RNA id: XM_007256634.3


Basic Information

Item Value
RNA id XM_007256634.3
length 2177
RNA type mRNA
GC content 0.51
exon number 2
gene id sox7
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59180645 ~ 59184033 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTCCCCCCAGCACGCGGGGAAAGAGTGAATCACTGCTTTCTAGGAGGAgccgctctcgcgctctctctctctctccaaaaaGATCCCTGCATCCCCAGCAGCTTCCCACAGCACCGGCTCGAGCCTCTTCAGCGTTCAGCGCTCCCGGCTCACTTCGCTTCGGTTCTGTTTTCTTGCTTCGCGCGCAGGTGATCAGCACACCTGAGTGCAGGTGCTCCTTGCGCACACACAGCCTACACGAGCTACGCGCGCACACCGTTCCACAACTTTGGCGGTGAACAGCGTGAGCGCGCACATGGCCGCGCTAATCACCTCGTACTCCTCGTGGCCGGAGAGTTTCGAGTGTCCCGCCGCGGGAGATGGAGACGGCGGGGACGCGCGTGGGGGCCAGCGCGCTCCCGCGGACCGGGCGCCGGAGCCGCGCATCCGCAGACCCATGAACGCGTTTATGGTGTGGGCCAAGGATGAGCGCAAGAGGCTGGCGGTGCAGAACCCGGACCTGCACAACGCGGAGCTCAGCAAGATGCTCggaAAGTCCTGGAAGGCCCTGACTCCCTCACAGAAGAGGCCATATGTTGAAGAGGCAGAGAGGCTGCGGGTCCAACACATGCAGGACTACCCCAACTATAAGTACCGTCCACGCCGGAAGAAGCAGCTGAAGCGAATCTGTAAGCGTGTGGACCCTGGCTTCCTGCTGACCGGCCTGGGCCCTGACCAGAACTCTCTGTCGGATCCACGTGGCTGCTGTCACTCCATGGACAAAGATGATGAAGGTAGTGTTGGTGGCAGTGGTGGATTCTCCTCAACCAGTGCAACATTGCCTGGTGTGAGGGTCTTCAGGGACACTGCCAGCACCGGCAGCTTTGACACATATCCCTATGGCTTGCCTACACCACCTGAGATGTCTCCTCTGGATGCGGTGGACCACGAGCACCCCTCCTACTATTCTTCCTCCAGTTCTATCCCCAGCAATTCCTGCTCAGCCTCCAGTTCTGGCCCAGATGATCGACGTCCCACGCCGGTTCACATGAGCAGCCCGCCGCCATACCATCCTGACTACTCCCATCAGGCACCTCTCCATTGTGGTGGCACACACCTGGGCCATATCCCCATGCCTCACCAAAGTAGTGGACCGACCCTCATCCCCACACCTCCACTCTCCTACTACGGCACCCCGTTCCCTCAGGTGCCGGTACACCACAGCCTGCAGGGACACTTAGGCCAGCTCTCACCGCCACCTGAGCAGGGTCACCTGGAGAATTTAGACCAGCTAAGCCAGGCCGAACTGCTGGGTGAAGTGGACCGTgatgagtttgaccagtacctGAACTCCACCAGCTATCACCCAGAACAGAGTGGGATGACAGTGactggacacatccaggtaacTCCGGCATCTACCTGCCCAAGCAGCACCACAGAAACCAGTCTCATCTCTGTTCTGGCTGATGCGACAGCTGCTTACTACAACAATTACGGCATTTCttaaagaaagagacaaagtgaCAAAAGACACTATGTGTGGACAGAGACCATGGGCACTAAGTGGGTCATCCATGTAAACAAAAGGAGGACAGAAGGAAAGGAAGAATATACGGGATGTCAAGGGACACCTCAGGGATGCATAGATAAAGCTCTAAAGTTCATTCCCATCTTTGTTTCCAGGAAAAGAGAGGGCAAACTGGACAAACTGTCAGTCCTGCTGAAATGTTCTCAAGACATTGTTACAGATACTTGTACATTTGCTCTGCAGCTTATTTAtgtatctaattttttttttgcattattccATATTGTATTGCTGTTTTCTCCTGTCCTAATAATCATGCCTTTATTACAAACCTCAGTTGTTTTACCTCAAGACACTGTATTTAAAGTGAGACTGGACTCTTCCGCAGATCTTCCATAGGACTCATGAAGGAAATAGTCTCCTTTTTTATAAATACccatatgaatatatatatatatattgtactcATAAATTGTTACcaagaaaataataatgatggATATTATTGTATGCTGATTTAGGGGTTTTGTgacattaatttaattgaaataaaataccAAATTTCTACTTTGATATCTCTGCAGATATCAGTGTCATATGAATGTCCGTGACTTTAATTATGTAATTTGAAGATCGACATTAAATGATGATGTTGAATGAAGGACA

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0001570 vasculogenesis biological_process
GO:0060840 artery development biological_process

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39324 lncRNA upstream 68346 59064473 ~ 59112299 (+) False mtmr9
TU39325 lncRNA upstream 68346 59064473 ~ 59112299 (+) False mtmr9
TU39310 lncRNA upstream 200948 58976662 ~ 58979697 (+) True G29304
TU39299 lncRNA upstream 232065 58935011 ~ 58948580 (+) True G29299
XR_002649734.1 lncRNA upstream 285305 58888723 ~ 58895340 (+) True LOC111191936
TU39408 lncRNA downstream 35543 59219576 ~ 59219829 (+) True G29383
TU39423 lncRNA downstream 52463 59236496 ~ 59243834 (+) True G29388
TU39424 lncRNA downstream 52463 59236496 ~ 59243834 (+) False G29388
TU39448 lncRNA downstream 92574 59276607 ~ 59276837 (+) True G29405
TU39454 lncRNA downstream 128569 59312602 ~ 59312912 (+) True G29409
XM_007256633.3 mRNA upstream 12147 59139580 ~ 59168498 (+) True pinx1
XM_007256631.3 mRNA upstream 57068 59115439 ~ 59123577 (+) True LOC103024478
XM_007256630.3 mRNA upstream 68330 59092440 ~ 59112315 (+) True mtmr9
XM_007256625.3 mRNA upstream 216982 58954101 ~ 58963663 (+) True LOC103022804
XM_022663695.1 mRNA upstream 245854 58927000 ~ 58934791 (+) False LOC103022293
XM_022678400.1 mRNA downstream 37233 59221266 ~ 59228840 (+) True LOC111194375
XM_022678406.1 mRNA downstream 44811 59228844 ~ 59230388 (+) True LOC111194376
XM_022678409.1 mRNA downstream 55963 59239996 ~ 59243400 (+) True LOC111194377
XM_022663760.1 mRNA downstream 67940 59251973 ~ 59275534 (+) False LOC103025639
XM_022663751.1 mRNA downstream 79035 59263068 ~ 59275534 (+) True LOC103025639
TU39139 other upstream 761828 58417394 ~ 58418817 (+) True G29155
TU38889 other upstream 1368157 57809995 ~ 57812488 (+) False LOC103042006
TU38768 other upstream 1778253 57401925 ~ 57402392 (+) True G28865
TU38502 other upstream 2781204 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 2877435 56290756 ~ 56303210 (+) False LOC103033217
trnal-cag_8 other downstream 14169 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 36499 59220532 ~ 59221036 (+) True G29382
TU39412 other downstream 44035 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other downstream 44278 59228311 ~ 59228562 (+) False LOC111194375
TU39514 other downstream 370293 59554326 ~ 59559752 (+) False atraid

Expression Profile