RNA id: XM_007256633.3


Basic Information

Item Value
RNA id XM_007256633.3
length 1448
RNA type mRNA
GC content 0.45
exon number 7
gene id pinx1
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59139580 ~ 59168498 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcagGCATAGGTGGGGAAGCCTGGCGGCAGCGTCCACATGCTCCAGGACCCCACGATGTCCATGCTTGCTGAACCTCGTCGAAGGCAGAAGTGGTCTGTGGACCCGAGGAACAGTGCATGGAGCAAAGATGAGTCCAAGTTCGGCCAGAAGATGCTGGAGCGAATGGGCTGGTCCAAGGGAAAGGGTCTTGGAAAAACTGGGCAGGGTGCTACAGACCACATCAAGGTTAAAGTGAAAAACAACAGTTTGGGTTTAGGTGCCGCAGTCTACAATGAGGATAACTGGATTGCCCATCAGGATGATTTTAATCAGCTTCTTGCTGACCTCAACAACTGCCACGGTCAGAACAGCACTGAAGaaGTCACCCAGGAACAAAAACAAGGTTTTAGTTTGGAGGAGAAATCAAAGACCTCCAGAAAACGGGTCCATTACATGAAATTCACTAAAGGGAAGGACCTGTCCAATCGCAGTGAGACGGACCTTGCTTGCATCTTTGGGAAAAGATCAAAAAAGACCAGAGATCAGGATGAGGAAAGCAGTGGTCCTGAATCTCAAGAGGAGAAGGAACAAAACAGTGAAGATGACAAAGAGCAGCCTTCCAACTCAGAGCTGGAGCTCAACACTGTGACCAGCACTCTGACCATGCAGGAATACTTTGCACAGCGGATGGCTCAGTTAAAAAAAGGCCTGTCTGCCTCCTCCTCTCCAGCAGCCAGCAGCAACACGCAGTCTCCATCAGCCCCATCCACATCCATCGAGTACTCTCCCAACACCAGCGACGTGGAGCAGAgtaggaaaaagaagaaaaagaagagaaagcaTGACCGACAGGAGGATGAGGAAAAGGTAGAGGAAGCTGAGGAGCCCCAGTTGAAAGAGGAGGTTGTTGACACAGAGCAGGATCCTtcggagaggaagaagaaaaagaagaaaaggaaacgACAAGCTAAAGAAGAGGATACAACGGAGGAGTGTACTGTCTCTACAGCAATAGACGACTCAGCTGGCGATGTAGCGGACCAAGCTGTgaacaagaagaaaaagaagaagcagaaaaacaaagaagatCCTTCTCAAACACATACAGAGTCAGTGAATGAACATGATTCAACAGAAAACGTAATGGACATAGAGATTTCtgataaaaagaagaagagaagacagagagaaaatttAGAACAGTTGGAGGAGCAGCCAGAAGTCATAGTTGAGGGAAAGAAATCCAAAAAGgccaagaaaaagagaaaaactgaTAATTAAGGCATTacacagatcagattttttgcgTCTATATGAATTTCAAGCAGACGCTCAGGACTCTAAATATAAGCATCTGTAATGCTCACACTTTTCCTCTGTACTGTACTTTGTATTGTACTCTTTATTAGAAATCCATATGGACTTTGTACCATCAATAAAGATTTCTAATAAAAAAGTTCCTCAAAA

Function

GO:

id name namespace
GO:0051974 negative regulation of telomerase activity biological_process
GO:0005730 nucleolus cellular_component
GO:0005515 protein binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0010521 telomerase inhibitor activity molecular_function

KEGG:

id description
K11135 PINX1; Pin2-interacting protein X1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39324 lncRNA upstream 27281 59064473 ~ 59112299 (+) False mtmr9
TU39325 lncRNA upstream 27281 59064473 ~ 59112299 (+) False mtmr9
TU39310 lncRNA upstream 159883 58976662 ~ 58979697 (+) True G29304
TU39299 lncRNA upstream 191000 58935011 ~ 58948580 (+) True G29299
XR_002649734.1 lncRNA upstream 244240 58888723 ~ 58895340 (+) True LOC111191936
TU39408 lncRNA downstream 51078 59219576 ~ 59219829 (+) True G29383
TU39423 lncRNA downstream 67998 59236496 ~ 59243834 (+) True G29388
TU39424 lncRNA downstream 67998 59236496 ~ 59243834 (+) False G29388
TU39448 lncRNA downstream 108109 59276607 ~ 59276837 (+) True G29405
TU39454 lncRNA downstream 144104 59312602 ~ 59312912 (+) True G29409
XM_007256631.3 mRNA upstream 16003 59115439 ~ 59123577 (+) True LOC103024478
XM_007256630.3 mRNA upstream 27265 59092440 ~ 59112315 (+) True mtmr9
XM_007256625.3 mRNA upstream 175917 58954101 ~ 58963663 (+) True LOC103022804
XM_015607694.2 mRNA upstream 204789 58925376 ~ 58934791 (+) True LOC103022293
XM_007256634.3 mRNA downstream 12147 59180645 ~ 59184033 (+) True sox7
XM_022678400.1 mRNA downstream 52768 59221266 ~ 59228840 (+) True LOC111194375
XM_022678406.1 mRNA downstream 60346 59228844 ~ 59230388 (+) True LOC111194376
XM_022678409.1 mRNA downstream 71498 59239996 ~ 59243400 (+) True LOC111194377
XM_022663760.1 mRNA downstream 83475 59251973 ~ 59275534 (+) False LOC103025639
TU39139 other upstream 720763 58417394 ~ 58418817 (+) True G29155
TU38889 other upstream 1327092 57809995 ~ 57812488 (+) False LOC103042006
TU38768 other upstream 1737188 57401925 ~ 57402392 (+) True G28865
TU38502 other upstream 2740139 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 2836370 56290756 ~ 56303210 (+) False LOC103033217
trnal-cag_8 other downstream 29704 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 52034 59220532 ~ 59221036 (+) True G29382
TU39412 other downstream 59570 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other downstream 59813 59228311 ~ 59228562 (+) False LOC111194375
TU39514 other downstream 385828 59554326 ~ 59559752 (+) False atraid

Expression Profile