RNA id: XM_007256637.3


Basic Information

Item Value
RNA id XM_007256637.3
length 3180
RNA type mRNA
GC content 0.41
exon number 14
gene id LOC103025639
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59251973 ~ 59275534 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctaaaaaaaaatatatttacaatttagAACATACTAGGGGTAAATGAAGGTATTTTAGTATAGGATAAACATATCAGCAAATGTACTGTAACTAAAAGAAGAAAACCACATCGGTCAAAGcaggaaatatatatctgtGAGCTAAGTCACATCCTGTGATGCAGTGTATTTTAAGAGCTACTGAAGTGGTCTCACTAAAAACAACTTGCTTTTATCTTCATGTCTTTCACACTCCTTCACACAGAGTGGACTGTGAAAAAGAGGCTTATGAACAACTGATTAATTCATCAGCTATAAATCATGACCCGTAGTCGTGGTCAATGTACGATCTAAAAGTAGATCTGTGtaggattagggttaaggttagggaaGTTTATTAGCCACACCAAGAGAACTAAATACGCTGTATAACTCCTTTAGAATTCCGGAAAGCTACTCCCTCAAGGAGTTCCACAGATGGCCAAAAGATATACTCCAATCAAACCAAATATTATGTTGTTATcaattataaaatgttaaaatgattgCTTTACACATTACAATTGGTTTCtctagtttagttttaaatgtgtcttttgtattttctcTGTTCTGTATTTTGTCTTTGAGTGTGATGTAAAAGCTGAGTGAAGAAGCAGCAGAGTTTGTGAATTGAGCTCTGGTGAAGAGGAAAGGGAGGGGATAAGCAgactaaataaacacaacaacTGCTCTGCATTTATCTAATTCCACTAATGTGGTCTCCCAGAGCACGCAGTGGGCTTCAGCTGCTTTTCAGATGATGATCATAAGGGTGCATGTAAgcaagtgagaaaaaaaaaaaacaactaaataaacagaaagtTAAAAAATAGAGACAGAAGTTCCTCACCTCTTCAAGAATTCTCTGACAGAACTGGATTCTAACTTACAGCGAATTTAAGGCGGCAGAAGATGTAGACCTCATTATGAGTGCAGATGCTCATATGGACTACAGAGCTGCGTGCTGACGGGAGTGGAGACTGACATTAAGCATTAAAGATCGGGTGTGAGCTGGCAGAATGGGCTGTACTTGCAGTGGTCAGAAGAAACATAAAGAAAAGGGACATCTAAACAATAATTCGGCAGCCAACAACAAATCACACCCAAGACAACTTGGGCAGCGTTCTGCAGACTATGatgAGGATATTGTGATTGCTCAACATGACTTCAAACCAAACAACGATAGCGATCTTCCATTTAAGAAAGGAGAGAAACTCAAGATCATTCAGGAAAATGGAGACTGGTGGTTGGCTAAATCTCTTGTCACTGGAGATGAGGGATACATTCCATGTACCTATGTGGCTCGAGCTCACACTCTGGAGGTGGAAAGATGGTTTTTCAAGGATCTAAGTCGCAGAGAGACGGAGCGTCTTCTGTTAGCTCCAGGGAACAGGGTTGGTTCCTTCCTTGTCAGGGAAAGTGAGACCACCCCAGGTGCTTTCTCCCTGTCCATAAGAGTCTCTGTTCCAGAACAAGGCGATTTGGTCAAGCACTATAAGATCCGTGCTCTTGACAAAGGAGGCTACTACATCTCTCCCTCCCTGACCTTCCCCTCTCTGCAGGAGCTGGTGCAGTATTACTCCAGATCGGCTGATGGTCTGTGTCAGAGGCTTGGAAGCCCCTGTAAAACTGCTGCTCCACAGAGGCCCTGGGCTCAAGATGAGTGGGAGATCCCAAGGGAAACGTTAAAAATGGTGAAGAGATTGGGTGCTGGACAGTTTGGGGAAGTCTGGATGGgataCTACAAAAACAACCAGAAAGTGGCCATTAAGACTCTGAAAGAGGGCAGCATGGAGCCAGAGGCCTTCCTGCAAGAGGCGAACCTTATGAAGAAGCTTCAGCATGACAGACTAGTGAAACTTCATGCTGTAGTCACTCAACAGCCAATCCTCATAGTCACAGAGTTCATGGCAAATGGGAGCTTACTGGACTTTCTCAAAACTGATGATGGCAAGAAATTAAAATTACCCAAGTTAATAGATATGGCAGCTCAGATTTCAGAGGGCATGGCTTACATAGAAAAGAAGAACTACATTCACAGAGACCTTCGGGCTGCCAACATACTGGTCTCTGAAACTTTGCACTGTAAGATAGCAGACTTTGGCCTGGCCAGGATTATCGAGTCTGAGTACACTGCACAAGAAGGAGCAAAATTTCCAATTAAGTGGACAGCCCCTGAAGCTATCAACTTTGGCACCTTCAGCATCAAGTCAGACGTCTGGTCCTTTGGTGTTCTCTTGACAGAAATAGTGACCTATGGACGAGTACCATATCCAGGAATGACAAATCCGGAGGTGATCCGTAACCTGGACAAGATGTACAGGATGCCATGTCCGGATGACTGCCCTGAGGAGCTGTATGATATTATGCAGATGTGCTGGAAAGAGAAACCAGAGGACAGACCCACATTTGAATACCTGCAGGACACACTTAACGACTTCTACATCGCTACTGAGGGCCAGTACGAAATGCATCCTTAAGCTTTGAGCACTCTTACAACTGGACAAAGAACTTAAAAACATAAACTTAGATGTTGTAGAGGATTCAGTGGCTCACAAAAGCAATTGATTCATGGATGCAGCATGTGACAGATGTGTGCTGATTAAGGGGAATGTGTTCCCTGTGACCGGACCGATTAATGGATTTTATAGACAACTCAACCCTTTGCGTTTCATTCCTGAGTTCCTGTGGAAATCTTTGACCACTGACCTGACTTCTTGGATGAAGGTAGTGTGTGGTAACTTGTGGTACATTTAGCGTTATACAGTGTGTAGTCTGTATAACACATTTTTAAGCTACAAATCAAATACATTGCAGGTTTAGCAATGTATTGCCATCAATCATAGGATAAAATGTGCAACAATCCCTGTAAACCAAGCACAGTGCTATCAAATAACTTTGACGatctaaccaatcaaaacactttgtttttttgtgtagcaCTGGAGATCCCAGAGCTGCGAGACTGGTGTATTTTTACCCTTAACTTAACCCTGagattttgtttcatttttacgCCCAGAGTTTTTGCTGTTACATATTTCTCTCACTACTAAATGTTTGAATATATATGAAACTTTAGTCTATTGACACTTGAACAGACggtttttccatttatttggTTGTTAATTTTTTGGATTAATAAATTTGTACAATACA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39423 lncRNA upstream 19234 59236496 ~ 59243834 (+) True G29388
TU39424 lncRNA upstream 19234 59236496 ~ 59243834 (+) False G29388
TU39408 lncRNA upstream 43239 59219576 ~ 59219829 (+) True G29383
TU39324 lncRNA upstream 150769 59064473 ~ 59112299 (+) False mtmr9
TU39448 lncRNA downstream 1073 59276607 ~ 59276837 (+) True G29405
TU39454 lncRNA downstream 37068 59312602 ~ 59312912 (+) True G29409
TU39479 lncRNA downstream 160626 59436160 ~ 59436375 (+) True G29432
TU39501 lncRNA downstream 231474 59507008 ~ 59519972 (+) True G29448
TU39591 lncRNA downstream 356170 59631704 ~ 59631907 (+) True G29515
XM_022678409.1 mRNA upstream 19668 59239996 ~ 59243400 (+) True LOC111194377
XM_022678406.1 mRNA upstream 32680 59228844 ~ 59230388 (+) True LOC111194376
XM_022678400.1 mRNA upstream 34228 59221266 ~ 59228840 (+) True LOC111194375
XM_007256634.3 mRNA upstream 79035 59180645 ~ 59184033 (+) True sox7
XM_007256633.3 mRNA upstream 94570 59139580 ~ 59168498 (+) True pinx1
XM_007256639.3 mRNA downstream 22147 59297681 ~ 59353125 (+) True fndc4
XM_007256652.3 mRNA downstream 212627 59488161 ~ 59503522 (+) True LOC103030186
XM_007256648.3 mRNA downstream 278751 59554285 ~ 59559762 (+) True atraid
XM_015607684.2 mRNA downstream 311175 59586709 ~ 59598332 (+) True nme6
XM_007256655.3 mRNA downstream 477942 59753476 ~ 59765073 (+) True LOC103031439
TU39412 other upstream 34369 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other upstream 34506 59228311 ~ 59228562 (+) False LOC111194375
TU39407 other upstream 42032 59220532 ~ 59221036 (+) True G29382
trnal-cag_8 other upstream 64784 59198202 ~ 59198284 (+) True trnal-cag_8
TU39139 other upstream 844251 58417394 ~ 58418817 (+) True G29155
TU39514 other downstream 278792 59554326 ~ 59559752 (+) False atraid
TU39573 other downstream 315455 59590989 ~ 59598241 (+) False nme6
XR_002649037.1 other downstream 1155327 60430861 ~ 60443507 (+) True LOC111190190
trnad-guc other downstream 2417679 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 2421266 61696800 ~ 61696871 (+) True trnad-guc_1

Expression Profile