RNA id: XM_007256654.3


Basic Information

Item Value
RNA id XM_007256654.3
length 2350
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC103031133
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59767382 ~ 59786661 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCTGAACCTCCTCACAAGTGCGTGCGAGCGCGCAGCTCAAGGACGCGAGCCGGAGCACTTCATCCTGCAAACGTGTGCGTGCACGAGCCTGGACCACAACCGTTACCATCATCTCCAGCATCCCTCTTCCCCTCCTGCCTGTGATGAAGTGAATCAGCCGGCTGTATcagctgagttactgagttagAGTCTTGTAAAGTGTTGGAGTGAACAGGTGCGCAGAGCCGGCGGTGCGTCTTTACGCGCAGATCactgacagacagagagacagacagacacacagagagagaggaagatgcGCGCAGAGATGAGCAGGACAGCAGGCGAGGAGGAGTTTGGAGATGGGTGCCAGTAACTGAACCCTGAAGCCTTCATTAACACGATCATCTGCAGGAGATCAGACTGTGCTACAATGATCCAAACTCAACACCGCACGAGTTAACTGCGCGCGCGCGCTGGAGGATGGAGCTGATCCCAGCCTCTCTCAGCTGAAGCTGCAGGCGGGATGGAGCGCTCCGGGATCAGCCCGCGGAGGATGAGGAGCACCCTGCTCTTCATCATGCTCTGGAAGTCCGTGTCCTGTTATGAGAAGACTCATTCACATGCTGAGGATGAACTCTTCAAAAAGCTTTTCATTGGTTACAACAAGTGGTCCCGGCCTGTCCCAAACACCTCAGATGTCGTCATTGTTAAGTTTGGCTTGTCCATCGCCCAGCTGATTGATGTGGATGAGAAGAACCAGATGATGACGACCAATGTCTGGCTAAAGCAAGAGTGGAATGACTATAAACTAAGATGGAAGCCTTCTGATTACGACAATGTGACGTCCATCAGGGTGCCATCAGAGCTCATCTGGGTGCCAGACATTGTGTTGTACAACAATGCCGATGGGGAGTTTGCCGTGACCCACATGACCAAAGCCCACCTCTTCTACACAGGGAAAGTGCGCTGGGTTCCTCCAGCCATCTACAAGAGCTCCTGCAGCATCGATGTCACCTTCTTCCCCTTCGACCAGCAGAACTGCAAGATGAAGTTCGGCTCGTGGACATACGACAAGGCCAAGATTGACCTGGAGCGTTTGGAGACAATGGTGGACCTGAAGGACTACTGGGAGAGCGGTGAGTGGGCCATCATCAACGCTGTGGGCACCTACAACACCAAGAAGTACGACTGCTGCCACGAGATCTACCCGGACATCACGTACTTCTTCATCATCCGGCGTCTTCCTCTATTCTACACCATCAACCTCATCATCCCCTGCCTGCTGATCTCCTGCCTGACCGTGCTGGTCTTCTACCTGCCCTCAGACTGTGGCGAGAAGATCACGCTCTGCATCTCTGTGCTCCTGTCACTCACTGTCTTCCTCCTGCTCATCACAGAGATCATACCGTCCACTTCACTGGTCATTCCGCTCATCGGAGAGTATCTTCTGTTCACCATGATCTTCGTCACTCTCTCCATCATCATCACCGTGTTCGTTCTGAACGTTCACCACCGCTCCCCAGGCACCCACGAGATGCCCCACTGGGTACATGCCGTCTTCCTGGATCTCATCCCCCGCTGGCTTTTCATGCGCAGGCCGGCACCCGACAGCCGCCGCAGGCAGAGGCTGCTGCTTCTGCAACAGGGTCAAAGGTCACGGCCGTCCTGCCTAAGCACCTCAGCCAGCTGGTTCAAGGAGGATACAAGGACCTGCTGCTACAATGAACTGGAGCTAGGAACGCTTTCCTCCGCTTTCTCACTCTCCTTCCGTCCTCCCTCTCCCCGGCCCCCTGGATCTACCCCTCCAACCCTGCAAAAGCATGGAGCTCCTCCTCGGCAGGAGATAGGCATGGCCTGCCTGCCAAACTCCAGGCATTCAGGTGCTAGAATAAACCACACGAATCGGCCCACTGAAGAAGACCAGAGGTCCCCTCTGTCCCCAAGCATCATGCAGGCACTGGAGGGGGTTCACTACATAGCGGACCACTTAAGGGCAGAGGACGCCGACTTCAGCGTTAAGGAGGACTGGAAGTATGTTGCCATGGTGATCGATCGGATCTTCCTGTGGATGTTCATTATAGTGTGTCTGCTGGGCACCATCGGCCTGTTCCTTCCCCCCTGGCTGGCTGGCATGATCTAGAGCCTGGcttcttacacactcacacatgtaCGGGCACTGTGGGGACACTTATCAGCAGAAGCGGTGAAGGGACGCTACATATAGAAACACACAGTGCTCAGTGAATGAAGAACTGTCTGCGGGGAACAGCAGCTGCTGCGCAAAAGCCCAGTCAccaaacctctctctctctgaatgtaAAACCTTGCAGTGAATACTGTTTAATAAAATTTGGCACcttaaaaaag

Function

GO: NA

KEGG:

id description
K04804 CHRNA2; nicotinic acetylcholine receptor alpha-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39604 lncRNA upstream 63272 59700063 ~ 59704110 (+) True G29526
TU39592 lncRNA upstream 134914 59632119 ~ 59632468 (+) True G29516
TU39591 lncRNA upstream 135475 59631704 ~ 59631907 (+) True G29515
TU39501 lncRNA upstream 247410 59507008 ~ 59519972 (+) True G29448
TU39479 lncRNA upstream 331007 59436160 ~ 59436375 (+) True G29432
TU39641 lncRNA downstream 65410 59852071 ~ 59852524 (+) True G29558
TU39643 lncRNA downstream 70580 59857241 ~ 59857582 (+) True G29560
TU39651 lncRNA downstream 101195 59887856 ~ 59985113 (+) True G29567
TU39665 lncRNA downstream 309494 60096155 ~ 60097909 (+) True G29580
TU39679 lncRNA downstream 341400 60128061 ~ 60131474 (+) True G29591
XM_007256655.3 mRNA upstream 2309 59753476 ~ 59765073 (+) True LOC103031439
XM_022663876.1 mRNA upstream 2309 59753476 ~ 59765073 (+) False LOC103031439
XM_015607684.2 mRNA upstream 169050 59586709 ~ 59598332 (+) True nme6
XM_007256648.3 mRNA upstream 207620 59554285 ~ 59559762 (+) True atraid
XM_007256652.3 mRNA upstream 263860 59488161 ~ 59503522 (+) True LOC103030186
XM_007256658.3 mRNA downstream 274437 60061098 ~ 60091808 (+) True rhoj
XM_007256666.3 mRNA downstream 479176 60265837 ~ 60273289 (+) True LOC103035162
XM_007256665.3 mRNA downstream 493178 60279839 ~ 60281890 (+) True LOC103034839
XM_007256671.3 mRNA downstream 608917 60395578 ~ 60462048 (+) True LOC103036511
XM_022663950.1 mRNA downstream 609603 60396264 ~ 60462048 (+) False LOC103036511
TU39573 other upstream 169141 59590989 ~ 59598241 (+) False nme6
TU39514 other upstream 207630 59554326 ~ 59559752 (+) False atraid
TU39412 other upstream 538683 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other upstream 538820 59228311 ~ 59228562 (+) False LOC111194375
TU39407 other upstream 546346 59220532 ~ 59221036 (+) True G29382
XR_002649037.1 other downstream 644200 60430861 ~ 60443507 (+) True LOC111190190
trnad-guc other downstream 1906552 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 1910139 61696800 ~ 61696871 (+) True trnad-guc_1
TU40175 other downstream 2139445 61926106 ~ 61936083 (+) True LOC103046322
TU40444 other downstream 3052574 62839235 ~ 62843043 (+) False LOC103045797

Expression Profile