RNA id: XM_007256619.3


Basic Information

Item Value
RNA id XM_007256619.3
length 2026
RNA type mRNA
GC content 0.44
exon number 19
gene id vipas39
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44460685 ~ 44471931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCTCACATCgatttaaatattacatttcattttcagacttttattttggaggGTGTCTGAGCCAACGCTGCCCGGAAGTGATCAGCTGACGTTTCATGGTTTTGATTAGGCTGCAAAATCTCGAAGATGAGCAGAGCCAAGCCAGAGGACGATGAGTACTGGAACAGCTCCAAGTTCAGCGCCTTCACCTtcgatgatgaagatgatgagtTCACTAAGATGAAAGAATCAAAGCGTGCCGTGAACAGCATtcttgttgatgatgatgacgacgaCGATGATGTTGAGAAGGTCAGCTGGAGTGGGGAGCCTATTGGAAgTATCTCCTGGTCAGTCAAAGAGACGGCTTCCAGCTTTCGTTCCAGTGGGGAACAGAGCTTTCCAAAAATCGACACTGCCCCCTCGTTGCCTAAACAGGGTTCTGGTTACTCCTTAAGTTCCTTGTTCAAAGCAAAGAGCAAGCCCTTCCAGTCATTTTCGGAATCTTTTACTGATACATCAACCAGAGCTTATGCACCAGAACTGCGCAAACCGAAGTCGGAGTGTAAGGATTATATGAGCGACTGGAGCCCTGAGGAGACAGTTCGACGGATGCGGAAAGGAAGGgCGTATTCCCTGGAAAGGTTCCGCTCTCTGCAGGATAAATTGCTGCTGTTGGACGAGGCAGTCAGCTTACATGATGGCAATGTTATAACTGCTgtattaatatatttaaagaggTCATTAAGTAAAGAAATCCTCTTCCGGGAGTTGATGGTGAGGGAAGTAGCTTTGCGGCATTATGTTCACTATCTGAAAGAGATGGGCGAGCAGAAGCTTTTGGTGGAGCTGATGAAGGCCCTTGGCAGAACAGAGGATATGGCATTAATGCAGTACAAGGAGCATTTGAATATAAAGGACGAAGGCCGAAGAAGGGACTTCCTTAAAAGTTGTCTAAgTCTTCCTTTCTCACAAGATGATGCCATGCATGTACAAGACCATTACACACTTTTGGAGAGACAGATCATCATAGAGGCAAATGACAAGCGGGGGGAGGCAGAAATCTTTAGGAAATACCCTAGAAAGGCTTCCATCCTGAACATGCCACTGATCACCACACTTTACTACTCCTGCTTTTACCACTACGGAGAACCCGAGggTACTTTCAGCAGCCCCGCTAACATCAGGAAAACATTCAGGATTTCAGAAAAGCAGTACATCCTCACAGCTCTTGGAGCCAGGGCAAAGTTGAAATCCTGGTTTGATGTGGATAGTTTATTCAACACCAAGAACTGGCTGGGTTACACCAAGAAAAGATCCCCCATCGGCTTTCACAGAGTGGTGGATATCCTGCAGAAAAACAATGCACCTGCCCAGGTGTTGCAAGAATATGTGAATTTGATCGATGACCCAGAGCTGAGGCTGAGCCTGGCTCAGAAATATAAATGTCATGACATTGTGATTGATACATACAAAGATCTGAAGGACCGGCAGCAGCTGATTGTGTATCAGGGTAAAGTGGAGCGTGGCTCACATGAAGACAGAAAGATTGAGGAGCTGATAAATAACATGCAAATCAGGTGGAAGAACTGACCTTTGAAGGCTGAGGGGTAATATTTTTTCAGCTGATGCACGGCCAAACTTCATAAAAGGACTTAAAAGCTGTCGTAGTATTAACACAGTCTGAGAGCAGCCTTTTTAGTTTTTCTGTGTTGGTGGATCAAAAGGAGGACGGTCACAGATCCACAAACAAGTCATACTTCCTTCACCTGCCTTTTCATTATCATATTGCCATCTGCATCTTGGAATATATTTTCCTGGCTTGTCATGGCTGTAGAGCTGCCAAGTGTCCTTTTGCCAACAACAGTGAAAAACTAACTTGCATTTTGAGGAAGAAATGCATAACCGGGAGCGGCTGAACTGCACAGACCATTGTATGTTGTCCTTATTTACATCACTGTCTGTATTGAACATTCCTGATTAATGGATTTTTGTATCAAAAAAGGTGAACAcgaatttatttaataaaaacatatttaaactgtt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0007283 spermatogenesis biological_process
GO:0015031 protein transport biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0005769 early endosome cellular_component
GO:0005770 late endosome cellular_component
GO:0055037 recycling endosome cellular_component

KEGG:

id description
K23287 VIPAS39, VPS16B; VPS33B-interacting protein in polarity and apical restriction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35148 lncRNA upstream 83158 44377325 ~ 44377527 (+) True G26124
TU35145 lncRNA upstream 92754 44364592 ~ 44367931 (+) True G26121
TU35127 lncRNA upstream 136863 44319986 ~ 44323822 (+) True G26107
TU35086 lncRNA upstream 188181 44272294 ~ 44272504 (+) True G26088
TU35027 lncRNA upstream 199669 44256473 ~ 44261016 (+) True G26043
TU35252 lncRNA downstream 211257 44683188 ~ 44688403 (+) True G26202
TU35266 lncRNA downstream 263903 44735834 ~ 44736653 (+) True G26216
TU35267 lncRNA downstream 265236 44737167 ~ 44738115 (+) True G26217
TU35278 lncRNA downstream 296226 44768157 ~ 44768487 (+) True G26225
TU35279 lncRNA downstream 297331 44769262 ~ 44770002 (+) True G26226
XM_022686599.1 mRNA upstream 426 44417438 ~ 44460259 (+) True cdc42bpb
XM_007245350.3 mRNA upstream 101282 44357276 ~ 44359403 (+) True LOC103042260
XM_007245348.3 mRNA upstream 113029 44339246 ~ 44347656 (+) True LOC103041645
XM_007245347.3 mRNA upstream 162966 44281122 ~ 44297719 (+) True pnoc
XM_007245341.3 mRNA upstream 206453 44220915 ~ 44254232 (+) True elp3
XM_007256614.3 mRNA downstream 2217 44474148 ~ 44479904 (+) True LOC103046392
XM_022668053.1 mRNA downstream 201199 44673130 ~ 44693172 (+) True LOC111191907
XM_022686638.1 mRNA downstream 238442 44710373 ~ 44727205 (+) True LOC111197225
XM_007229711.3 mRNA downstream 331628 44803559 ~ 44808849 (+) True wdcp
XM_022686640.1 mRNA downstream 331646 44803577 ~ 44808849 (+) False wdcp
TU34777 other upstream 966370 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 1035779 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 1038639 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 1097241 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 1944128 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 2056464 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 3806336 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 3808834 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 4083866 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 4083866 48555797 ~ 48641905 (+) False G26995

Expression Profile