RNA id: XM_007256415.3


Basic Information

Item Value
RNA id XM_007256415.3
length 1537
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC103040467
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 35807467 ~ 35810107 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACTCATCAGACTTCAGTGTTTTAACTCAAATGGCTCAAATCTCGCGCTCTGTGTGCGCGCTCCTGGCGCTGTTGTGCGCGTTCTCGCCGCCTGTGCGCGCCGCCGCCGGTCAGTACTGTCACGGCTGGGGCTCGTTCCCGGGATTCCGCTGTCCGGAGCGCCACGACGGAGGAGACGCGCGCTACTGCTGCGGCACGTGCACCGTGCGCTACTGCTGCTCGTCCCCGAGCGCGCGCCTCGACCAGAGCACGTGCGACGCGGAGCAGCCGGCCGGCGGAAACGGCGGAGTGAGGACTCTACAGCAAGCAGTTCCCACATATCTGCCATTTGTCATCGTGGTGGGCGCCTTTCTTTCCTTCGTTCTACTGGGGATCATCATATCCATCTGCTGCTGCCACTGTGTGAAGCCCAAGCCCACCGCCGGATCGGCTCCGGCCCAGACCAGCCTGTTGGAGCCTGTTATTGGCCCCTCCCCCAACAACTCCACGCCTTCACGTTCTTCTACCTCCGGGTCAGCCGGACCACACCCGTTTACAGCCCCCATGCCGCAGCCCTTCGTTTCTGCGCCACCTCCTCCACTCCACCAGGGGGCACCACAGTTTTTCCAGCCATTCCTAAACTACTCGCTGCCTCCGGAACACACCATGCTGATGGCCCCAGCCTTTCTCGACAGTCGCTCTGCTTTCAGTCAGGCACACGGACAGCCTTTCCCACAGGCCCCCATGCACACTGAACCAATCTACCCCACCGTCACTGTCTGATGAGGTCATGGACTACAGCTTcctttttgatttgttttgtttgcaaaCTTGTTGGTGTTTGCGGACTTAGACTTCTGTTTCAAGATCGCATAACATTTAGGTTTAGCTTATTATTCTGGCATCACATTTTACTTACCTTACGTAATCTTCACACTTCCCTGCAGGCATGTAATAGTATTAGATGTTATCCTGGCGTAAAATTTTTGTCTCATGTCATGTCCAACACATAACCTGAAGTTAACATCCAACGTACTAacgttggtggccagctgggttACTACTATagattacagtaaaaaaagtatgCAAATTAATTAAGAAACTAAACTTAGTATCTTCCTCAAATTGTTAAGTAACtgctaagtaaaaaaatatgatttaataacTACTACTGTAGTCTCAGGGGGTACTAGAGAACACAAATATCGTAgattaatatgtaataatatatttaaaaaagggaaATGATTTGCCTCTGCCAGATTGTGGCCCTTCAGTGTTGAATTTTAAAGCAATAATTGTACAAATCGTTCTACCTCAGATGCAGTTtgattttgtgtgtttaggAGCTAGGATGCTAATGGCTAATGCAGCTAACAattgttgctttaaaaaaatctgttaatttTACTTTCTTTACTTGACTGTGTTTTCTAATTTTGCTTCTTATAGGAGTGTACTGTGCTTAAagcatttttgtaaaatgtttccttttttacttattatgtGGAATTTATTTAACGAAGacaaataaagttttattttatcacaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32082 lncRNA upstream 9391 35797712 ~ 35798076 (+) True G23866
TU32073 lncRNA upstream 9850 35786752 ~ 35797617 (+) False G23860
TU32072 lncRNA upstream 20318 35781871 ~ 35787149 (+) True G23860
TU32074 lncRNA upstream 22644 35749948 ~ 35784823 (+) False G23860
TU32071 lncRNA upstream 29841 35775779 ~ 35777626 (+) False G23860
TU32085 lncRNA downstream 11193 35821300 ~ 35821831 (+) True G23869
TU32091 lncRNA downstream 18325 35828432 ~ 35830702 (+) True G23872
TU32097 lncRNA downstream 51095 35861202 ~ 35863662 (+) True G23876
TU32162 lncRNA downstream 114237 35924344 ~ 35924568 (+) True G23929
TU32208 lncRNA downstream 194534 36004641 ~ 36039409 (+) False G23967
XM_022684991.1 mRNA upstream 131146 35638347 ~ 35676321 (+) True gab3
XM_007255393.3 mRNA upstream 347128 35448642 ~ 35460339 (+) True serinc1
XM_022684942.1 mRNA upstream 505136 35226798 ~ 35302331 (+) False trdn
XM_007256402.2 mRNA downstream 13089 35823196 ~ 35850191 (+) True zc3h12b
XM_007256403.2 mRNA downstream 13089 35823196 ~ 35850191 (+) False zc3h12b
XM_007256406.3 mRNA downstream 67086 35877193 ~ 35923957 (+) True msn
XM_007256407.3 mRNA downstream 131988 35942095 ~ 35964597 (+) True LOC103037324
XM_022685055.1 mRNA downstream 233324 36043431 ~ 36096726 (+) True LOC103040783
TU31951 other upstream 557812 35226849 ~ 35249655 (+) False trdn
TU31950 other upstream 561168 35226849 ~ 35246299 (+) False trdn
TU31552 other upstream 1884616 33894375 ~ 33922851 (+) False cnksr3
TU31174 other upstream 2725605 33076654 ~ 33081862 (+) False LOC103037425
XR_002651887.1 other upstream 2966141 32837052 ~ 32841326 (+) False LOC103042732
TU32264 other downstream 622101 36432208 ~ 36438970 (+) False ar
TU32543 other downstream 1828331 37638438 ~ 37654878 (+) True LOC111194342
TU32737 other downstream 2118248 37928355 ~ 37933989 (+) True G24345
TU32794 other downstream 2282867 38092974 ~ 38098324 (+) True G24390
TU32857 other downstream 2422486 38232593 ~ 38237041 (+) False G24431

Expression Profile