649666.1 lncRNA upstream 5009 36605539 ~ 36606254 (+) True LOC111191795
TU32304 lncRNA upstream 57446 36553393 ~ 36553817 (+) True G24037
TU32298 lncRNA upstream 95520 36513840 ~ 36515743 (+) True G24034
TU32263 lncRNA upstream 124663 36483846 ~ 36486600 (+) True G24012
TU32287 lncRNA upstream 139481 36468613 ~ 36471782 (+) True G24031
TU32310 lncRNA downstream 2129 36622118 ~ 36623262 (+) True G24041
TU32315 lncRNA downstream 179929 36799918 ~ 36800520 (+) True G24046
TU32316 lncRNA downstream 180908 36800897 ~ 36802245 (+) True G24047
TU32339 lncRNA downstream 270588 36890577 ~ 36895300 (+) True G24069
TU32434 lncRNA downstream 390981 37010970 ~ 37013258 (+) True G24144
XM_022685081.1 mRNA upstream 152334 36249824 ~ 36458929 (+) True ar
XM_022685055.1 mRNA upstream 514537 36043431 ~ 36096726 (+) True LOC103040783
XM_007256407.3 mRNA upstream 646666 35942095 ~ 35964597 (+) True LOC103037324
XM_007256406.3 mRNA upstream 687306 35877193 ~ 35923957 (+) True msn
XM_007256402.2 mRNA upstream 761072 35823196 ~ 35850191 (+) True zc3h12b
XM_022667758.1 mRNA downstream 6779 36626768 ~ 36628605 (+) True LOC111191796
XM_022685092.1 mRNA downstream 52982 36672971 ~ 36796896 (+) False stard8
XM_022685101.1 mRNA downstream 74537 36694526 ~ 36796896 (+) True stard8
XM_022685124.1 mRNA downstream 363193 36983182 ~ 37003775 (+) True c3hxorf56
XM_022667349.1 mRNA downstream 818094 37438083 ~ 37490233 (+) True eda
TU32264 other upstream 172293 36432208 ~ 36438970 (+) False ar
TU31951 other upstream 1361608 35226849 ~ 35249655 (+) False trdn
TU31950 other upstream 1364964 35226849 ~ 35246299 (+) False trdn
TU31552 other upstream 2688412 33894375 ~ 33922851 (+) False cnksr3
TU31174 other upstream 3529401 33076654 ~ 33081862 (+) False LOC103037425
TU32543 other downstream 1018449 37638438 ~ 37654878 (+) True LOC111194342
TU32737 other downstream 1308366 37928355 ~ 37933989 (+) True G24345
TU32794 other downstream 1472985 38092974 ~ 38098324 (+) True G24390
TU32857 other downstream 1612604 38232593 ~ 38237041 (+) False G24431
TU32915 other downstream 1739346 38359335 ~ 38382310 (+) True G24463

Expression Profile