RNA id: XM_007256657.2


Basic Information

Item Value
RNA id XM_007256657.2
length 5773
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC103032183
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59882140 ~ 60059600 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcgcggagccggcggagCTCCGGGGCCACAGTGGAGCTGGGCGAGGCGCGCGGGCAGGGCGCAGCGTTACCATGAGCGAGTCCaccacgcgcgcacacacacgcacactcacgCACGCACGCTGCACGTTCGCTATCAGCTTCGGCCAGGTGTGCGCGCTCAGCTTGGGCCACAGACGCTCGCGGCGGAGCGCAGGATGCACGGCGGAAAGAGAGGCCTGGTGGCACCGCAGAACACCTTTCTGGAGAACATCGTGCGGCGCTCGAGCGaaaCCAGTTTCCTTTTGGGTAATGCCCAGATCGTGGAGTGGCCTATAGTGTACAGTAATGACGGATTTTGCAAGCTGTCTGGCTACCACAGGGCTGAGGTCATGCAGAAGAGCAGCACATGCAGTTTTATGTATGGTGAACTGACAGACAGGAAGACAATAGACAAAGTCAGACAGACCTTTGATAACTATGAGTCCAATTGCTTTGAAGTGCTGCTTTATAAGAAGAACAGGACACCAGTGTGGCTGTACATGCAAGTGGCCCCGATCAGGAACGAGAATGATAAAGTGGTTCTGTTCCTCTGCACTTTCAAGGATATAACCGTCTTCAAACAGCCCATTGAGGACGAGACCACCAAAGGATGGACCAAGTTTGCAAGGCTGACCAGGGCTCTGACCACCAGCCGAGGCACAGTACAGCAACTGGCGCCTATGAACAAGACTGAAGTCAGCCACAAGCCATCACGACTAGCTGAGGCACTTCAACTTGGTTCGGACATCCTCCCGCAATACAAGCAAGAGGCCCCCAAAACCCCCCCTCACATCATCCTACACTACTGCACTTTTAAGACCACCTGGGACTGGGTCATTCTCATACTGACCTTCTACACCGCCATCATGGTGCCCTACAACGTCTCCTTCAAGACTAAGCAGAACAACCTGGCCTGGCTGGTGGTGGACAGCGTGGTGGACGTCATCTTCCTGGTGGATATTGTGCTGAACTTTCACACGACGTTTGTGGGCCCTGGAGGGGAGGTCATATCGGACCCCAAACTGATACGTATGAACTACCTGAAGACCTGGTTTGTCATAGACCTGCTGTCGTGCCTGCCCTATGACATCATCAACGCCTTTGAGAACGTGGACGAGGATCCTATATCGGACTCCACTGCAGTTGGCCACCTGCCAGCGTCGGGCAGCTCCCCACGGAACGCCACGCGGGCGGAAGACTCCGTGCTGCCGGGTCTCAGCAGTCTGTTCAGCTCGCTGAAGGTGGTGCGTCTGCTGCGTTTGGGGCGTGTAGCTCGAAAGCTGGACCACTATCTGGAATACGGAGCTGCTGTGCTGGTCCTGCTTGTCTGCGTCTTTGGCCTGGTGGCTCACTGGCTGGCCTGTATCTGGTACAGCATCGGTGATTATGAAGTGATTGACGAGGTCACCAACACCATCAAGACGGACAGCTGGCTGTATCAGTTAGCCGTAAGCATCGGCACACCTTACCGATACAACGCCAGCGGATCGGGCCAGTGGGAGGGCGGTCCCAGTAAAGACACTCTCTACATATCATCCCTCTACTTCACCATGACCAGCCTCACAACCATAGGCTTTGGGAACATCGCTCCAACCACGGACGGGGAGAAGATCTTCTCTGTGGCCATGATGATGGTGGGCTCTCTCCTGTATGCCACCATCTTCGGAAACGTGACCACCATCTTCCAGCAGATGTACACCAACACCAATCGCTACCACGAGATGCTGAACAACGTGCGAGACTTTCTGAAGCTCTACCAGGTGCCTAAAGGCCTGAGCGAAAGAGTAATGGACTACATTGTTTCCACCTGGGCTATGTCCAAAGGAATAGACACCGAGAAGGTGCTGTCCATCTGTCCCAAAGACATGCGGGCGGACATCTGCGTCCACCTGAACCGGCAGGTGTTTAACGAGCACCCTGCCTTCAGGCTGGCCAGCGACGGCTGCCTGCGCTCTCTGGCGGTGGAGTTCCAGACCACACACTGCGCCCCCGGAGACCTCATCTTCCACGCCGGAGAGAGCGTCGACACACTCTGCTTCGTGGTGTCTGGATCACTGGAGGTCATTCAGGACGACGAGGTCATCGCCATTCTAGGTAAAGGCGACGTGTTTGGTGACGTGTTCTGGAAGGAGACGGCGCTTGCTCATGCGTGTGCCAACGTGAGAGCGCTGACGTACTGCGACCTTCACGTGATCAGGAGAGACGCCCTGCTGAAGGTGCTGGAGTTCTACACAGCCTTCGCTAACTCATTTTCCCGCAACCTCATCCTCACCTGCAACCTCCGCAAGCGGatcatCTTTCGCAAAATTGCTGACgtgaagaaggaggaggaggaaaggaggcATCAGAAGAACGAGGTGACGCTCTCCATTCCTGTGGACCATCCGGTCCGCAAGCTCTTCCAGAAGTTCAAGCAGCAGAAGGAGATGAGGACACAGGGTTCGTTGCAGTCAGACTTTGAGCGGAACCAGTTCCAGGTGGAGCACCAGCTCCAACCCCTATCTCACCAGCAGcaccatcaccttcatcatcatcagcccCAGTACCAGGTGCACCACACACTCCAACATCAGCACGGACCCCCTATGCAAAACGGGGCCCCTGTTTCAGGCAGTATTGGAGGGAACGGTGGCCCCAGTGTTGTGACTGTCTCACAGATAACCCCTGTGCAGAGCTCTCTGGCTTACATTCAGAGAGAGGACTCTGGCCGAGGCGATGGCCACGAGGCCTTGGAACTGAAGCCCAGCCTGGGCGTAGGGGGACAGAACTGCCTAAAAGTCACCAGTCCAGTTCGCCCCAGGGCAGGGGGCGGTGGGCGGGGCTGGATGCGTCTCAGGAACCCGGGGACTGGAACTTCCCTCGCTCCTCCGCCTGATCCGGTCCGGcagcagagagacgaggagtgGGGATATGTTTCCCAGTCCGTGGAGCTGCTCTCAGAGGACGGCAAGAACCAGGAGGCTGAGGGGGGAGTTCCCAGGGGCGCAGGAGGGTCGGACAACGGTGGCAATGACAACGGCAATGGAAGCGGCAACGAAGGTGGTGAAGATGAAAAAAGTGCACTACACAAGACTGATTCTTGTGACAGTGGTATCACCAAAAGTGACTTGCGCATCGACAGGGCCGGGGACTCTCGCAGCCCAATGGAACGTAGTCCGATGGAGCGGAGCCCGTTCGAGCGAAGCCCATTCGAGCGAAGTCCATTCGAGCAGCCCAGTCCTGGAGCTGGGGTCCTGCCTCCACGAGTTCTTCCAATTCAGCCTGGTCCGGAGCCAGCTCTCCTACAGAACAGCTTGCAGGAGGCTAAGATGGAGCTGAAGGGGGACATCCAGACGCTGAGCGGCCGTCTGTCTGTGCTGGAGGCCCAGGTGGGTGAGATCTTGAGATTGCTCTCTGAGAAGAGCAGACAGAGCACACCTCCACAGACTTCAACCCCCAAAACCAAACTCAAATGCCAGGACATCTTCACCGTCTCGAGGCCTGTCACCCCAGAAGCGGAAAAAAGAGACGAGGGACCCTTTTGAATCGAGAGAGAATGTTTATTTATGGGATATAAGTTGGCGGGTTTATTTATTACAGGTCTCCTTTCCTCACTTGGCAACGGATGAGGAAACTGTTGAAGGAGGAAAGAACAGTTTGTATTGTAAATAGATGCATGTCCAGCTGGAATCTGGCCTGCCGATGAAGTCTACTCTAAGAATAGTGGTTGCTTGTATAATTATGCAGTCGACTGCATGCAAAACGATTTACAGAgacttgatttttttatatttgcccCTAGGCGCTGGACTATCTCTTGACTGACTGATATTTCAGGGCATTTATCTTTAAGAGCAGATGCACTGTGCCCCTGCACACAGGAGCTCTGTAGCTGTAAAGAAAGGCTTGGTTTGGTACCTTGATGATGCTGCTTGAACAAAGCACTTCTGCAGGCTGACTTTAGCTAAGGCTGCTTTTAGTCTCTTTAcaccctttctttttttccgaCACATATCCTGACGTCTCTTTAGTATTTAAATCTTTTCAACGCCTTTCAAATCACAGCATGCAGACTAGAGTTGGAGATTTCGAAGAGATTCCTTTGCTTCTCCTCTAATAGGTTTGAGGAATGAGATAAAATGTAGCTTCAACCCTTTGATTTTCCTCAATGTTCTTTTTCCCCAAAGAAGCAATATTGTCACGGTCGATTTACCATTACCGATTTGACGAGGAGGACGCTGCCGACTGTGGGGCGGCTGGGTAAAACGCTTTAGTATGATATGAGTGCATGCTGGATGGGGTTGAATGCAGACTGGCATGATAGGGTTAGAAAGCATTCATTTACCTCATATCACTTATACAAATGAACTCAACCTGCAACATGCATCCAACTTGTAGCACTGGCTGCATTTTGGGGAAAAATGTCCACGGCAGTCGTAGAAGCATGAACATAGCCACATCAATCTTAGAACAAGCATGGAGAGTATTTCGTTACGCATGATATCAATCAACTTAGGAGTGTTCACTATACATAGGACCGACCAATAGATacagattttaacattttaaacagcttcatccaggttttttacagttaattacCCTGATTTTGCACATAATTAGAGGAAAACTCCATATTTGTATTTGGTGAAGCTAAATTACAAActgaaatattttactttaagatCAAGATTactttaagataagataaaaaaagataaagcatTATCATTTAAACATACTCTGATTACCAGAGCCatttaatatgatttattttaataatatataaagctCAACCTCCCATGCCCTTTCTGTGCACAACATATTCTTGCTCTCAGTGTCcttaaaaacaaacagcagccGAGGTGTTGAACTGTATCCAGTTTACATGGTGCTTACCCAAAGGCCTTGGAAAACAACAAACAGTACCACTTCATAATTCACAAGGAAAGTAAGATTTGTGAGTCTTACAGGGCATCATTTGAACTCAGTTATCTCCTACATAACCTAAATTGCCCTCCAAAGGAACAAAAGTTGCACTTTATTAAATACATAGAAATGCATATACActctttacactttattttgGAACATGTGAACACCTATCCAttaattgaattatttaattagcCAATCATGTGGTAGCAGTGTAGTGCATAAGATCACACATATAAGGGCCAAAGATGCCATCAATCATCAGTATTGCATATGTGTTGGTGCCAGAGAGGCTGGTTTGAGAATTTCTAGAACTGTTGATCTCCTGGGTTTTGTTTTAGACACAACCGTctctagaattagaattagcCTCTTAGAATTCAAACAAGCCCAAATAAAGAAAGAACATCCAATTTAGCAGCAGTTCTTAAGACTGAAAGACGGAAAAGCGCTTAACCTTAGATAACCTCTAAACATTGCAAACCCAAAGGTGGGTGAGCTACAACAGCAGAAAACCACTTTAAGATCCAAGtctgtcagccaagaacagaaagctgaggctgcagtcaGCATAGATCATCAAAATAGACAGCTTaaccctaaaaataaaaaacggcaGACATTGATAAATCTGATTTCTGCTCAGGCCAGAATGTGACCTTTTATCAACAGTCCTGGGGGTAATGCAGGTGGTGTAATGATGTGTAGAATTGTATCAACACCACAGATTGTACCAGATGGCACAGATTATTTGGGTATTtttgctgaccatgtgcatcccttcatggTCGCACATTACCCATCTTCTAATGGCTACATCCAGCATGATAATAAACCAG

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0000160 phosphorelay signal transduction system biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0000155 phosphorelay sensor kinase activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04908 KCNH5, KV10.2; potassium voltage-gated channel Eag-related subfamily H member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39646 lncRNA downstream 23801 59858066 ~ 59858339 (-) True G29563
TU39642 lncRNA downstream 29672 59852055 ~ 59852468 (-) True G29559
TU39584 lncRNA downstream 274294 59607175 ~ 59607846 (-) True G29509
TU39571 lncRNA downstream 303745 59576259 ~ 59578395 (-) False LOC111190079
XR_002649010.1 lncRNA downstream 303748 59576238 ~ 59578392 (-) True LOC111190079
TU39706 lncRNA upstream 14472 60074072 ~ 60091759 (-) True G29608
TU39772 lncRNA upstream 291673 60351273 ~ 60352884 (-) False LOC103035785
TU39775 lncRNA upstream 295869 60355469 ~ 60355877 (-) False LOC103035785
TU39787 lncRNA upstream 324403 60384003 ~ 60384462 (-) True G29681
TU39791 lncRNA upstream 328380 60387980 ~ 60388361 (-) True G29684
XM_022663890.1 mRNA downstream 51249 59792576 ~ 59830891 (-) True LOC103031863
XM_015607686.2 mRNA downstream 178057 59700034 ~ 59704083 (-) True LOC107197813
XM_007256653.3 mRNA downstream 273149 59599420 ~ 59608991 (-) True LOC103030505
XM_022663830.1 mRNA downstream 308529 59562829 ~ 59573611 (-) True eif2b4
XM_022663821.1 mRNA downstream 308531 59562829 ~ 59573609 (-) False eif2b4
XM_007256660.3 mRNA upstream 37888 60097488 ~ 60123478 (-) False LOC103032801
XM_007256659.3 mRNA upstream 37888 60097488 ~ 60117562 (-) True LOC103032801
XM_007256661.3 mRNA upstream 68447 60128047 ~ 60145920 (-) True LOC103033561
XM_022663912.1 mRNA upstream 89797 60149397 ~ 60162066 (-) True LOC103034188
XM_007256662.3 mRNA upstream 103740 60163340 ~ 60177354 (-) True LOC103033873
TU39539 other downstream 443842 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 947351 58932963 ~ 58934789 (-) True G29317
TU39086 other downstream 1707436 58169321 ~ 58174704 (-) False LOC111189852
XR_452898.2 other downstream 3188015 56646027 ~ 56694125 (-) False LOC103031416
TU38322 other downstream 4065542 55815872 ~ 55816598 (-) True G28536
TU39714 other upstream 97938 60157538 ~ 60162024 (-) False LOC103034188
XR_002649735.1 other upstream 309446 60369046 ~ 60369614 (-) True LOC111191938
XR_002649101.1 other upstream 1773848 61833448 ~ 61887888 (-) False LOC103043586
TU40670 other upstream 3150681 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 3150681 63210281 ~ 63256634 (-) False fryl

Expression Profile